Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq2381 275 1e-68 seq2001 159 6e-34 seq2236 95.1 2e-14 >seq2381 Length=1337761 Score = 275 bits (304), Expect = 1e-68 Identities = 878/1331 (66%), Gaps = 78/1331 (6%) Strand=Plus/Plus Query 212901 AGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGAA 212960 || ||| |||| || | |||||| || || || ||||| | ||| | ||||| ||| || Sbjct 918832 AGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGAC 918891 Query 212961 GTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCATG 213020 ||||| ||||||| || ||||| || ||||| ||||| ||| || || ||||| Sbjct 918892 GTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATC 918951 Query 213021 GGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGCC 213080 || |||| ||| || || | | ||||| | | |||| | | ||| ||| Sbjct 918952 GGGGCCAACAGCAGCGAATTGCGAATACCGTGTTTGGCGATCTTTTCCTTCAACTCGGCC 919011 Query 213081 CAGTCCCATCTGCCAGACAGGTCC-TCG--TCCTTCACGTTCCACATGTCAAACTGCAAG 213137 |||| ||| ||| ||| ||| ||||| ||||||||| || |||||||| Sbjct 919012 CAGTTCCA---------CAGATCCGTCGGTTCCTT---GTTCCACATCTCGTACTGCAAG 919059 Query 213138 ATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTT-GGCCAG 213196 ||||| |||||||| || ||||||| ||| | ||| || |||| ||| ||||| Sbjct 919060 ATGCCCTTGCTCACCGGACTGCCCTCGTACGTCTCGTACGGACCAT-CTCGAGCGGCCAA 919118 Query 213197 CTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTT 213256 ||| ||| ||| | ||| || |||||||||| ||||| ||||| | | || ||||| Sbjct 919119 CTCACAGCTCGCTTCCAGCGCGCCGTAGTAGATAGTTTCGAATATTTGCTGATTTAGCTT 919178 Query 213257 CTTGGCCTCTGGGGA--CGT---GA-AGGGCATCATCATGCGTTGGAACACATCAGCCAG 213310 | |||||| | ||| || || |||||| ||| ||| |||| |||| Sbjct 919179 TTGAGCCTCTTCGCTTTCGTACGGATAGCGCATCAGGATG------AACGCATCGGCCAT 919232 Query 213311 CCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA---CTTGGAGCACTCCTC 213367 || || || ||||| ||||| || ||||| | || || || ||| ||| |||| Sbjct 919233 GCCTTGCACGCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTT--AGC-CTCCGG 919289 Query 213368 CAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACT---TTGGT 213424 || ||| || | ||| || ||||| ||||| || ||||| || |||| || | Sbjct 919290 CACGGGATAGTAATTGACATCAATGATTTTGTTCAGATTGCGCGT---CACTGTCTTAGC 919346 Query 213425 GACATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGC---ACAAACTCAGG 213481 ||| | ||| | | | | | |||| ||| ||| |||||| Sbjct 919347 GACTTCCTTCAGCT--TTGCAAAGTCATACGTTTT----GTCTTGCTTTACAAACATGTT 919400 Query 213482 CAGGGCGATGCTGGCCAGGTTGCAAACGGCCACCTC---CTGAGAGTCTGTGTACTCCAT 213538 || |||||| |||||| ||||| || || ||||| || || | |||||||| Sbjct 919401 CAAGGCGATCGAGGCCAGATTGCATACCGCTACCTCATCCTTCGAC---GAGTACTCCAC 919457 Query 213539 GATCTCGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTG- 213597 ||||| ||||||| |||| ||| ||||||||| | ||||| ||||| ||||| Sbjct 919458 AATCTCAGTGCACAAGTTGGAACATTTGATGGTGCCGATATTCTGCTGGTT--ACTTTTA 919515 Query 213598 CGTTGGCA-GAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGT 213656 || | ||| | ||||||||| |||||||| || ||||| || | || || | | | Sbjct 919516 CGATTGCAAGCATCCTTGTACAGCATGTACGGCACGCCGGTTTCCACTTGCGATTCGATT 919575 Query 213657 ATCTGGCTCCAGAGGTACCTG-GCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTC 213715 ||| ||| || | |||| ||||| ||| ||| | | ||| | | | ||| Sbjct 919576 ATCGCAAACCACAGAT-CCTGCGCCTTCACCTGTCGCATAA-AGCGACCCTCTTT--CTC 919631 Query 213716 GTACTGTTCGTAGAGCTCGTTGAATTCGTGGCCCCAGACCCTGTCC---AGTCCCGGACA 213772 |||| ||| |||| | ||| || | ||||||| ||||| || || ||||| Sbjct 919632 GTACCCCGTGTACAGCTTCTCGAACTCTTCGCCCCAGG---TGTCCGATAGCCCGGGACA 919688 Query 213773 GGA-TGCGGGACACATGAGGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGG 213830 |||||| ||||| |||||||| ||| | ||| || | ||||||||||||| Sbjct 919689 ATCGTGCGGG-CACATCAGGCTCCACATTTCGTTCGCCTCC-ACACGCTGCATGAACAGG 919746 Query 213831 TCCGGGACCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTT 213890 ||||| | |||||| ||| |||| ||||| | | ||| ||| || | |||| Sbjct 919747 TCCGGTATCCACAGTGCGTAAAACATGTCCCGTGCGCGGACCTCCTCCTTGCCGGTGTTT 919806 Query 213891 TTGCGCAGATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAG 213950 || |||||| ||||| || || || || | ||||||||||| | |||||||| || Sbjct 919807 TTCTTCAGATCGAGAAACTCGAATATATCGCCATGCCACGGCTCGAGATAGATGGCGAAT 