Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_027923.1 Length=132831 Score E Sequences producing significant alignments: (Bits) Value seq2381 214 2e-50 seq224 98.7 8e-16 >seq2381 Length=1337761 Score = 214 bits (236), Expect = 2e-50 Identities = 1184/1865 (63%), Gaps = 57/1865 (3%) Strand=Plus/Plus Query 130406 TTTTCGACGGTGAATTGAATGGCATTGGTGGCCGGCTTGGTGCGCAAATAATACATGCCT 130465 || || || || || || || ||||| ||| |||||||| |||| ||| |||||||| Sbjct 918493 TTGTCCACCGTAAACTGGATCGCATTTACGGCTGGCTTGGTACGCAGATAGTACATGCCA 918552 Query 130466 GTTTTGAGTCCAATTTTGTGTCCATAATTGTGGATGCTGCACATTGTTTGG--TAATTGG 130523 ||||| | || || || || || ||||| || | ||| || || | Sbjct 918553 GTTTTCAAACCCATCTTCCAGCCGTAGAAATGGATCGACGTCA--GCTTGCCATAGTTTG 918610 Query 130524 GTTGCGCCACGAATATGTTGAGCGATTGCGATTGATCAATAAAAGCGCCCCTGTCTGCAG 130583 | | ||| ||| ||||||| ||||||||| ||||| ||||| || || | ||||| | Sbjct 918611 GCTCCGCGACGTGAATGTTGAACGATTGCGACTGATCGATAAACGCACCACGATCTGCGG 918670 Query 130584 CCATGTCGA-GCATGGTTTTATTTTTCATCTCCCAAGCGGTCTTGTATAGATCCCTAATG 130642 |||| | || ||| | ||| | |||||||| | || ||||| || || | ||| Sbjct 918671 CCATTTTGATGCACGTTTTCACCGAG-ATCTCCCATACCGTTTTGTACAGGTCGCGAATT 918729 Query 130643 TGTTTGGGTATGCGCGCAATCGATTGAA-CGCTACCGTTGTTGGCTATAATTTCGTTGCG 130701 | | ||||| ||||||| ||| | || | || ||||||| | ||||||||| Sbjct 918730 TCCTGCGGTATAGCCGCAATCTTTTGGATCGAT-CCATTGTTGGACAGAATTTCGTTCTT 918788 Query 130702 CATACTTTTATCGTACA-ATCCAAGCTGTACAAGATCTTTTACCAAATGATTATTAATGA 130760 ||| ||| ||| | ||| | || ||| ||| | | | ||||| || | | Sbjct 918789 CATGTCGAGATCCCACAGACCCATGTTGGTCAA-ATCCTGCAGAAGATGATGGTTCACCA 918847 Query 130761 TTTGAAAATCACCAGCCAGGACGCGTCTAACGTAAATGTTGCTCGTGAACGGTTCAAAGG 130820 || || || || | ||| ||||| ||| ||||| ||| |||| |||| || || | Sbjct 918848 CCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAACGTTCGACGTGTACGGCTCGAACG 918907 Query 130821 ATTCGTTGTTGCCGAATATTTGTGCTGTAGTTGCGGTGGGCATGTATGCCACTAATAGAG 130880 |||| |||||||||| |||||||| || | || || ||||| |||| | || | Sbjct 918908 ATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCGTCGGCATCGGGGCCAACAGCAGCG 918967 Query 130881 AATTACGAAGACCGTGCGTCGTGATTTTTCGCTTCAATTCATCCCAATCCCATAGAGAGG 130940 |||| |||| |||||| | | ||| ||| |||||| || |||| | ||| ||| | Sbjct 918968 AATTGCGAATACCGTGTTTGGCGATCTTTTCCTTCAACTCGGCCCAGTTCCACAGATCCG 919027 Query 130941 TAGGTTTGACATTGTTCCACATATCAAATTGTAGTATGCCTTTACTGGCGGGACTGGATT 131000 | |||| | ||||||||||| || | || | ||||| || || | |||||| | Sbjct 919028 TCGGTT---CCTTGTTCCACATCTCGTACTGCAAGATGCCCTTGCTCACCGGACTGCCCT 919084 Query 131001 CGAACGATTCGTAGATTCCTTCGACACGAGCCAGGTCGTTGCTAGCTTCCAAAGCTCCGT 131060 || ||| ||||| || || | |||| || ||| ||||||| || |||| Sbjct 919085 CGTACGTCTCGTACGGACCATCTCGAGCGGCCAACTCACAGCTCGCTTCCAGCGCGCCGT 919144 Query 131061 AATAAATGGTTTCGGCAATTTGTTTATTTAATTGTTTCGCTTGGTTGCTCTCGTAAGGAA 131120 | || || |||||| ||||| | ||||| | || || | | ||| ||||| ||| Sbjct 919145 AGTAGATAGTTTCGAATATTTGCTGATTTAGCTTTTGAGCCTCTTCGCTTTCGTACGGAT 919204 Query 131121 ATTTCATTAAAATAAAAGCGTCTGCGAGACCCTGTATCCCAACGCCCACCGGTCTATGTT 131180 | ||| | || || || || || | || || | || | || | ||| || || Sbjct 