Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_027925.1 Length=496396 Score E Sequences producing significant alignments: (Bits) Value seq2381 100 9e-16 seq2001 98.7 3e-15 >seq2381 Length=1337761 Score = 100 bits (110), Expect = 9e-16 Identities = 273/410 (67%), Gaps = 6/410 (1%) Strand=Plus/Minus Query 254981 CCAATGATCCGTGTGTTCAACAACGTGGCTCGCTACGTCGATCAAGGGGGCGGCAAACGC 255040 || ||| | || || | |||||| ||| || ||||||||||| || || ||| || Sbjct 919934 CCGATGTTGCGCGTCTACAACAATACGGCACGGTACGTCGATCAGGGCGGTAACAAGCGG 919875 Query 255041 CCAGGAGCGTTCACCATCTACCTGGAGCCGTGGCACGCCGACATTGAACGGTTTTTACTG 255100 || ||||| ||| ||||||| || ||||||||||| | ||| || |||| | Sbjct 919874 CCTGGAGCATTCGCCATCTATCTCGAGCCGTGGCATGGCGATATATTCGAGTTTCTCGAT 919815 Query 255101 CTGTCCGACAAGACCGGCACCGAGGAGCTGATCGCCCGCGACATCTACACCGCTGTCTGG 255160 ||| | || ||||||| |||||| | ||| || ||||| | ||| | ||| Sbjct 919814 CTGAAGAAAAACACCGGCAAGGAGGAGGTCCGCGCACGGGACATGTTTTACGCACTGTGG 919755 Query 255161 -TGCTGCGATCTGTTTATGCGACGCGTGGA-ACGAGACGAGACCTGGAGCCTCATGTGTC 255218 | | | || ||||| |||| || ||||| ||| |||| | |||||||| ||||| | Sbjct 919754 ATACCG-GACCTGTTCATGCAGCGTGTGGAGGCGA-ACGAAATGTGGAGCCTGATGTGCC 919697 Query 255219 CCAACTTATCGCCCGGTCTAGTCGACTCTTGGGGTGACGAGTTTGAAAAACTGTATCTGG 255278 | || | ||||| ||| ||| | ||||| || ||||| || || ||||| || Sbjct 919696 CGCACGATTGTCCCGGGCTATCGGACACCTGGGGCGAAGAGTTCGAGAAGCTGTACACGG 919637 Query 255279 AGTACGAGCGTGCCGGCCGGTTCGTACGCCAAGTGCCCGCGAAGAAGATCTGGAACACGA 255338 ||||||| | || || || | || || ||| ||| || | | ||| ||| Sbjct 919636 GGTACGAGAAAGAGGGTCGCTTTATGCGACAGGTGAAGGCGCAGGATCTGTGGTTTGCGA 919577 Query 255339 TGGTGCGCAT-GCAGCTGGAAACCGGAATGCCGTTCCTATTGCACAAAGA 255387 | | || || ||| |||||||||| |||||| | | || |||| || Sbjct 919576 TAAT-CGAATCGCAAGTGGAAACCGGCGTGCCGTACATGCTGTACAAGGA 919528 >seq2001 Length=1904535 Score = 98.7 bits (108), Expect = 3e-15 Identities = 124/169 (73%), Gaps = 1/169 (1%) Strand=Plus/Plus Query 443696 CAGCTTCGTCGAGCGACTAGTCGCTTTTGCTGTGGTCGAAGGACTGTTGTTTAGCGGCAG 443755 || ||| | |||||| | || || || |||| ||| || || | || || |||||||| Sbjct 1560173 CAACTTTGGCGAGCGGGTCGTGGCATTCGCTGCGGTTGAGGGTATCTTCTTCAGCGGCAG 1560232 Query 443756 CTTTAGCCTCCATCTTCTGGTTGAAAAAGCGTGGACTTATGCACGGTCTGACCTTTAGTA 443815 | || ||| | ||||||||| |||| || ||||| || |||| || || ||||| | Sbjct 1560233 C-TTCGCCGCGATCTTCTGGCTGAAGAAACGTGGCCTGATGCCAGGACTCACCTTCTCGA 1560291 Query 443816 ACGAACTGATCAGTCGGGACGAGGGTTTGCATTGCGACTTCGCCTGTCT 443864 |||| |||||| || ||||| || |||| |||||||| ||||| || Sbjct 1560292 ACGAGCTGATCTCGCGCGACGAAGGGCTGCACTGCGACTTTGCCTGCCT 1560340 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1588278550383235