Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_024625.1 Length=151109 Score E Sequences producing significant alignments: (Bits) Value seq2381 441 7e-119 seq113 140 3e-28 seq224 138 1e-27 seq2001 107 2e-18 >seq2381 Length=1337761 Score = 441 bits (488), Expect = 7e-119 Identities = 967/1437 (67%), Gaps = 20/1437 (1%) Strand=Plus/Plus Query 148251 AGATACTGATTCACCACCTGAAACTCGCCGGCGAGCACGCGCCGCAGATACACGTTGCTC 148310 |||| || ||||||||||| |||||||| | |||||||||| || ||||| | Sbjct 918832 AGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGAC 918891 Query 148311 GTAAACGGTTCAAACGACTCGTTGTTGCCCAAAATCTGCGCGGTCGTTGCCGTGGGCATG 148370 || |||| || ||||| || |||||||| | ||| || || || | ||||| ||||| Sbjct 918892 GTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATC 918951 Query 148371 TACGCTACCAGCAGCGAGTTGCGCAAACCGCGATTTTTTATTTTGCGCTTCAGAGCCGCC 148430 || | ||||||||| ||||| | |||| | || || || ||||| | ||| Sbjct 918952 GGGGCCAACAGCAGCGAATTGCGAATACCGTGTTTGGCGATCTTTTCCTTCAACTCGGCC 919011 Query 148431 CAGTCCCAGAGCGGCGACGGTGTCACGTTCCACATGTCGTACTGCAGAATGCCGCGGCTA 148490 |||| ||| || || |||| | ||||||||| |||||||||| ||||| ||| Sbjct 919012 CAGTTCCACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGATGCCCTTGCTC 919071 Query 148491 GCGGGGCTGCCCTCGTACGAGCTGTACGGTCCGTGCGCCGCCGCCAGTTCGCAGCTCGCC 148550 | || ||||||||||||| |||||| || | || |||| || |||||||| Sbjct 919072 ACCGGACTGCCCTCGTACGTCTCGTACGGACCATCTCGAGCGGCCAACTCACAGCTCGCT 919131 Query 148551 TCGAGCGCGCCGTAGTAAATCGTCTCGGCAATTTGCCTGTTGAGCAGCGCCGCCGACTCG 148610 || |||||||||||||| || || ||| |||||| || ||| ||| ||| Sbjct 919132 TCCAGCGCGCCGTAGTAGATAGTTTCGAATATTTGCTGATTTAGCTTTTGAGCCTCTTCG 919191 Query 148611 CTTTCGTACGGCATA-CGCAGCCGCACAAACGCGTCGGCAAGGCCCTGTACGCCCACGCC 148669 ||||||||||| ||| |||| | | | ||||| ||||| | ||| || ||||| | || Sbjct 919192 CTTTCGTACGG-ATAGCGCATCAGGATGAACGCATCGGCCATGCCTTGCACGCCGATCCC 919250 Query 148670 AATGGGCCGGTGTTTAATGTTGGAGAGGCGCGCGCTCTCG-AGCGGATAGTGGTTGCGGT 148728 || |||| ||| || |||||| | || ||| | | ||||||| ||| | Sbjct 919251 GATCGGCCTGTGGCGCATATTGGAGCGCTTAGC-CTCCGGCACGGGATAGTAATTGACAT 919309 Query 148729 CGATGATCTTGTCAAGATTGCGCACCACCACCTTTGTAATTCTGCGCAGCAATTCAAAAT 148788 | ||||| |||| ||||||||| ||| ||| | | | |||| | |||| | Sbjct 919310 CAATGATTTTGTTCAGATTGCGCGTCACTGTCTTAGCGACTTCCTTCAGCTTTGCAAAGT 919369 Query 148789 CGTAC---TTGTC---ATCTACGATGCATCGGTTCACGGCGATAGAGGCTAGATTGCACA 148842 | ||| ||||| | ||| | ||| ||||| |||||| ||||| |||||||| | Sbjct 919370 CATACGTTTTGTCTTGCTTTAC-AAACAT--GTTCAAGGCGATCGAGGCCAGATTGCATA 919426 Query 148843 CGGCCGTCTCATCCGGGGCGCTGTACTCTACGATCTCGGCGCACAGATTGCTGCATTTGA 148902 | || ||||||| | |||||| || ||||| | ||||| ||| ||||||| Sbjct 919427 CCGCTACCTCATCCTTCGACGAGTACTCCACAATCTCAGTGCACAAGTTGGAACATTTGA 919486 Query 148903 TCACGCCCACGTTCTTTTGATTGCTCTTGCTGTTGCACGCGTCCTTGTACAGCATGTACG 148962 | ||| | |||| || || || || | ||||| || ||||||||||||||||||| Sbjct 919487 TGGTGCCGATATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACG 919546 Query 148963 GTCCGCCAGTTTCCACCTGCGTTTCCACTAT--GAACCGATGCAGGTCCTGCGCGCGCAC 149020 | |||| |||||||| |||| ||| | ||| || | | ||| |||||||| ||| Sbjct 919547 GCACGCCGGTTTCCACTTGCGATTCGATTATCGCAAACCA--CAGATCCTGCGCCTTCAC 919604 Query 149021 TTGCTGCTCGTAGCGACCCTCCTGCTCGTATAAAGTATACAGCCGCTCGAACGCCTCGCC 149080 || || |||||||||| | |||||| || |||||| ||||||| | ||||| Sbjct 919605 CTGTCGCATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAACTCTTCGCC 