Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq2381 159 6e-34 seq2001 123 5e-23 >seq2381 Length=1337761 Score = 159 bits (176), Expect = 6e-34 Identities = 382/570 (67%), Gaps = 11/570 (2%) Strand=Plus/Plus Query 221713 GGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAGAG 221772 |||||| || || || || ||||| ||||| | |||| | ||||| || || | Sbjct 919413 GGCCAGATTGCATACCGCTACCTCATCCTTCGACGAGTACTCCACAATCTCAGTGCACAA 919472 Query 221773 GTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCCTT 221832 |||| || |||||||| || | | | || ||| || |||||| ||| ||||| Sbjct 919473 GTTGGAACATTTGATGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTT 919532 Query 221833 GTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGTTC 221892 ||| ||||| | || |||| || |||| || | | | ||| ||| || || Sbjct 919533 GTACAGCATGTACGGCACGCCGGTTTCCACTTGCGATTCGATTATCGCAAACCACAGATC 919592 Query 221893 TCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAGCA 221951 ||| || ||||| | | | | |||||| ||| | ||||| || || ||| Sbjct 919593 -CTGCGCCTTCACCTGTCGCATAAAGCGACCCTCTTTCT---CGTACCCCGTGTACAGCT 919648 Query 221952 TGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTG-GCGGGACACATCAGA 222010 | || |||| ||| || | | || || || ||||| | ||||| |||||||| Sbjct 919649 TCTCGAACTCTTCGCCCCAGGTGTCCGATAGCCCGGGACAATCGTGCGGG-CACATCAGG 919707 Query 222011 CTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTGA 222070 ||||| | ||| | | || | ||||||||| |||||||| |||||||| || | | Sbjct 919708 CTCCACATTTCGTTCGCCTCCACACGCTGCATGAACAGGTCCGGTATCCACAGTGCGTAA 919767 Query 222071 AAGAGATCTCTGGTCCGCTG--CTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACT 222128 || | || | || ||| | ||||||| |||| |||||||| ||||||| | ||||| Sbjct 919768 AACATGTCCC--GTGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACT 919825 Query 222129 CAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGC 222188 | || || || | ||||||||||| ||||||| ||| | || || || |||||||| | Sbjct 919826 CGAATATATCGCCATGCCACGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTAC 919885 Query 222189 CACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGT 222248 | |||||||| || || || | |||| ||| ||| | |||| ||||| |||| Sbjct 919886 CGCCCTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAACATCGGCACCAGACCGT 919945 Query 222249 TGGATCGACCGTTGGTGCCCTTAATGTACG 222278 | || ||||| || || ||||||| Sbjct 919946 TTGAAATCCCGTTCGTACCGGAGATGTACG 919975 >seq2001 Length=1904535 Score = 123 bits (136), Expect = 5e-23 Identities = 186/261 (71%), Gaps = 4/261 (2%) Strand=Plus/Plus Query 25775 AGAGAGATCGGCTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGT 25834 |||||| || ||||| ||||||||| | || || | ||| |||||||| | Sbjct 1560084 AGAGAGTTC--CTGTTCAATGCCATCGAAACGCTGCCGTGCGTGAAGCGGAAGGCGGACT 1560141 Query 25835 GGGCCATGAAGTGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTG 25894 |||| |||| |||||| ||| ||| || | |||||||||||| | || || || | Sbjct 1560142 GGGCGCTGAACTGGATCTCGAGCAAGAAGGCCAACTTTGGCGAGCGGGTCGTGGCATTCG 1560201 Query 25895 CTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGA 25954 |||| || ||||| ||||| |||||||| || || || ||||||||||| ||| | | Sbjct 1560202 CTGCGGTTGAGGGTATCTTCTTCAGCGGCAGCTTCGCCGCGATCTTCTGGCTGAAG-AAA 1560260 Query 25955 AGGGGAC-CATGCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTC 26013 | || | ||||| || || ||| || |||||||| ||| | ||||| || || Sbjct 1560261 CGTGGCCTGATGCCAGGACTCACCTTCTCGAACGAGCTGATCTCGCGCGACGAAGGGCTG 1560320 Query 26014 CACAGAGATTTTGCCTGCCTG 26034 ||| | || |||||||||||| Sbjct 1560321 CACTGCGACTTTGCCTGCCTG 1560341 Score = 109 bits (120), Expect = 1e-18 Identities = 164/229 (72%), Gaps = 8/229 (3%) Strand=Plus/Plus Query 25512 CTGGACCGCCGAAGAGATTGATCTGGCCAAGGACATGGACGGCTGGTA--CGCTCTATCC 25569 |||||| | ||||| |||||||| ||||||| ||| | | ||| | |||| | || Sbjct 1559713 CTGGACGGTGGAAGAAGTTGATCTGTCCAAGGATATGAAGGATTGGGAGTCGCTGAAACC 1559772 Query 25570 AAAGACGAGCAGCATTTTCTCAAGTACGTGTTGGCATTCTTTGCAGCCTCTGATGGTATA 25629 | ||| | || || || ||||| |||| |||||||| || || || ||||| Sbjct 1559773 GAG--CGAACGCCACTTCATCTCCCACGTGCTGGCCTTCTTTGCTGCGTCCGACGGTATC 1559830 Query 25630 GTGAACGAGAATCTGTGCGAGAGATTCACCAGGGAAGTGCAG--TACGTGGAGGCCAAGT 25687 ||||||||||||||| || | |||| | ||| |||||| ||| |||||| | Sbjct 1559831 GTGAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTGCAGGTTAC--GGAGGCGCGCT 1559888 Query 25688 GTTTCTACGGTTTCCAGATGGCCATCGAAAATGTGCACTCTGAGGTGTA 25736 | |||||||| |||||||| || || |||||||||||| ||| |||| Sbjct 1559889 GCTTCTACGGCTTCCAGATTGCGATGGAAAATGTGCACAGCGAGATGTA 1559937 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928812023389120