Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_025257.1 Length=102759 Score E Sequences producing significant alignments: (Bits) Value seq224 98.7 7e-16 seq113 96.9 2e-15 >seq224 Length=3387546 Score = 98.7 bits (108), Expect = 7e-16 Identities = 163/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Plus Query 33522 ACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGA 33581 |||||| | || ||| | |||| ||| || ||| ||| || || ||||| || || || Sbjct 1793861 ACCACCACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGA 1793920 Query 33582 GAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGG 33641 || ||||| | || |||| || ||||| || || |||| ||||||||||||| |||| Sbjct 1793921 CAGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGG 1793980 Query 33642 CACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCCA 33700 | || || ||||| || ||| ||| |||| || | || ||| || ||| | Sbjct 1793981 GATTCCCTCCTTGTCCTGGATCTTCGCCTTC-ACATTCTCAATCGTATCGGATGGTTCGA 1794039 Query 33701 CGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCATAGTT 33753 | || | ||||| || || || || | ||||| || || ||||||||| || Sbjct 1794040 CCTCGAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCATATTT 1794092 Score = 84.2 bits (92), Expect = 1e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 33523 CCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGGAG 33582 ||||| | || ||| | ||||| ||| |||||| || || || ||||| || || || Sbjct 1793634 CCACCACGCAGACGGAGCACCAGATGAAGAGTGGATTCCTTCTGGATGTTATAGTCCGAC 1793693 Query 33583 AGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCGGC 33642 || ||||| | || |||| || ||||| || || |||| ||||||||||||| |||| Sbjct 1793694 AGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGG 1793753 Query 33643 ACACCTTCTTTGTC 33656 | || || ||||| Sbjct 1793754 ATTCCCTCCTTGTC 1793767 >seq113 Length=3238079 Score = 96.9 bits (106), Expect = 2e-15 Identities = 161/230 (70%), Gaps = 2/230 (1%) Strand=Plus/Minus Query 33521 CACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTGTAATCGG 33580 ||||||| | || || | ||||| ||| || || ||| || || |||||||| |||| Sbjct 854935 CACCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGG 854876 Query 33581 AGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGATCTTGCG 33640 | || ||||| | || |||| || || ||||| || |||| ||||||||||||| ||| Sbjct 854875 ACAGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCG 854816 Query 33641 GCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCTTGATTCC 33699 | | || || ||||| || ||| ||| |||| || | || || | || Sbjct 854815 GGATTCCCTCCTTGTCCTGGATCTTCGCCTTC-ACATTCTCGATCGTATCCGAGGGCTCG 854757 Query 33700 ACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 || |||| || || || ||||| || | ||||| || ||||||||||| Sbjct 854756 ACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 854707 Score = 87.8 bits (96), Expect = 1e-12 Identities = 163/237 (69%), Gaps = 2/237 (1%) Strand=Plus/Plus Query 33514 AAATCGTCACCACCTCTCAAACGTAACACCAAATGTAGAGTGCTCTCTTTTTGTATGTTG 33573 |||| | |||||| | | || | ||||| ||| || || || || || |||||| Sbjct 1949071 AAATACTTACCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTG 1949130 Query 33574 TAATCGGAGAGTGTGCGTTCGTCGTCCAATTGTTTTCCGGCAAAAATCAAACGCTGCTGA 33633 || |||||||| ||||| | || |||| || || ||||| || |||| |||||||||| Sbjct 1949131 TAGTCGGAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGA 1949190 Query 33634 TCTTGCGGCACACCTTCTTTGTCGGCAATTTTCTGTTTCAACATAGTC-ACGGTGTCGCT 33692 ||| | || | ||||| ||||| || || || | |||| || | ||||| Sbjct 1949191 TCTGGGGGAATGCCTTCCTTGTCCTGGATCTT-TGCCTTCACATTCTCGATCGTGTCCGA 1949249 Query 33693 TGATTCCACGTCAACCGTGATCGTTTTACCTGTTAACGTTTTTACAAAGATCTGCAT 33749 | || || |||| ||||| || || || || | ||||| || || |||||||| Sbjct 1949250 AGGCTCGACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 1949306 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 328692690836160