Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq224 140 6e-28 seq890 91.5 3e-13 >seq224 Length=3387546 Score = 140 bits (154), Expect = 6e-28 Identities = 167/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || | || ||||| ||||| ||||| || ||||| || || Sbjct 1793634 CCACCACGCAGACGGAGCACCAGATGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGAC 1793693 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 || | | || ||||| || || |||||||| ||||| || | || |||||||| || Sbjct 1793694 AGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGG 1793753 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| || || |||||||| || || || ||||||||||| || || || Sbjct 1793754 ATTCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATCGTATCCGATGGCTCAACC 1793813 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||| ||| || ||||| || |||| || || || || |||||||| Sbjct 1793814 TCCAGAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 1793860 Score = 131 bits (144), Expect = 3e-25 Identities = 172/237 (73%), Gaps = 1/237 (0%) Strand=Plus/Plus Query 82582 TACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAG 82641 |||| || | || ||| ||||| | || || || || || ||||| || ||||| || | Sbjct 1793860 TACCACCACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCG 1793919 Query 82642 ATAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAG 82701 | || | | || || || || || |||||||| ||||| || | || |||||||| | Sbjct 1793920 ACAGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCG 1793979 Query 82702 GTATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTA 82761 | ||||| ||||| || || ||||| || || ||||| ||||||||||| ||||| | Sbjct 1793980 GGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCGGATGGTTCGA 1794039 Query 82762 CTTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATTATTATAT 82818 | || | || || ||||| || |||| || || || || ||||||| |||| ||| Sbjct 1794040 CCTCGAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCA-TATTTTAT 1794095 >seq890 Length=3078589 Score = 91.5 bits (100), Expect = 3e-13 Identities = 198/294 (67%), Gaps = 2/294 (1%) Strand=Plus/Minus Query 198312 CTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCATCGCAAATACAGATGATAAGA 198371 || || | ||| |||| |||||| ||| ||||| | | || | |||||| | | Sbjct 487929 CTGGAGACGGCCAAAACGCATGACGATCTGTGGAACTCGGCCCAGCTGCAGATGGTGAAG 487870 Query 198372 GAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATACTTGAATGGACA 198431 || || || ||||| | || | | ||||||||||| |||||||| || || ||||| Sbjct 487869 GAGGGCAAGATGCACGGCTTCCTGCGCATGTACTGGGCCAAAAAGATCCTGGAGTGGACG 487810 Query 198432 AGAACACCGGAAGACGC-TTTGAGTTATAGTATCTATCTAAACAATAAGTACGAACTAGA 198490 | ||| || ||||| || ||||| | |||||||| ||| || ||| || || Sbjct 487809 AAAACGCCCGAAGAAGCGCTTGAGACGGCG-ATCTATCTGAACGATCGCTACAGTCTGGA 487751 Query 198491 CGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGATTACATGATCG 198550 || ||||| ||||| ||||| ||||| |||||||| || || | || |||| Sbjct 487750 TGGGCGCGATCCGAACGGGTACGTCGGTTGCATGTGGTCGATCGCGGGCATCCACGATCA 487691 Query 198551 AGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTATGAGGG 198604 | ||||| || | || ||||| || || | || ||||| ||||| || Sbjct 487690 GGGCTGGAAGGAGCGCGAAATCTTTGGCAAAATTCGGTACATGAACTATGACGG 487637 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981791687616997