919664 Query 149081 GTAGCAATCGTCGAGACCGGGGCACTTGTGCGGGCACATGAGCGACCACACGCCGTCCGC 149140 || || || ||||| || | |||||||||||| || ||||| ||| ||| Sbjct 919665 CCAGGTGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGGCTCCACATTTCGTTCGC 919724 Query 149141 GTACACGCGCTTCATAAACAGATCGGGCACCCAGAGCGCGTACATGAGGTCGCGCGCCTT 149200 | ||| |||| ||| ||||| || || | ||| || ||||| | | ||| || || Sbjct 919725 CTCCACACGCTGCATGAACAGGTCCGGTATCCACAGTGCGTAAAACATGTCCCGTGCGCG 919784 Query 149201 GCAGTCTTCGGCGCCCATGTTGCGGCGCAGGTTGAGCACGCTGAATATGTCCGCGTGCCA 149260 | || || ||| |||| ||| | ||| | |||||| || | ||||| Sbjct 919785 GACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATATATCGCCATGCCA 919844 Query 149261 CGGCTCAATGTACACCGCGAGCGCGCCCTTGCGCTTG---CCGCCCTGGTCGACGTGGCG 149317 |||||| | || | |||| || || |||||| |||||||| ||||||| || Sbjct 919845 CGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTACCGCCCTGATCGACGTACCG 919904 Query 149318 CACCATGTTGTTAAACACTCGAACCATAGGTTCAATGCCACTGGCAGTGCCGTTAGTAGA 149377 || | ||||| | || || | ||| || | | || | | | | ||||| ||| Sbjct 919905 TGCCGTATTGTTGTAGACGCGCAACATCGGCACCAGACCGTTTGAAATCCCGTTCGTACC 919964 Query 149378 GCTAATGCGACTGCCGCGCGCTCGCACTTTGTGCACGTTGACGCCGATGCCGCCGCCGTA 149437 | ||| | || ||| || | ||||||||| | |||||||| ||| | | Sbjct 919965 GGAGATGTACGTTCCCTTCGCGCGAATACAGTGCACGTTCAGTCCGATGCCACCGGCCGA 920024 Query 149438 CTTTGAGATGGCCGCGCAGTCGCCGAGCGTCGAGTAGATGCCCTCGATGCTGTCGCGCTT 149497 |||||| || || || | ||||| |||||||||||| ||||| || Sbjct 920025 CTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCTCAATGCTATCTTCGGA 920084 Query 149498 CATGGTCAGCAGAAAGCACGAGCACATTTGCGGAAAACGCGTGCCGGCCGCGAACATGGT 149557 |||||||| ||| ||||| || | | || || |||| | ||||| ||||| || Sbjct 920085 CATGGTCAACAGGAAGCAGGACGAAAGCTGGGGGCGCTGCGTAGCCGCCGCAAACATAGT 920144 Query 149558 GGGGCTGGCGTGTGTAAAATATTTCTGGCTCATCATCTCGTACGACTCGAGCACGCGGTC 149617 || |||||| ||||| || || | || || | ||| | ||||| | | || Sbjct 920145 TGGCGAGGCGTGGGTAAAGTAACGCTCGGACAGCAGATTGTAGGTCTCGATCGCTGCATC 920204 Query 149618 CATGTCATCGCCATGGATGCCTATGGCGACGCGCATCAGCATATGCTGCGGTCGCTC 149674 ||||| |||||||||||||| || || |||||||||||||| ||||| || ||||| Sbjct 920205 GATGTCCTCGCCATGGATGCCAATAGCAACGCGCATCAGCATGTGCTGGGGGCGCTC 920261 >seq113 Length=3238079 Score = 140 bits (154), Expect = 3e-28 Identities = 156/206 (76%), Gaps = 2/206 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| || || ||||| || ||||| ||| | ||| ||| | ||||| |||| Sbjct 1949103 ATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCGGAGAGAGTGCGACCA-TCCTCCAGCT 1949161 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || || |||||||| || || || |||||||||||||| ||||| Sbjct 1949162 GCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGGGGAATGCCTTCCTTGTCCTGGATCT 1949221 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 || ||| | | ||| | |||||| | ||||| || || | |||| ||| ||||||| Sbjct 1949222 TTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCGACCTCAAGTGTGATGGTCTTGCCGG 1949281 Query 133636 TCAGAGTTTTTACGAAAATCTGCATG 133661 | || ||||| ||||||||||||||| Sbjct 1949282 TGAGTGTTTTCACGAAAATCTGCATG 1949307 Score = 123 bits (136), Expect = 2e-23 Identities = 152/205 (74%), Gaps = 2/205 (1%) Strand=Plus/Minus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||| ||||| ||||| || ||||| ||| || |||| | | | ||||| |||| Sbjct 854910 ATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGACAGCGTGCGGCCA-TCCTCCAGCT 