Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq702 168 5e-37 seq113 105 5e-18 seq224 87.8 1e-12 >seq702 Length=496488 Score = 168 bits (186), Expect = 5e-37 Identities = 227/314 (72%), Gaps = 8/314 (3%) Strand=Plus/Minus Query 8993 AATTAGTACCGGTTGACCCAAACCCTCCCTCTCCGCGATTGGTGTCAGT---CGT-GGAA 9048 ||||||| ||||| || || || |||||| |||| || | || || || ||| |||| Sbjct 401667 AATTAGTGCCGGTCGATCCGAAACCTCCCGCTCCACGCTCCGTATCGGTAAGCGTTGGAA 401608 Query 9049 GTAACCTCTACCAGTGTGGGATAAAAGATTTGTTCACAAATTAATTGAGCAATCCTGTCC 9108 | |||| ||| |||||| |||| || ||||| || || || || | ||| Sbjct 401607 G----CTCTTCCAAATCCGGATAAGCTATTTTCTCGCAAATAAACTGTGCGATGCGATCC 401552 Query 9109 CCCTTATTCACGACAAAGTCTGTGTCGGAATGATTGAACAGCACCACTCCCACGTTACCC 9168 || || || || |||||| ||| || |||||||||||||| || ||||| ||||||||| Sbjct 401551 CCTTTCTTAACTTCAAAGTTTGTCTCCGAATGATTGAACAGTACAACTCCGACGTTACCC 401492 Query 9169 CTGTAATCCTCATCGATCACACCAGCACCCACGTCGATGAAGTGCTTGACCGCTAGTCCA 9228 | ||| ||||| |||| ||||| || ||||| |||||||||| || || || | || Sbjct 401491 CGGTAGTCCTCGTCGACGACACCGGCGCCCACATCGATGAAGTTTTTCACGGCCAAACCG 401432 Query 9229 GAGCGGGGCGCGATTCGACCGTAGCATCCCACCGGTAATTGCACCCGCAAGTCGGTCATG 9288 || || || || | ||| || |||||||| |||| | || ||| | | ||||||||| Sbjct 401431 GAACGTGGAGCCACTCGGCCATAGCATCCTTCCGGCACCTGGACCTGGATGTCGGTCATC 401372 Query 9289 ACCAGCCCCTTGCC 9302 || ||| ||||| Sbjct 401371 ACGAGCTGTTTGCC 401358 >seq113 Length=3238079 Score = 105 bits (116), Expect = 5e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| ||| || || || || ||||| ||||| || || ||| | ||| Sbjct 1949089 AGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGA 1949148 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| ||||| ||||| | ||||| ||| ||| Sbjct 1949149 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCC 1949208 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || ||| | | | || || | ||| ||||| | || Sbjct 1949209 TTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTG 1949268 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || || || || | ||||| || ||||||||||| Sbjct 1949269 ATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 1949306 Score = 89.7 bits (98), Expect = 4e-13 Identities = 153/222 (69%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| ||| || || ||| || || || ||||| || || || | || Sbjct 854924 AGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGG 854865 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| ||||| ||||| | || | |||||| Sbjct 854864 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCC 854805 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | ||| Sbjct 854804 TTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTA 854745 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || ||||| | ||||| || || ||||||||| || Sbjct 854744 ATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 854703 >seq224 Length=3387546 Score = 87.8 bits (96), Expect = 1e-12 Identities = 150/218 (69%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || || | ||||| ||| || ||| || || || || || || || || || | || Sbjct 1793643 AGACGGAGCACCAGATGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGG 1793702 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| || || || ||||| ||||| ||||| | || | |||||| Sbjct 1793703 CCATCTTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCC 1793762 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| |||||| || || | | | || || | ||| ||||||| || Sbjct 1793763 TTGTCCTGGATCTTTGCCTTGACGTTCTCAATCGTATCCGATGGCTCAACCTCCAGAGTG 1793822 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || || ||||| |||| |||||| || ||||||||||| Sbjct 1793823 ATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 1793860 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380924493722829