919205 AGCGCATCAGGATGAACGCATCGGCCATGCCTTGCACGCCGATCCCGATCGGCCTGTGGC 919264 Query 131181 TTAAATTACATTTACGC-GAACATTCGG--TGGGATAAAGGTTAATGTCAATTATTTTGT 131237 | ||| | ||| | | | ||| |||||| || | ||||| ||||||| Sbjct 919265 GCATATTGGA---GCGCTTAGCCTCCGGCACGGGATAGTAATTGACATCAATGATTTTGT 919321 Query 131238 TTAAATTGCGCACTACAATTTGTGTGACGCTTTTCAATTTGTCGAAATCAAACGTGCCAG 131297 | | ||||||| || | | | ||| |||| || | || ||| |||| Sbjct 919322 TCAGATTGCGCGTCACTGTCTTAGCGACTTCCTTCAGCTTTGCAAAGTCATACGT---TT 919378 Query 131298 TTTCGAGGTTTACAAATTGATTTACACATATTGACGCCAGATTACAAACTGCCGTTTCGT 131357 | || | |||||||| || | || || |||||||| || || || || | Sbjct 919379 TGTCTTGCTTTACAAACATGTTCAAGGCGATCGAGGCCAGATTGCATACCGCTACCTCAT 919438 Query 131358 CATAATCG--CAATACTGAACAATTTCGGCGCACAAATTACTGCTCTTTATGGTGCCCAA 131415 | | ||| | |||| ||||| || | |||||| || | || |||||||| | Sbjct 919439 CCT--TCGACGAGTACTCCACAATCTCAGTGCACAAGTTGGAACATTTGATGGTGCCGAT 919496 Query 131416 ATTTTGTTGATTGCTTTTAGCATTCACATGGTCCTTGTACATCATGTAGGGCGTGCCCGT 131475 ||| || || || |||||| ||| | |||||||||| |||||| ||| ||| || Sbjct 919497 ATTCTGCTGGTTACTTTTACGATTGCAAGCATCCTTGTACAGCATGTACGGCACGCCGGT 919556 Query 131476 TTCGACTTGAGTTTCAATAATGTATCGAA----AGAGTTTTCGAGCAGACAATTGATATT 131531 ||| ||||| | ||| || ||||| | | || | | || || || Sbjct 919557 TTCCACTTGCGATTCGAT----TATCGCAAACCACAGATCCTGCGCCTTCACCTGTCGCA 919612 Query 131532 TGTATTGGCCGCGTTTTTCGTAATTTTCGTACAACGTTTCAAAGTTTTGGCCAAACGAAC 131591 | | | || ||| ||||| ||||| | | || || | || ||| | | Sbjct 919613 TAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTCTCGAACTCTTCGCC---CCAGG 919669 Query 131592 TGTCC---AAATTGGGACATTCGCTGGGACACATTAGCGACCACACGCCGTTCTGTTCAA 131648 ||||| | |||||| ||| || ||||| || ||||| ||||| || | Sbjct 919670 TGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGGCTCCACATTTCGTTCGCCTCCA 919729 Query 131649 CTCGCTTCATAAACAAATCCGGCACCCATAACGCGTACAACAGATCTCTAGCTTTTTTCT 131708 | |||| ||| |||| ||||| | ||| | ||||| |||| || | || || Sbjct 919730 CACGCTGCATGAACAGGTCCGGTATCCACAGTGCGTAAAACATGTCCCGTGCGCGGACCT 919789 Query 131709 CTTCTGTACCCATAAtttttttCAAATTTAAAAAGTCCAAAATGTCCGCATGCCAGGGTT 131768 | || | || | |||| |||| || | ||| || || || || ||||||| || | Sbjct 919790 CCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAACTCGAATATATCGCCATGCCACGGCT 919849 Query 131769 CCAAATACACTGCCATTGCGCCTTTGCGC---TTACCGCCTTGATTAACATGACGAACCA 131825 | | ||| | || | ||| || ||| |||||||| |||| || | || || Sbjct 919850 CGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTACCGCCCTGATCGACGTACCGTGCCG 919909 Query 131826 TGTTGTTGTATACGCGCAACATGGGCTCCAAACCGTTGGCGTTTCCATTGGTGCTCTTAA 131885 | |||||||| ||||||||||| ||| ||| |||||| | | || || || | | Sbjct 919910 TATTGTTGTAGACGCGCAACATCGGCACCAGACCGTTTGAAATCCCGTTCGTACCGGAGA 919969 Query 131886 TGTAGCTGCCATTGGCTCTGATTTTGTGAACGTTGAGTCCAATACCTCCGCCGTATTTAG 131945 |||| | || || || | || ||| ||||| ||||| || || ||| | | || | Sbjct 919970 TGTACGTTCCCTTCGCGCGAATACAGTGCACGTTCAGTCCGATGCCACCGGCCGACTTTG 920029 Query 131946 AGATTAGTGCGCATTTGGTTAGAGTGTTATAGATACCTTCCACGCTGTCCGCGG-CAATG 132004 | ||||| || || | | || |||| ||||| || || | ||| || ||| || | Sbjct 