Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq2381 123 4e-22 seq2001 96.9 5e-14 seq1 89.7 7e-12 >seq2381 Length=1337761 Score = 123 bits (136), Expect = 4e-22 Identities = 175/245 (71%), Gaps = 1/245 (0%) Strand=Plus/Minus Query 259942 CGGC-ACGCCGCGCCCGCAGAATTCGTCGTGCTTTCTGTTGGACATGAAGGCCGATTCGA 260000 |||| |||| |||||| ||| |||||| ||||| |||||| |||| | ||| | Sbjct 920131 CGGCTACGCAGCGCCCCCAGCTTTCGTCCTGCTTCCTGTTGACCATGTCCGAAGATAGCA 920072 Query 260001 TCGAGGGCATCTATGACACGCTCAAGCAGTGCGCGCTCATCTCCAAGGCGGCCGGCGGCA 260060 | ||||||||||| |||||||| |||||||| || || || || ||| ||||||| |||| Sbjct 920071 TTGAGGGCATCTACGACACGCTGAAGCAGTGTGCCCTAATTTCAAAGTCGGCCGGTGGCA 920012 Query 260061 TCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGCGCCTACGTGGCGGGCACCAACGGCC 260120 |||| | || ||| | ||||| ||| | ||| | | || || ||||| Sbjct 920011 TCGGACTGAACGTGCACTGTATTCGCGCGAAGGGAACGTACATCTCCGGTACGAACGGGA 919952 Query 260121 AGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTTAACGACACGGCGCGCTACGTCGACC 260180 || ||||| || ||||| ||| | ||||| | ||| | ||||| || |||||||| | Sbjct 919951 TTTCAAACGGTCTGGTGCCGATGTTGCGCGTCTACAACAATACGGCACGGTACGTCGATC 919892 Query 260181 AGTGC 260185 || || Sbjct 919891 AGGGC 919887 >seq2001 Length=1904535 Score = 96.9 bits (106), Expect = 5e-14 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Plus Query 1455855 TGGGTGTCGCTGAGCGACGA-CGAGCGCCATTTCATCAAGCACGTCCTCGCCTTTTTTCG 1455913 |||| |||||||| ||| ||| ||||| |||||| ||||| || ||||| ||| | Sbjct 1559756 TGGGAGTCGCTGAAAC-CGAGCGAACGCCACTTCATCTCCCACGTGCTGGCCTTCTTT-G 1559813 Query 1455914 CCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCCGGCCGCTTTATGAAAGAGGTCCAAT 1455973 | || ||| || |||||| |||||| |||| | ||||| | | ||||| || Sbjct 1559814 CTGCGTCCGACGGTATCGTGAACGAGAATCTGGTGGAACGCTTCAGCCAGGAGGTGCAGG 1559873 Query 1455974 TGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATCGCCATCGAAAACATCCACTCTGAAA 1456033 | | ||||| || | || ||||| |||||||| || || ||||| | ||| || | Sbjct 1559874 TTACGGAGGCGCGCTGCTTCTACGGCTTCCAGATTGCGATGGAAAATGTGCACAGCGAGA 1559933 Query 1456034 CCTACTCGCTCCTGATCGACACCTACGTC 1456062 |||||||| ||||||||||| ||| || Sbjct 1559934 TGTACTCGCTGCTGATCGACACGTACATC 1559962 Score = 86.0 bits (94), Expect = 9e-11 Identities = 156/222 (70%), Gaps = 11/222 (5%) Strand=Plus/Plus Query 1456452 TGCACTGTGACTTTGCCTGTCTGCTCTACACGATGCTCGTCAACAAGCCGTCGACCGA-- 1456509 ||||||| ||||||||||| ||| | | || | || || | |||||||||| || Sbjct 1560319 TGCACTGCGACTTTGCCTGCCTGATGTTCAAGTATCTGGTGCAGAAGCCGTCGAAGGAGC 1560378 Query 1456510 -CGTGCCCAAGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGT 1456568 |||| | | |||||||| ||| || ||| ||||||| | ||||| | | || Sbjct 1560379 GCGTG---ACGGAGATCATCCGCGATGCGGTCCTGATCGAGCAGGAGTTCCTGACGAAGG 1560435 Query 1456569 CGCTGCCGGTGGCGCTCATCGGCATGAAC-GCCACCGCTCATGTGCCAGTACATTGAATT 1456627 | |||||||||| | | ||||||||| || | || |||| |||||||||| | | Sbjct 1560436 CACTGCCGGTGGATATGCTGGGCATGAACTGCGA--TCTGATGTCGCAGTACATTG-AGT 1560492 Query 1456628 TTGTCGCCGACCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAG 1456669 |||| ||||| || |||| | ||| |||||| |||||| Sbjct 1560493 TTGTGGCCGATCGTTTGCTGCTCGAGCTGGGCTGC-GAGAAG 1560533 >seq1 Length=6256182 Score = 89.7 bits (98), Expect = 7e-12 Identities = 162/230 (70%), Gaps = 14/230 (6%) Strand=Plus/Minus Query 1600520 AAGGGCGTGCCGTCGCCCACATAGCCCTCGCGGCAGGCCACCTTGCCCAGGAGGGCCTCC 1600579 || |||||| ||||||| | | ||||| | || ||| ||||||| ||| | ||| Sbjct 3619452 AACGGCGTGGCGTCGCCGATTTCGCCCTTGTTCGAGCCCAGCTTGCCCTGGATGCACTCG 3619393 Query 1600580 ATCATCTTGCCCATGGTCATGCGCGACGGGATGGCGTGCGGGTTGATCACAATGTCGGGC 1600639 |||| | || |||||||| || |||||||||||||||||||| || | ||||| ||| Sbjct 3619392 ATCAAATGCCCAATGGTCATACGGGACGGGATGGCGTGCGGGTTAATGATGATGTCCGGC 3619333 Query 1600640 GTGGCACCGCCGCGAGGCGACCAGGGCATGTCCTCGGTGGAGCGCACGCTG-----CCCA 1600694 || || ||| | | || | ||||||||||| ||| | | ||| | || Sbjct 3619332 GTAATGCCCTCGC-ACGTGA--ACGGCATGTCCTC-CTGGCG---ATACTGTATACCGCA 3619280 Query 1600695 CGGTGCCCTTTTGGCCGTGGCGCGACGACAGTTTGTCGCCCACCT-CGGG 1600743 | || || || || ||||||||||||| | |||||||| | || |||| Sbjct 3619279 C-GTACCTTTCTGTCCGTGGCGCGACGCAAACTTGTCGCCAATCTGCGGG 3619231 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177538916461326