Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq2381 248 1e-60 seq2325 167 3e-36 seq2001 149 7e-31 >seq2381 Length=1337761 Score = 248 bits (274), Expect = 1e-60 Identities = 477/700 (68%), Gaps = 4/700 (1%) Strand=Plus/Minus Query 53270 TACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACGAATCACCCTCAGATGTCG 53329 |||||||| |||||| ||||||| |||| || | |||| | | ||| ||| | ||| Sbjct 920165 TACTTTACCCACGCCTCGCCAACTATGTTTGCGGCGGCTACGCAGCGCCCCCAGCTTTCG 920106 Query 53330 AGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGCATCTACGAGACGCTCAAG 53389 |||||||||| || | ||| || || || || ||||||||||| ||||| ||| Sbjct 920105 TCCTGCTTCCTGTTGACCATGTCCGAAGATAGCATTGAGGGCATCTACGACACGCTGAAG 920046 Query 53390 GAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATCCAC-TGCTC-GAACGTCC 53447 ||||||||| || || |||| | | ||||| ||||| | || ||| | | | | | Sbjct 920045 CAGTGTGCCCTAATTTCAAAGTCGGCCGGTGGCATCGGACTGAACGTGCACTGTA--TTC 919988 Query 53448 GTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCGATGGAATCGTGCCTATGC 53507 | ||||| || || ||| || |||||||| | | | || | ||||| ||| Sbjct 919987 GCGCGAAGGGAACGTACATCTCCGGTACGAACGGGATTTCAAACGGTCTGGTGCCGATGT 919928 Query 53508 TCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTGGTGGGAAGCGCAAGGGGT 53567 | ||||||| |||||| ||||| ||||||||| | ||||| ||| ||||| || Sbjct 919927 TGCGCGTCTACAACAATACGGCACGGTACGTCGATCAGGGCGGTAACAAGCGGCCTGGAG 919868 Query 53568 CGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGGAGTTTCTCGAGCTGCGTC 53627 | ||||||||||| |||||||||||||| | ||| || | ||||||||||| ||| Sbjct 919867 CATTCGCCATCTATCTCGAGCCGTGGCATGGCGATATATTCGAGTTTCTCGATCTGAAGA 919808 Query 53628 TGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTACAGCTCTGTGGATTCCGG 53687 || || | || ||| | ||| || ||| ||||| || |||||||| |||| Sbjct 919807 AAAACACCGGCAAGGAGGAGGTCCGCGCACGGGACATGTTTTACGCACTGTGGATACCGG 919748 Query 53688 ACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACCTGATGTGCCCGAACGAGT 53747 |||| |||||||| |||||| | |||| |||| ||||||||||||| |||| | Sbjct 919747 ACCTGTTCATGCAGCGTGTGGAGGCGAACGAAATGTGGAGCCTGATGTGCCCGCACGATT 919688 Query 53748 GCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGATGTATCGGACGTACGCAG 53807 | ||||| || || || || || ||||| | || |||| | ||||| Sbjct 919687 GTCCCGGGCTATCGGACACCTGGGGCGAAGAGTTCGAGAAGCTGTACACGGGGTACGAGA 919628 Query 53808 TTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTATGGGATGCAATCCTCAAGA 53867 |||| |||| | | |||| ||||||| || | ||| ||| || || | Sbjct 919627 AAGAGGGTCGCTTTATGCGACAGGTGAAGGCGCAGGATCTGTGGTTTGCGATAATCGAAT 919568 Query 53868 GCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATTCGGTCAACGAGAAGAGCA 53927 || ||||| || || |||||||||| ||||||||| | ||| || || | Sbjct 919567 CGCAAGTGGAAACCGGCGTGCCGTACATGCTGTACAAGGATGCTTGCAATCGTAAAAGTA 919508 Query 53928 ACCAGAAGAACATCGGCGTCATCAAATCGAGCAACTTATG 53967 ||||| |||| |||||| |||||||| |||||| || Sbjct 919507 ACCAGCAGAATATCGGCACCATCAAATGTTCCAACTTGTG 919468 >seq2325 Length=2510080 Score = 167 bits (184), Expect = 3e-36 Identities = 293/421 (70%), Gaps = 17/421 (4%) Strand=Plus/Plus Query 152742 CAGCTTCGGCCAGTACACGTGGAACATGTTGAGGACCAAGCCCTTGATGTGCGATCCGTC 152801 ||||| |||||||| | ||||| | ||| | | || |||||||||||||| ||||| Sbjct 543884 CAGCTCCGGCCAGTTCGTGTGGATGAAGTTAATCAGCAGCCCCTTGATGTGCGACCCGTC 543943 Query 152802 AAGATCCGCGTCGGTCATGATCATCA----GACG-ACCGTAGCG----CAGGTCA--CGT 152850 ||||| |||||||||||||||| | || |||| |||| |||||| | | Sbjct 543944 CTGATCCTGATCGGTCATGATCATCACCTTGCCGTACCGGAGCGTCTTCAGGTCGTCCAT 544003 Query 152851 AGTGACCCGTAGACCTTTCCATGT--TGAAGCCCGAGGATCTTTTTGAGGTTGGAAAATT 152908 |||| ||| ||| | ||| || || ||||||||||| | |||||| || || Sbjct 544004 CGTGAG--GTACTTCTT--CTTGTACTGCAGGCCGAGGATCTTGATCAGGTTGTTAATTT 544059 Query 152909 CCTCATTATCGGTCACCTGTTTCACCGTGGCATCCCGAACATTGCGCGGCTTTCCCCGGA 152968 || |||| || | ||| || ||| || || || || || || |||| || || | Sbjct 544060 CCGCATTCTCCAGGATCTGCTTGTGCGTTGCCTCGCGCACGTTCAGCAGCTTACCGCGCA 544119 Query 152969 GTGGAAACACGCCGAACGCGTTGCGGCCTACAACGCTCAGACCGGCAATAGCAAGGGCTT 153028 | |||||||||||| ||| || ||| || || || | ||| |||| | || || | || Sbjct 544120 GCGGAAACACGCCGTACGTGTCGCGCCCGACCACCCCCAGCCCGGACACGGCGAGCGTTT 544179 Query 153029 TCGCCGAGTCACCCTCGGTGATAATAAGCGTACAGTCGTGAGACCGATGAGTACCGGCCC 153088 | |||||||| |||||||||| || ||||| |||| | | || | | ||||| Sbjct 544180 TGGCCGAGTCTCCCTCGGTGAGGATGAGCGTGCAGTTGAGCGAGTTGCGCGAGCCGGCAT 544239 Query 153089 AGTTGGCGTCGTCAAGCTTGGGGATTCCCGTGATCCTGCTTTTCTTAGAGCCGTCGGTTT 153148 ||| ||||| || ||||| ||||| ||| ||||| | ||||| |||||| |||| Sbjct 544240 CGTTCGCGTCCTCCAGCTTCGGGATGCCCTTGATCTTCGACTTCTTCGAGCCGGACGTTT 544299 Query 153149 T 153149 | Sbjct 544300 T 544300 Score = 149 bits (164), Expect = 7e-31 Identities = 284/411 (69%), Gaps = 17/411 (4%) Strand=Plus/Plus Query 117977 AGCTGAGGCCAGTACACGTGGATCATGTTCAGCACGAGCCCCTTGATATGGGAACCGTCC 118036 |||| ||||||| | |||||| | ||| | || ||||||||||| || || |||||| Sbjct 543885 AGCTCCGGCCAGTTCGTGTGGATGAAGTTAATCAGCAGCCCCTTGATGTGCGACCCGTCC 543944 Query 118037 AGATCCGCATCGGTCATGATCATCAGGCGGCCGTACCGTAAA-TCTCTCAGGGAGTTA-- 118093 ||||| ||||||||||||||||| ||||||||| | ||| ||||| || Sbjct 543945 TGATCCTGATCGGTCATGATCATCACCTTGCCGTACCGGAGCGTCT-TCAGGTCGTCCAT 544003 Query 118094 --TAA---ACCTTACCATGT--TGGAGCCCGAGGATCTTTTTAAGGTTGGAAAATTCCTC 118146 | | || | | ||| || || ||||||||||| | |||||| || |||| | Sbjct 