Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq224 111 1e-18 seq968 95.1 8e-14 seq2787 87.8 1e-11 >seq224 Length=3387546 Score = 111 bits (122), Expect = 1e-18 Identities = 158/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || |||||||| || ||| || | ||||| || | || || Sbjct 1793639 ACGCAGACGGAGCACCAGATGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGACAGGGT 1793698 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | |||||| || ||||||||||| || || ||||| || ||||| || || ||||| Sbjct 1793699 GCGGCCATCTTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCC 1793758 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAG-TGTGTGAAGTTTCAA 480729 |||||||| || |||||| ||||| ||||| ||||| | || | || || | Sbjct 1793759 CTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATCGTATCCGATGGCTCAA-CCTCCA 1793817 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 | || || || || ||||| ||||| || |||||||| || Sbjct 1793818 GAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTG 1793857 Score = 98.7 bits (108), Expect = 6e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || |||||||| || || || | ||||| || | || || Sbjct 1793867 ACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGT 1793926 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | ||| || || ||||||||||| || || ||||| || ||||| || || ||||| Sbjct 1793927 GCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCC 1793986 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 |||||||| || ||||| || ||| ||||| ||||| | || || || Sbjct 1793987 CTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCGGATGGTTCGACCTCGAG 1794046 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||| || || || ||||| ||||| || |||||||| || Sbjct 1794047 GGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTG 1794085 >seq968 Length=268288 Score = 95.1 bits (104), Expect = 8e-14 Identities = 125/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 299114 GAAGAAGAGATTAAAAAAGCTTATAAAAAATTAGCTATGAAATATCATCCTGACAGAAAT 299173 || ||||| || ||||||||||| ||||||||| | ||||||||||| |||| ||| Sbjct 235250 GATGAAGACATCAAAAAAGCTTACCGAAAATTAGCGCTAAAATATCATCCAGACAAAAAC 235191 Query 299174 AAAAGTCCTGAAGCGGAAGAAAAGTTTaaaaaaaTAAGTCATGCTTATAGTATTCTT-TC 299232 ||| |||| || || |||||||||||| || | | | || || | | | || || Sbjct 235190 AAATCACCTGGGGCAGAGGAAAAGTTTAAAGAAGTTGCTGAAGCATA-CGAAGTGTTGTC 235132 Query 299233 AGATCCAACCAAAAAAGAAGTATATGATAAATTTGGAGAAGAAGGATTAAA 299283 ||| | ||| ||| | |||||||||||||| ||||| |||||||| Sbjct 235131 CGATAAGAAGAAACGTGAAATGTATGATAAATTTGGTGAAGATGGATTAAA 235081 >seq2787 Length=22504 Score = 87.8 bits (96), Expect = 1e-11 Identities = 116/161 (72%), Gaps = 0/161 (0%) Strand=Plus/Plus Query 817100 GATTTTTCATCTCCAAATATTGCAAAGGAAATGCATATTGGACACTTGAGATCTACAATA 817159 |||||||| || || || | || || ||||||||| | || || || | || || || Sbjct 19584 GATTTTTCCTCGCCTAACGTAGCGAAAGAAATGCATGTCGGTCATTTACGTTCGACCATC 19643 Query 817160 ATTGGTGAATCTCTTTGTAGAATATATGAATTTTGTGGATGTGAAGTACAAAGAATAAAT 817219 |||||||| || ||||| || | | |||| | ||| || || | | || || Sbjct 19644 ATTGGTGATTCAATTTGTCGATTTTTGGAATATCTCGGACACGATGTGCTTCGTATTAAC 19703 Query 817220 CATATTGGTGATTGGGGAACACAATTTGGTATGTTAATTGC 817260 ||||| || || |||||||| |||||||||||||||||||| Sbjct 19704 CATATCGGAGACTGGGGAACGCAATTTGGTATGTTAATTGC 19744 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268058107832804