Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq557 129 7e-24 seq2001 127 2e-23 seq1335 122 1e-21 seq1 118 1e-20 seq2381 105 8e-17 >seq557 Length=2483616 Score = 129 bits (142), Expect = 7e-24 Identities = 211/298 (71%), Gaps = 6/298 (2%) Strand=Plus/Plus Query 1573895 GGGTCCGCCCGGCACGGGCAAGACCACGAGCATCGCGTGTCTGGCGCGTGTCCT-CTTGG 1573953 |||||| || || |||||| || || | |||| || ||||| || |||| || || Sbjct 1415777 GGGTCCCCCGGGTGTGGGCAAAACGACAACCATCCTCTGCCTGGCACGCATCCTGCTCGG 1415836 Query 1573954 GCGCGGCCGCCGACGAGGCCGTGCTCGAACTCAACGCGTCGGACGAGCGCGGCGTCGACG 1574013 || | | ||| ||||||||||||||| || ||||| || |||||||||| |||| | Sbjct 1415837 GCCCAACTTCCG-CGAGGCCGTGCTCGAGCTGAACGCTTCCAACGAGCGCGGTATCGATG 1415895 Query 1574014 TCGTGCGCAAGATCATCAAGCACCACGC-CTCCAAGAGG-ATCGACCTGCCGCCCGGACG 1574071 | || |||| | ||||| || | || ||| | || ||||| | ||| || Sbjct 1415896 TGGTACGCAGCAAGATCAAAATGTTTGCGCAACAGAAGGTAACG--CTGCCCCGCGGCCG 1415953 Query 1574072 CCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGGCCCT 1574131 |||||| | | ||||| ||||| || ||| || | ||| || |||||||||||| || Sbjct 1415954 GCACAAGATCGTAATCCTGGACGAAGCGGACAGCATGACGGAGGGGGCCCAGCAGGCGCT 1416013 Query 1574132 GCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACACG 1574189 ||| || ||||||| | | |||||| ||||||||||| || || ||||| ||| Sbjct 1416014 TCGGCGAACGATGGAAATCTATAGCAACACAACGCGCTTTGCGCTAGCCTGCAATACG 1416071 >seq2001 Length=1904535 Score = 127 bits (140), Expect = 2e-23 Identities = 161/221 (73%), Gaps = 9/221 (4%) Strand=Plus/Minus Query 869180 CCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTTC 869239 ||||||||||| ||||| ||||| |||| ||| || ||||| ||||| || ||| Sbjct 1560316 CCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTGAGTCCTGGCATCAGGCCACGTTTC 1560257 Query 869240 TTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 869299 || ||||| ||||| ||| ||| ||||| ||| ||||| ||||| || || || || Sbjct 1560256 TTCAGCCAGAAGATCGCGGCGAAGCTGCCGCTGAAGAAGATACCCTCAACCGCAGCGAAT 1560197 Query 869300 CCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTT---GATCCACTTCATCGCC 869356 | | || ||||||| ||||| | | ||| |||| | |||||| |||| |||| Sbjct 1560196 GCCACGACCCGCTCGCCAAAGTT------GGCCTTCTTGCTCGAGATCCAGTTCAGCGCC 1560143 Query 869357 CAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGC 869397 ||||| ||||| | |||| |||||| ||| |||||||| Sbjct 1560142 CAGTCCGCCTTCCGCTTCACGCACGGCAGCGTTTCGATGGC 1560102 Score = 105 bits (116), Expect = 8e-17 Identities = 160/224 (71%), Gaps = 8/224 (4%) Strand=Plus/Minus Query 868789 CTTTTCGCATCCGAGCGACGCG-AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACA 868847 ||| ||||| || ||| || | |||| || ||||| |||||||| |||||||| ||| Sbjct 1560533 CTTCTCGCAGCCCAGCT-CGAGCAGCAAACGATCGGCCACAAACTCAATGTACTGCGACA 1560475 Query 868848 TGAGGCCGGCGTTCATGCCGATGAGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCT 868907 | || || ||||||||| | | |||||||||| | || ||| ||||| | || Sbjct 1560474 TCAGATCGCAGTTCATGCCCAGCATATCCACCGGCAGTGCCTTCGTCAGGAACTCCTGCT 1560415 Query 868908 CGATCTCGACGGCCTCGACGATGATCTGCCTGGGCACG---TCGGCCGAGGGCTTGTTGA 868964 ||||| ||| || ||| |||||||| | | |||| || ||| ||||| | | Sbjct 1560414 CGATCAGGACCGCATCGCGGATGATCTCCGT---CACGCGCTCCTTCGACGGCTTCTGCA 1560358 Query 868965 CGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAGTGCAACCCT 869008 | || | || | | ||||||||||||||||||||||| |||| Sbjct 1560357 CCAGATACTTGAACATCAGGCAGGCAAAGTCGCAGTGCAGCCCT 1560314 >seq1335 Length=2098954 Score = 122 bits (134), Expect = 1e-21 Identities = 144/195 (74%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 1592106 AGAAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCA 1592165 ||||||||||||| |||||| ||||||| || || | || || ||| || Sbjct 1436236 AGAAGCGCACCGATGACATCAGCTCGTGGGATGCCGACTTCCTGAAGGTGGACCAGGGCA 1436177 Query 1592166 CCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTG 1592225 |||| || ||| ||||||| ||||| ||||| || ||||||||| ||||| || | Sbjct 1436176 CCCTGTTCGAGCTGATCCTGGCCGCGAACTATCTGGACATCAAGGGGCTGCTGGACGTGA 1436117 Query 1592226 GGTGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCT 1592285 ||||| | ||||| ||||||||||||||||| | || || ||||| ||||| || | Sbjct 1436116 CCTGCAAAACGGTGGCGAACATGATCAAGGGCAAAACCCCGGAAGAGATTCGCAAAACGT 1436057 Query 1592286 TTAACATCAAGTACG 1592300 | ||||||||| ||| Sbjct 1436056 TCAACATCAAGAACG 1436042 >seq1 Length=6256182 Score = 118 bits (130), Expect = 1e-20 Identities = 212/298 (71%), Gaps = 19/298 (6%) Strand=Plus/Plus Query 733017 GTGGTGGTGACGCGCAACGGCGACGGCGCCAACGCCGTCAAGATC-GTG-ACGCGCGCCA 733074 ||| || |||||| |||| |||| ||| ||| | ||||||| ||| |||| || Sbjct 3619166 GTGATGCTGACGCTCAACAGCGAGGGCTACAAGTTCTGCAAGATCCGTGTACGCTCGG-- 3619223 Query 733075 TGCGCCAGCCCG-AGTTGGGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTG 733133 | || | |||| || | |||||||| | ||||||||||||| || || || || ||| Sbjct 3619224 TTCGT-ATCCCGCAGATTGGCGACAAGTTTGCGTCGCGCCACGGACAGAAAGGTAC-GTG 3619281 Query 733134 GG-----CAGCGTGCGCTCCACCGAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGC 733188 | ||| | | ||| ||||||||||| | || | | ||| ||| |||| Sbjct 3619282 CGGTATACAGTAT---CGCCAG-GAGGACATGCCGT--TCAC-GTGCGAGGGCATTACGC 3619334 Query 733189 CCGACATCGTGATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCG 733248 | |||||| | || |||||||||||||||||||| || |||||||| || | || ||| Sbjct 3619335 CGGACATCATCATTAACCCGCACGCCATCCCGTCCCGTATGACCATTGGGCATTTGATCG 3619394 Query 733249 AGGCCCTCCTGGGCAAGGTGGCCTGCCGCGAGGGCTACATCGGCGACGGCACGCCCTT 733306 || | ||| ||||||| ||| || | ||||| | |||||||||| |||||| || Sbjct 3619395 AGTGCATCCAGGGCAAGCTGGGCTCGAACAAGGGCGAAATCGGCGACGCCACGCCGTT 3619452 >seq2381 Length=1337761 Score = 105 bits (116), Expect = 8e-17 Identities = 135/186 (73%), Gaps = 0/186 (0%) Strand=Plus/Plus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || ||| |||||||| || ||||| | ||| ||||||| | ||| ||||| || ||||| Sbjct 919887 GCCCTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAACATCGGCACCAGACCGTT 919946 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 || ||||| || || | | ||| | || ||||| | |||| || | Sbjct 919947 TGAAATCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGAATACAGTGCACGTTCAG 920006 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 |||||||| ||||||||||| || || || || ||||| || ||||||||||||||||| Sbjct 920007 TCCGATGCCACCGGCCGACTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCC 920066 Query 1630242 CTCGAT 1630247 ||| || Sbjct 920067 CTCAAT 920072 Score = 89.7 bits (98), Expect = 6e-12 Identities = 112/154 (73%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 1628447 GCATAAAGAGGTCACACGTCCACAGTGCGTAAAAGAGGTCGCGCGCCCGGTTCTCCTCCT 1628506 |||| || ||||| |||||||||||||||| | ||| || || ||| |||||||| Sbjct 919736 GCATGAACAGGTCCGGTATCCACAGTGCGTAAAACATGTCCCGTGCGCGGACCTCCTCCT 919795 Query 1628507 TGCCGTGGTTCTTTTTGAGGTCGAGCCAGTCGACAATGTCGGCGTGCCACGGCTCCAGGT 1628566 ||||| ||| || || || ||||| | |||| || ||| | ||||||||||| || | Sbjct 919796 TGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATATATCGCCATGCCACGGCTCGAGAT 919855 Query 1628567 AGCAGGCAAAGGCGCCCTTGCGCTTGCCGCCGCC 1628600 || ||| || || || |||||| ||||| Sbjct 919856 AGATGGCGAATGCTCCAGGCCGCTTGTTACCGCC 919889 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106907531399891