919866 Query 213951 GCGCCCGGCCTCTTG---CCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGC 214007 || || |||| |||| |||||||| || || || ||| ||||| ||| |||| Sbjct 919867 GCTCCAGGCCGCTTGTTACCGCCCTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGC 919926 Query 214008 AGGACGGGTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCC 214067 | | || ||||| ||||| || ||||| || || | || |||| || || Sbjct 919927 AACATCGGCACCAGACCGTTTGAAATCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCG 919986 Query 214068 CTCAGGTTGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGC 214127 | | | || | || || ||||||||||| |||| || || | ||| || || Sbjct 919987 CGAATACAGTGCACGTTCAGTCCGATGCCACCGGCCGACTTTGAAATTAGGGCACACTGC 920046 Query 214128 CTCACAGTCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTC 214187 ||| || || |||||| | ||||| || || | | | ||| || ||||||| | Sbjct 920047 TTCAGCGTGTCGTAGATGCCCTCAATGCTATCTTCGGACATGGTCAACAGGAAGCAGGAC 920106 Query 214188 GAGAGCTGGGG 214198 || |||||||| Sbjct 920107 GAAAGCTGGGG 920117 >seq2001 Length=1904535 Score = 159 bits (176), Expect = 6e-34 Identities = 284/414 (69%), Gaps = 3/414 (1%) Strand=Plus/Minus Query 47953 CAGCAGGTGATCCGCGACGTACTCGATGTATTTTGACATGAGGGTGATGTTCATGCCTAT 48012 ||||| |||| || || |||| ||||| | ||||| || | ||||||||| | Sbjct 1560512 CAGCAAACGATCGGCCACAAACTCAATGTACTGCGACATCAGATCGCAGTTCATGCCCAG 1560453 Query 48013 GAGGGACACGGGCAAAGCCTTTGTGAGAAACTCCTTCTCTATCTGCACGGCTTCCCCCAC 48072 | ||| |||| ||||| || || ||||||| ||| ||| | || || || | | Sbjct 1560452 CATATCCACCGGCAGTGCCTTCGTCAGGAACTCCTGCTCGATCAGGACCGCATCGCGGAT 1560393 Query 48073 AATCTGCTTAACGCGGGACTCTGAGGGTTTGTTGCGCAGGTGCTTGGCATAGAGCATGCA 48132 |||| | | ||||| || || || || | ||| | |||| | | || ||| Sbjct 1560392 GATCTCCGTCACGCGCTCCTTCGACGGCTTCTGCACCAGATACTTGA---ACATCAGGCA 1560336 Query 48133 GGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAGACC 48192 ||||||||| | ||||| |||||||| || ||| ||| |||| |||||| ||| || Sbjct 1560335 GGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTGAGTCC 1560276 Query 48193 AGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAAGAT 48252 ||||| | || | | || |||||||| || || ||||| ||| ||||||||| Sbjct 1560275 TGGCATCAGGCCACGTTTCTTCAGCCAGAAGATCGCGGCGAAGCTGCCGCTGAAGAAGAT 1560216 Query 48253 GCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGAGAT 48312 ||||| || || ||||| || || || ||| || || || |||||| ||||| Sbjct 1560215 ACCCTCAACCGCAGCGAATGCCACGACCCGCTCGCCAAAGTTGGCCTTCTTGCTCGAGAT 1560156 Query 48313 CCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 |||| ||||||||||| |||||| ||| | ||| |||| ||| || ||||| Sbjct 1560155 CCAGTTCAGCGCCCAGTCCGCCTTCCGCTTCACGCACGGCAGCGTTTCGATGGC 1560102 Score = 120 bits (132), Expect = 6e-22 Identities = 167/234 (71%), Gaps = 0/234 (0%) Strand=Plus/Minus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 ||||||||| ||||||||| || || || |||||||| ||||||||| | ||||| Sbjct 1559938 GTACATCTCGCTGTGCACATTTTCCATCGCAATCTGGAAGCCGTAGAAGCAGCGCGCCTC 1559879 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 |||||||| || | ||| | |||| ||||||||| || || || || || || Sbjct 1559878 CGTAACCTGCACCTCCTGGCTGAAGCGTTCCACCAGATTCTCGTTCACGATACCGTCGGA 1559819 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 |||||||||||||| || || || | ||| ||||| ||| | | | || | | Sbjct 1559818 CGCAGCAAAGAAGGCCAGCACGTGGGAGATGAAGTGGCGTTCGCTCGGTTTCAGCGACTC 1559759 Query 48604 CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 ||| ||| | || ||| ||| || ||||||||||| ||||||||||| || Sbjct 1559758 CCAATCCTTCATATCCTTGGACAGATCAACTTCTTCCACCGTCCAGAAGGAAGC 1559705 >seq2236 Length=1503152 Score = 95.1 bits (104), Expect = 2e-14 Identities = 102/135 (76%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 ||| ||| ||||||| ||||||||| || |||||| || || || ||| ||||| Sbjct 978659 CTTCAGCTCCTTCACCCGGTCCTCCAGCTTCGAGATGCGCTCGAGCTTCCGCTTCCGGCA 978600 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 |||| ||| || | |||||||| || | ||| || ||| ||||||||| ||||| Sbjct 978599 CTTGGAGGCGGCGACCCGGTTCCGCAGCCGCTTGCGCTCCAGCTTGATGCGCTCCTGCGA 978540 Query 241609 CTCCATGTCGATCGG 241623 ||||||||||||||| Sbjct 978539 CTCCATGTCGATCGG 978525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931499928536320