544004 CGTGAGGTACTTCTTCTTGTACTGCAGGCCGAGGATCTTGATCAGGTTGTTAATTTCCGC 544063 Query 118147 ATTTTCCGTCACCTGTTTTATGGTGGCGTCCCGAACGTTGCGCGGCTTACCCCGCAGTGG 118206 ||| ||| | ||| || || || || || ||||| || ||||||| ||||| || Sbjct 544064 ATTCTCCAGGATCTGCTTGTGCGTTGCCTCGCGCACGTTCAGCAGCTTACCGCGCAGCGG 544123 Query 118207 AAACACGCCAAACTTGTCACGGCCCACAACGCTCAAGCCGGCAATAGCAAGGGCCTTCGC 118266 ||||||||| || |||| || || || || | || |||| | || || | || || Sbjct 544124 AAACACGCCGTACGTGTCGCGCCCGACCACCCCCAGCCCGGACACGGCGAGCGTTTTGGC 544183 Query 118267 CGAGTCACCCTCGGTAATAATAAGAGTGCACTCG---GTGCTGCGATGAGTACCGGCCCA 118323 |||||| |||||||| | || || ||||| | | | | |||| ||| ||||| Sbjct 544184 CGAGTCTCCCTCGGTGAGGATGAGCGTGCAGTTGAGCGAGTTGCG-CGAG--CCGGCATC 544240 Query 118324 ATTAGCATCATCCAGCTTCGGAACGCCCGTAATGCGCGACTTTTTGGACCC 118374 || || || ||||||||||| | |||| | || |||||| || || || Sbjct 544241 GTTCGCGTCCTCCAGCTTCGGGATGCCCTTGATCTTCGACTTCTTCGAGCC 544291 Score = 123 bits (136), Expect = 3e-23 Identities = 287/429 (67%), Gaps = 14/429 (3%) Strand=Plus/Plus Query 117150 ACCCAGTTCCGATACCCTCTGCACCATTCATCAGAATCATCGGCACGACAGGAACGTAGA 117209 ||||||| |||||||| || || || || ||||| | |||||| | || || | || Sbjct 542995 ACCCAGTGCCGATACCGTCCGCCCCGTTGATCAGCAGCATCGGAATGATCGGCAGATACC 543054 Query 117210 ACTCAGGCTCCACCTGCAGACCGTCGTCCGTGAC--GTACTTGAGCACCGCATTGTCACT 117267 | | ||||| | || || || || || || ||||| ||||| || || ||| Sbjct 543055 AAACCGGCTCGATGCGCTGATTATCCTC-GT-ACTGGTACTCGAGCAGCGGATCGTCGAG 543112 Query 117268 CGGATCGAATATGTTCTTGGTCCACGGTGCTAGGCGAGTGAAAATGTAACGAGAGCTTGC 117327 ||| | ||| |||| | ||| || | || ||||| ||||| | | ||| || Sbjct 543113 CGGGTGGAAGATGTGCCGCGTCAGCGCGGACAGCATCGTGAAGATGTACCTGGGGCTGGC 543172 Query 117328 AGCATCCTTGCCACCAGCAAGACGCGTACCGAATTGTCCACTCGGCTCCAAGAGGTTCAG 117387 ||||||||||| | || ||||||||||| || || | ||| | ||| || || | Sbjct 543173 GCTGTCCTTGCCACCCGTCAGCCGCGTACCGAACTGACCGCCCGGGTACAACAGATTGAT 543232 Query 117388 GTTGTTGGCGCCCACAAAGTTTTGAGCCAAGTTGACAATCGTACCTTGGAGGCTCGCCTC 117447 ||||||| ||| || |||| || |||| ||||| ||||| ||| | ||| Sbjct 543233 GTTGTTGCTGCCGACGTAGTTCTGCGCCAGGTTGATGATCGTGGAGCAGAGCGACATCTC 543292 Query 117448 ACCATGGTGATACGCCGTCTGCTCCGCCACGTAGCCCGCCAGCTGAGCCACCTTCATGTC 117507 || || || || || | || |||||||| | || |||||||| |||||||||| || Sbjct 543293 GCCGTGATGGTAGGCGGACTTTTCCGCCACTGAACCGGCCAGCTGGGCCACCTTCACCTC 543352 Query 117508 -----TGACGTCAGGTTCTTCTTGAGGCAGGCATAAATCACCTTGCGCTGACTTGGCTTC 117562 || ||||| | ||||| ||| | || | |||||||||||| | |||||| Sbjct 543353 GCGCTTGTCGTCACG-----CTTGAAGCACGTGTACAGCACCTTGCGCTGGCCCGGCTTC 543407 Query 117563 AGACCATCC 117571 | || ||| Sbjct 543408 AACCCGTCC 543416 Score = 