Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq113 152 3e-32 seq224 145 5e-30 >seq113 Length=3238079 Score = 152 bits (168), Expect = 3e-32 Identities = 164/215 (76%), Gaps = 4/215 (2%) Strand=Plus/Minus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| ||||| |||| ||| ||||||||| ||||| ||||| || || |||| |||| Sbjct 854919 CAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCATC 854860 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| |||||||||||||| || ||||| ||| |||| | ||||||||||| Sbjct 854859 CTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTC 854800 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || || || || || || |||| || || |||||| |||| ||| ||| Sbjct 854799 CTGGATCTTCGCCTTCAC--ATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATG 854742 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||| ||||||||||| || || ||||||||||| Sbjct 854741 GTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 854707 Score = 127 bits (140), Expect = 1e-24 Identities = 159/216 (74%), Gaps = 4/216 (2%) Strand=Plus/Plus Query 34765 CAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATC 34824 ||| ||||| |||| ||| |||||||||||||| ||||| || || |||| |||| Sbjct 1949094 CAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCATC 1949153 Query 34825 GTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34884 ||||| ||||| |||||||||||||| || ||||| ||| | || | || |||||||| Sbjct 1949154 CTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTC 1949213 Query 34885 GTTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATG 34942 | || ||| || || || || |||| || | |||||| |||| || ||| Sbjct 1949214 CTGGATCTTTGCCTTCAC--ATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATG 1949271 Query 34943 GTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATG 34978 ||||| || ||||| || || || || ||||||||| Sbjct 1949272 GTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCATG 1949307 >seq224 Length=3387546 Score = 145 bits (160), Expect = 5e-30 Identities = 173/232 (75%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 34747 ATTTCCTCCCCTCAACCTCAGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTC 34806 |||||| || | || | || ||||| |||| ||| |||||||| ||||||||||| Sbjct 1793630 ATTTCCACCACGCAGACGGAGCACCAGATGAAGAGTGGATTCCTTCTGGATGTTATAGTC 1793689 Query 34807 CGATAGGCTGCGCTCATCGTCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTG 34866 ||| ||| |||| |||| ||||| |||||||| ||||||||||| || ||||| ||| | Sbjct 1793690 CGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGG 1793749 Query 34867 CGGCACCCCCTCCTTGTCGTTTATTTTTTGTTTGACGGATGCTATCG-ATTCATTGGCCT 34925 ||| | ||||||||||| | || ||| |||||| | |||| || | ||| || Sbjct 1793750 CGGGATTCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATCGTATCCGATGG-CT 1793808 Query 34926 CGACATCAACGGTTATGGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 | || || | || ||||||||||| || || || || || || |||||||| Sbjct 1793809 CAACCTCCAGAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 1793860 Score = 141 bits (156), Expect = 6e-29 Identities = 161/214 (75%), Gaps = 4/214 (2%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 || ||||| |||| |||| ||||||||| |||||||||||||| ||| |||| |||| Sbjct 1793877 AGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCC 1793936 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 ||||| |||||||| ||||||||||| || ||||| ||| |||| | ||||||||||| Sbjct 1793937 TCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCC 1793996 Query 34886 TTTATTTTTTGTTTGACGGATGCT--ATCGATTCATTGGCCTCGACATCAACGGTTATGG 34943 | || || || || || || |||| || | ||||| || | ||| |||| Sbjct 1793997 TGGATCTTCGCCTTCAC--ATTCTCAATCGTATCGGATGGTTCGACCTCGAGGGTGATGG 1794054 Query 34944 TCTTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 ||||||| || || || || || || |||||||| Sbjct 1794055 TCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 1794088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325681594437437