854852 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 ||||||| ||| | || || |||||||| || || ||||| || |||||||| ||||| Sbjct 854851 GCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCT 854792 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||| | ||| || | |||||| || || | ||| | ||| || || | Sbjct 854791 TCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTACCCG 854732 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 | || ||||| ||||| |||||||| Sbjct 854731 TGAGGGTTTTGACGAAGATCTGCAT 854707 >seq224 Length=3387546 Score = 138 bits (152), Expect = 1e-27 Identities = 155/205 (76%), Gaps = 2/205 (1%) Strand=Plus/Plus Query 133457 ATGTATGGTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCT 133515 ||| | ||||||||| ||||| || || || || || ||| | | | ||||| |||| Sbjct 1793885 ATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCA-TCCTCCAGCT 1793943 Query 133516 GCTTGCCCGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCT 133575 |||| || ||| | || || |||||||| || || ||||| || |||||||| ||||| Sbjct 1793944 GCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCT 1794003 Query 133576 TTTGCTTGAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGG 133635 | ||| | | ||||| ||| |||| || || || |||| ||||| ||| || |||| Sbjct 1794004 TCGCCTTCACATTCTCAATCGTATCGGATGGTTCGACCTCGAGGGTGATGGTCTTTCCGG 1794063 Query 133636 TCAGAGTTTTTACGAAAATCTGCAT 133660 |||||||||| |||||||||||||| Sbjct 1794064 TCAGAGTTTTCACGAAAATCTGCAT 1794088 Score = 125 bits (138), Expect = 7e-24 Identities = 148/198 (75%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 133464 GTGGACTCTTTCTGTATATTGTAATCGCCCATCGTG-GACGAGTCCTCGAGCTGCTTGCC 133522 ||||| || ||||| || || || || || ||| | | | || || |||||||| || Sbjct 1793664 GTGGATTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCA-TCTTCCAGCTGCTTTCC 1793722 Query 133523 CGCGTAAATGAGCCGCTGCTGGTCGGGAGGGATGCCTTCCTTGTCGGTGATCTTTTGCTT 133582 ||| | || || |||||||| || || ||||| || |||||||| ||||||| ||| Sbjct 1793723 AGCGAAGATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTTGCCTT 1793782 Query 133583 GAGCTGCTCAACCGTGTCGGTGGGCTCCACGTCGACGGTGACGGTTTTGCCGGTCAGAGT 133642 || | ||||| ||| || | ||||| || || | |||| ||| || ||||||||||| Sbjct 1793783 GACGTTCTCAATCGTATCCGATGGCTCAACCTCCAGAGTGATGGTCTTTCCGGTCAGAGT 1793842 Query 133643 TTTTACGAAAATCTGCAT 133660 ||| |||||||||||||| Sbjct 1793843 TTTCACGAAAATCTGCAT 1793860 >seq2001 Length=1904535 Score = 107 bits (118), Expect = 2e-18 Identities = 160/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 120639 CAGGCACGCAAAGTCCGTGTGCAGGCCCTCGTCGCGCGATATCAGCTCGTTGCTAAACGT 120698 |||||| |||||||| |||||| || ||||||||||| ||||||||||| || || Sbjct 1560341 CAGGCAGGCAAAGTCGCAGTGCAGCCCTTCGTCGCGCGAGATCAGCTCGTTCGAGAAGGT 1560282 Query 120699 CAGGCCGGGCATGATGCCTTTCGTCTTGATGTAGAATATGGCGGCAAAGCTGCCCGAAAA 120758 || || ||||| | ||| |||| | |||| || ||||| |||||||| || Sbjct 1560281 GAGTCCTGGCATCAGGCCACGTTTCTTCAGCCAGAAGATCGCGGCGAAGCTGCCGCTGAA 1560222 Query 120759 GAACACGCCCTCCACGATGGCAAAGGCGACCATGCGCTCGGCCAACGTCGCCGTCTTGCT 120818 ||| | ||||| || || || || || | |||||| | || | ||| ||||||| Sbjct 1560221 GAAGATACCCTCAACCGCAGCGAATGCCACGACCCGCTCGCCAAAGTTGGCCTTCTTGCT 1560162 Query 120819 GTCGATCCACTTCATGGCCCACTCGGCCTTTTTGCGCACGCACGGCA 120865 |||||| |||| ||||| || ||||| ||||||||||| Sbjct 1560161 CGAGATCCAGTTCAGCGCCCAGTCCGCCTTCCGCTTCACGCACGGCA 1560115 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 483403741288520