Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq557 141 1e-27 seq2001 111 2e-18 seq1335 111 2e-18 seq1 107 3e-17 seq2381 105 1e-16 >seq557 Length=2483616 Score = 141 bits (156), Expect = 1e-27 Identities = 247/355 (70%), Gaps = 6/355 (2%) Strand=Plus/Plus Query 2019047 GGGCAAGACCACGAGCATCGCGTGCCTGGCGCGCGTGCT-CTTGGGCGCGGCCGCCGACG 2019105 |||||| || || | |||| |||||||| ||| | || || |||| | | ||| || Sbjct 1415792 GGGCAAAACGACAACCATCCTCTGCCTGGCACGCATCCTGCTCGGGCCCAACTTCCG-CG 1415850 Query 2019106 AGGCCGTGCTCGAACTCAATGCGTCAGACGAGCGCGGCGTGGACGTCGTGCGTAGAATCA 2019165 ||||||||||||| || || || || |||||||||| | || || || || || | | Sbjct 1415851 AGGCCGTGCTCGAGCTGAACGCTTCCAACGAGCGCGGTATCGATGTGGTACGCAGCAAGA 1415910 Query 2019166 TCAAGCA--TCACGCTTCGAAAAGAATCGACCTGCCGCCCGGCCGCCACAAGGTGATCAT 2019223 |||| | ||| | || | | || ||||| | |||||| |||||| | | || Sbjct 1415911 TCAAAATGTTTGCGCAACAGAAGGTAACG--CTGCCCCGCGGCCGGCACAAGATCGTAAT 1415968 Query 2019224 CCTCGATGAGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGA 2019283 ||| || || || ||| || | ||| || |||||||||||| || || || ||||| Sbjct 1415969 CCTGGACGAAGCGGACAGCATGACGGAGGGGGCCCAGCAGGCGCTTCGGCGAACGATGGA 1416028 Query 2019284 AAAGTACACCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGA 2019343 || || | |||||| ||||| |||||||| |||||||| ||| | | ||||||| Sbjct 1416029 AATCTATAGCAACACAACGCGCTTTGCGCTAGCCTGCAATACGAGCGAAAAGATCATCGA 1416088 Query 2019344 AGCCCTCCAGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCAG 2019398 | | ||||| ||| || || || ||||||| || || |||| |||||| Sbjct 1416089 ACCGATCCAGTCCCGGTGTGCGATGCTGCGCTTCTCGAAGCTATCCGATGCCCAG 1416143 >seq2001 Length=1904535 Score = 111 bits (122), Expect = 2e-18 Identities = 158/220 (72%), Gaps = 7/220 (3%) Strand=Plus/Minus Query 794341 CCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTTC 794400 ||||||||||| ||||| ||||| ||| ||| || ||||| ||||| || ||| Sbjct 1560316 CCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGTGAGTCCTGGCATCAGGCCACGTTTC 1560257 Query 794401 TTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAAG 794460 || ||||| ||||| || ||| ||||| ||| ||||| ||||| || || || || Sbjct 1560256 TTCAGCCAGAAGATCGCGGCGAAGCTGCCGCTGAAGAAGATACCCTCAACCGCAGCGAAT 1560197 Query 794461 CCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTT--TGTTGATCCACTTCATCGCCC 794518 | |||| |||||| || ||||| |||| |||| | |||||| |||| ||||| Sbjct 1560196 GCCACGACCCGCTC-GCCAAAGT----TGGCCTTCTTGCTCGAGATCCAGTTCAGCGCCC 1560142 Query 794519 ACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATGGC 794558 | || ||||| | |||| | |||| ||| |||||||| Sbjct 1560141 AGTCCGCCTTCCGCTTCACGCACGGCAGCGTTTCGATGGC 1560102 Score = 95.1 bits (104), Expect = 2e-13 Identities = 159/225 (71%), Gaps = 10/225 (4%) Strand=Plus/Minus Query 793997 CTTCTCGCACCCGAGC--GACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCAC 794054 ||||||||| || ||| || ||| ||| || ||||| || || ||||||||||| || Sbjct 1560533 CTTCTCGCAGCCCAGCTCGA-GCA-GCAAACGATCGGCCACAAACTCAATGTACTGCGAC 1560476 Query 794055 ATGAGGGCGGCGTTCATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTC 794114 || || || ||||||||| | | |||| ||||| | || | | ||||| | | Sbjct 1560475 ATCAGATCGCAGTTCATGCCCAGCATATCCACCGGCAGTGCCTTCGTCAGGAACTCCTGC 1560416 Query 794115 TCGATCTCGACGGCCTCGATGATGATCTGCCTGGGCACG---TCGGACGACGGCTTGTCG 794171 |||||| ||| || ||| |||||||| | | |||| || ||||||||| | Sbjct 