920030 AAATTAGGGCACACTGCTTCAGCGTGTCGTAGATGCCCTCAATGCTATCTTCGGACATGG 920089 Query 132005 TCGACTAAAAAGCAAGAGGACAACTGTTGGTGAAATGTGCCGGCTGAAAACAATGTGGGG 132064 || || | ||||| || || | ||| || | || | || | ||||| || || Sbjct 920090 TCAAC-AGGAAGCAGGACGAAAGCTGGGGGCGCTGCGTAGCCGCCGCAAACATAGTTGGC 920148 Query 132065 CTGGCGTGTGTAAAAAGTTTTTTGGCCATGCACCGA---TACGATTGTATAGCGGACTCG 132121 |||||| ||||| | || || ||| || || | | || || | ||| Sbjct 920149 GAGGCGTGGGTAAAGTAACGCTCGGACA-GCA--GATTGTAGGTCTCGATCGCTGCATCG 920205 Query 132122 ATATCGCCCAGATGTATGGTCAAT-GCGACCCGCATGTACATGTGTTGAATGCGCTCGGC 132180 || || | ||| || | |||| || || ||||| |||||| || ||||||| | Sbjct 920206 ATGTCCTCGCCATGGAT-GCCAATAGCAACGCGCATCAGCATGTGCTGGGGGCGCTCGAC 920264 Query 132181 CGTTTTGCCGTCGATTTTGATCAA--ATAACCGTTTTCCAAAGTTTTGAAACCAAAATAT 132238 |||| || | ||| || | ||| || | || |||||| ||||| || || ||||| Sbjct 920265 GATTTTTCCCTTGATCTTCAGCAAGTATGATCG--TTCCAAGGTTTTAAAGCCGAAATAG 920322 Query 132239 TTGTA 132243 ||||| Sbjct 920323 TTGTA 920327 >seq224 Length=3387546 Score = 98.7 bits (108), Expect = 8e-16 Identities = 167/238 (70%), Gaps = 3/238 (1%) Strand=Plus/Plus Query 27013 AATTA-TTGCCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTG 27071 ||||| || || || |||| || | |||| ||| | || || || || || || || Sbjct 1793625 AATTAATTTCCACCACGCAGACGGAGCACCAGATGAAGAGTGGATTCCTTCTGGATGTTA 1793684 Query 27072 TAGTCGCTCATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGA 27131 ||||| || | |||| | ||||| ||||| || || ||| | || |||||||| ||| Sbjct 1793685 TAGTCCGACAGGGTGCGGCCATCTTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGA 1793744 Query 27132 TCCGGCGGCACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTG-T 27190 || ||||| | ||||| || || |||||| || | | | || | || || | | Sbjct 1793745 TCTGGCGGGATTCCCTCCTTGTCCTGGATCTTTGCCTTGACGTTCTCAATCGTATCCGAT 1793804 Query 27191 GGCTTCAACTTCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 |||| |||| || ||||| || | || || |||||||||||||| || || |||||| Sbjct 1793805 GGCT-CAACCTCCAGAGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCATA 1793861 Score = 82.4 bits (90), Expect = 6e-11 Identities = 155/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 27021 CCTCCGCGCAACCGCAATACCAAATGTAACGTAGAGTCTTTTTGAATATTGTAGTCGCTC 27080 || || |||| || | |||| ||| | || || || || || || || ||||| | Sbjct 1793862 CCACCACGCAGACGGAGAACCAGATGAAGGGTGGACTCCTTCTGGATGTTATAGTCCGAC 1793921 Query 27081 ATGTTGCGCTCGTCTTCGAGCTGTTTACCGGCGTAAATGAGACGCTGTTGATCCGGCGGC 27140 | | |||| | || || ||||| || || ||| | || |||||||| ||||| ||||| Sbjct 1793922 AGGGTGCGGCCATCCTCCAGCTGCTTTCCAGCGAAGATCAGACGCTGCTGATCTGGCGGG 1793981 Query 27141 ACACCCTCTTTATCGGCGATCTTGTTTTTCAGGGTTTCTACAGTGTCTGTGGCTTCAACT 27200 | ||||| || || |||||| |||| | || | || || | | ||| || Sbjct 1793982 ATTCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCAATCGTATCGGATGGTTCGACC 1794041 Query 27201 TCTAGAGTTATAGATTTGCCCGTCAGAGTTTTCACAAAGATTTGCATA 27248 || || || || | || || |||||||||||||| || || |||||| Sbjct 1794042 TCGAGGGTGATGGTCTTTCCGGTCAGAGTTTTCACGAAAATCTGCATA 1794089 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 424919779999176