Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq890 123 2e-23 seq113 113 4e-20 seq224 109 5e-19 >seq890 Length=3078589 Score = 123 bits (136), Expect = 2e-23 Identities = 210/299 (70%), Gaps = 4/299 (1%) Strand=Plus/Minus Query 44103 CTAGAGACGGCCTCCACCCATGATCCTTTGTGGAACGCTGCCCAAACACAACTGTTGCGA 44162 || ||||||||| || ||||| | |||||||| | ||||| || || || Sbjct 487929 CTGGAGACGGCCAAAACGCATGACGATCTGTGGAACTCGGCCCAGCTGCAGATGGTGAAG 487870 Query 44163 GAAGGTAAAATGCACCAATACATGCGTATGTATTGGTGCAAGAAGATATTGGAGTGGTCG 44222 || || || |||||| | | |||| ||||| ||| ||| ||||| |||||||| || Sbjct 487869 GAGGGCAAGATGCACGGCTTCCTGCGCATGTACTGGGCCAAAAAGATCCTGGAGTGGACG 487810 Query 44223 GAAGATGCGCAAACC-GCGCTCGTTCATGCCATCTATCTGAACGACAAGTACAGTTTGGA 44281 || | || | || ||||| | || |||||||||||||| |||||| |||| Sbjct 487809 AAA-ACGCCCGAAGAAGCGCTTGAGACGGCGATCTATCTGAACGATCGCTACAGTCTGGA 487751 Query 44282 CGGTCGCGACCCCAACGGGTACGTAGGATGTATGTGGTCCATTTGCGGTGTCCACGA-CA 44340 || ||||| || ||||||||||| || || |||||||| || || ||||||| || Sbjct 487750 TGGGCGCGATCCGAACGGGTACGTCGGTTGCATGTGGTCGATCGCGGGCATCCACGATCA 487691 Query 44341 GGGCGTGGCGAGAGCTACCCATCTACGGCAAAGTGCGCTACATGAACTACAACGGTTGC 44399 |||| ||| |||| |||| |||||| | || ||||||||||| |||| ||| Sbjct 487690 GGGC-TGGAAGGAGCGCGAAATCTTTGGCAAAATTCGGTACATGAACTATGACGGATGC 487633 >seq113 Length=3238079 Score = 113 bits (124), Expect = 4e-20 Identities = 163/230 (71%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 35507 TTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCG 35566 || |||||||| | | || ||||| ||| | || ||||| ||||||||||| ||| Sbjct 1949077 TTACCACCACGGAGTCGCAGCACCAGATGAAGGGTCGATTCCTTCTGAATGTTGTAGTCG 1949136 Query 35567 GCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAA 35626 | | || || | || ||||||||||| || || || |||| |||||||| || | Sbjct 1949137 GAGAGAGTGCGACCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGG 1949196 Query 35627 GGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCC 35686 |||| || ||||||||| ||||||| ||||| | | | | |||||| | || Sbjct 1949197 GGAATGCCTTCCTTGTCCTGGATCTTTGCCTTCACATTCTCGATCGTGTCCGAAGGCTCG 1949256 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | ||||| || || || || | |||||||| || |||||||| Sbjct 1949257 ACCTCAAGTGTGATGGTCTTGCCGGTGAGTGTTTTCACGAAAATCTGCAT 1949306 Score = 98.7 bits (108), Expect = 9e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 35510 CCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGGCC 35569 ||||| || | | || ||||| ||| | || |||||| || |||||||| |||| | Sbjct 854933 CCACCGCGCAGGCGCAGCACCAGATGAAGGGTCGACTCCTTCTGGATGTTGTAGTCGGAC 854874 Query 35570 AAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAGGA 35629 | || || | || ||||||||||| || || || |||| |||||||| || | || Sbjct 854873 AGCGTGCGGCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGATCTGGCGGG 854814 Query 35630 ACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGATTCCACC 35689 | | |||||||||| |||||| ||||| | | | | ||| || | || ||| Sbjct 854813 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 854754 Query 35690 TCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 || | || || || |||||||| | ||||| || || |||||||| Sbjct 854753 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 854707 >seq224 Length=3387546 Score = 109 bits (120), Expect = 5e-19 Identities = 167/237 (70%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 35503 TTTATTTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTA 35562 || |||||||||||| | | | ||||| ||| | || ||||| || ||||| || Sbjct 1793627 TTAATTTCCACCACGCAGACGGAGCACCAGATGAAGAGTGGATTCCTTCTGGATGTTATA 1793686 Query 35563 ATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTC 35622 || | || ||| || | || ||||||||||| || || || |||| |||||||| || Sbjct 1793687 GTCCGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATC 1793746 Query 35623 CGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTGCCACCGTGTCGCTCGA 35682 | || | | |||||||||| ||||||| ||| | | | | ||| || ||| Sbjct 1793747 TGGCGGGATTCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATCGTATC---CGA 1793803 Query 35683 T---TCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 | || ||||||| ||||| || || || |||| ||||||||| || |||||||| Sbjct 1793804 TGGCTCAACCTCCAGAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCAT 1793860 Score = 107 bits (118), Expect = 2e-18 Identities = 139/192 (72%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || ||||| || || | || ||| || | || ||||||||||| || || || Sbjct 1793897 CTCCTTCTGGATGTTATAGTCCGACAGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAA 1793956 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| |||||||| || | || | | |||||||||| |||||| ||||| | | Sbjct 1793957 GATCAGACGCTGCTGATCTGGCGGGATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 1794016 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | ||| ||| | ||| ||||| | ||||| || || || |||| ||||||||| Sbjct 1794017 CTCAATCGTATCGGATGGTTCGACCTCGAGGGTGATGGTCTTTCCGGTCAGAGTTTTCAC 1794076 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 1794077 GAAAATCTGCAT 1794088 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450777692620840