1560415 TCGATCAGGACCGCATCGCGGATGATCTCC---GTCACGCGCTCCTTCGACGGCTTCTGC 1560359 Query 794172 ACGAGCATCGTGTAGAGCAGGCAGGCAAAGTCGCAATGCAGACCT 794216 || || | || | | |||||||||||||||||| ||||| ||| Sbjct 1560358 ACCAGATACTTGAACATCAGGCAGGCAAAGTCGCAGTGCAGCCCT 1560314 >seq1335 Length=2098954 Score = 111 bits (122), Expect = 2e-18 Identities = 142/196 (72%), Gaps = 0/196 (0%) Strand=Plus/Minus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625 || ||||||||||| ||||| ||||||| | ||| |||| ||||| | Sbjct 1436237 GAGAAGCGCACCGATGACATCAGCTCGTGGGATGCCGACTTCCTGAAGGTGGACCAGGGC 1436178 Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 ||||| || ||| ||||||| ||||| ||||| || ||||||||| || || || || Sbjct 1436177 ACCCTGTTCGAGCTGATCCTGGCCGCGAACTATCTGGACATCAAGGGGCTGCTGGACGTG 1436118 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 ||||| || ||||| ||| | ||||||||||| | || || || || ||||| || Sbjct 1436117 ACCTGCAAAACGGTGGCGAACATGATCAAGGGCAAAACCCCGGAAGAGATTCGCAAAACG 1436058 Query 2035746 TTTAACATCAAGTACG 2035761 || ||||||||| ||| Sbjct 1436057 TTCAACATCAAGAACG 1436042 >seq1 Length=6256182 Score = 107 bits (118), Expect = 3e-17 Identities = 166/230 (72%), Gaps = 14/230 (6%) Strand=Plus/Plus Query 653648 CCCG-AGGTGGGCGACAAACTGTCGTCGCGCCACGGGCAAAAGGGCACCGTGGG-----C 653701 |||| || | |||||||| | ||||||||||||| || || || || ||| | | Sbjct 3619231 CCCGCAGATTGGCGACAAGTTTGCGTCGCGCCACGGACAGAAAGGTAC-GTGCGGTATAC 3619289 Query 653702 AGCGTGCGCTCGACCGAGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGACATC 653761 || | ||| | ||||| ||||||| || | | ||| |||| ||||| |||||| Sbjct 3619290 AGTAT-CGCCAG---GAGGACATGCCGT--TCAC-GTGCGAGGGCATTACGCCGGACATC 3619342 Query 653762 GTCATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGCCCTC 653821 |||| |||||||||||||||||||| || |||||||| || | |||| ||| | || Sbjct 3619343 ATCATTAACCCGCACGCCATCCCGTCCCGTATGACCATTGGGCATTTGATCGAGTGCATC 3619402 Query 653822 CTGGGCAAGGTGGCCTGCCGCGAGGGCTACGTGGGCGACGGCACCCCGTT 653871 | ||||||| ||| || | ||||| | | ||||||| ||| ||||| Sbjct 3619403 CAGGGCAAGCTGGGCTCGAACAAGGGCGAAATCGGCGACGCCACGCCGTT 3619452 >seq2381 Length=1337761 Score = 105 bits (116), Expect = 1e-16 Identities = 171/245 (70%), Gaps = 1/245 (0%) Strand=Plus/Plus Query 2073537 GCACTGGTCGACATAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACAAGGCCGTT 2073596 || ||| ||||| || || ||||| | ||| ||||||| | ||| ||||| || ||||| Sbjct 919887 GCCCTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAACATCGGCACCAGACCGTT 919946 Query 2073597 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCCGAGGCGCGCACCTTGTGCGCGGCAAA 2073656 || ||||| || || | | ||| | ||| ||||| | |||| || | Sbjct 919947 TGAAATCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGAATACAGTGCACGTTCAG 920006 Query 2073657 GCCGATGCCGCCGGCCGCCTTGGAGATGAGCGCGCACTTTTTCAGCGTCTCGTAGATGCC 2073716 |||||||| ||||||| ||| || || || || |||| |||||||| ||||||||||| Sbjct 920007 TCCGATGCCACCGGCCGACTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCC 920066 Query 2073717 CTCGATCGAGTCGGCCTTCATGTCCAACAGAAAGCACGACGAGTTTTGCGGGCGCGCCGT 2073776 ||| || || | |||| |||||| ||||| ||||| || |||||| ||| Sbjct 920067 CTCAATGCTATCTTCGGACATGGTCAACAGGAAGCAGGACGAAAGCTGGGGGCGCTGCGT 920126 Query 2073777 -GCCG 2073780 |||| Sbjct 920127 AGCCG 920131 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915946104614297