113 bits (124), Expect = 5e-20 Identities = 209/305 (69%), Gaps = 14/305 (5%) Strand=Plus/Plus Query 152028 CGTGAAGATGTATCGGGAGCTGGCCGCATCCTTGCCACCTGCCAGCCGCGTTCCAAACTG 152087 |||||||||||| | || |||||| ||||||||||| | ||||||||| || ||||| Sbjct 543149 CGTGAAGATGTACCTGGGGCTGGCGCTGTCCTTGCCACCCGTCAGCCGCGTACCGAACTG 543208 Query 152088 TCCAGAGGGCTCGAGGAGGTTGAGGTTGTTGGCGCCCACGAAATTCTGAGCCAAATTCAC 152147 || || | | || |||| ||||||| ||| ||| | ||||| |||| || | Sbjct 543209 ACCGCCCGGGTACAACAGATTGATGTTGTTGCTGCCGACGTAGTTCTGCGCCAGGTTGAT 543268 Query 152148 AATCGTGCCCTGCAGA--CTCGCTTCACCGTGGTGATACGCCGTCTGCTCCGCGATGTAT 152205 |||||| ||||| | || ||||| || || || | || ||||| | | Sbjct 543269 GATCGTG--GAGCAGAGCGACATCTCGCCGTGATGGTAGGCGGACTTTTCCGCCACTGAA 543326 Query 152206 CCCGCCAACTGCGCCACCTTCATGTC-----CGTCGTCAGGTTCTTCTTGAGACAGGCGT 152260 || |||| ||| |||||||||| || ||||||| | ||||| || | || Sbjct 543327 CCGGCCAGCTGGGCCACCTTCACCTCGCGCTTGTCGTCACG-----CTTGAAGCACGTGT 543381 Query 152261 AAATCACCTTGCGCTGGGATGGTTTCAAACCGTCCACCACGTGAGGAATCGAACGCTTGA 152320 | | ||||||||||||| || ||||| ||||||| || | ||||| || ||| | Sbjct 543382 ACAGCACCTTGCGCTGGCCCGGCTTCAACCCGTCCAGCATGCACGGAATGGAGCGCACGT 543441 Query 152321 TGTCC 152325 ||||| Sbjct 543442 TGTCC 543446 >seq2001 Length=1904535 Score = 149 bits (164), Expect = 7e-31 Identities = 259/372 (70%), Gaps = 11/372 (3%) Strand=Plus/Minus Query 124481 CGCCACCTCGATAAACTCACGGATGCTGTGCGTCTCACCCGTGCCAATCACGAAATCTTC 124540 |||| ||| | |||||| || | |||||| || ||||| | |||||||||||||| Sbjct 860962 CGCCTGCTCCACAAACTCCCGCACCGAGTGCGTTTCGCCCGTCGCGATCACGAAATCTTC 860903 Query 124541 GGGAATCGACTGCTGCAACATAAGCCACATGGCTTGGACGTAGTCCTCTGCGTGCCCCCA 124600 || | |||||||| ||| |||||||| || | ||||||||||| ||||| ||||| Sbjct 860902 CGGCCGCTCCTGCTGCATCATCAGCCACATCGCCTCGACGTAGTCCTTCGCGTGGCCCCA 860843 Query 124601 GTCGCGCTTGGCATCCAGGTTTCCGAGCTCGATTGGCT-----TGGCCG-TCTTGTTCCA 124654 ||||||||| | || || || || ||||| | || |||||| | || Sbjct 860842 GTCGCGCTTCGAGTCGAGATTGCCCAGCTCCAGGTACTCCTGCTGGCCGAGCGAAATCTT 860783 Query 124655 CTCCGCCAAACCCAGTGTAATCTTGCGCGTCACAAACTCGGAACCGCGTCGCTCAGACTC 124714 || || | | | || || ||||||||||| || | || || ||| ||||| Sbjct 860782 GGCCACCGAGC---GGGTGATTTTGCGCGTCACGAAGTTCTCCCCCCGGCGCGGCGACTC 860726 Query 124715 GTGGTTGAACAGAATGCCAGTACACGCAAACATCCCGTACGACTCGCGGTAGTTTTTCGT 124774 ||| |||||||| ||||| | || || ||||| |||||| ||||| ||||| || Sbjct 860725 GTGATTGAACAGGATGCCGTTGCAGGCGAACATGTCGTACGCTTCGCGATAGTTGATCAC 860666 Query 124775 CATCCAATACCCAAAGAGCTTGG-ACACGCCATAGGGGCTTCGGGGGTAGAATGGGGTGT 124833 ||||| || || | | ||||| ||||| | || || ||||| ||||| ||||| | Sbjct 860665 AATCCAGTAGCCGTACATCTTGGCACACG-CGTACGGCGAGCGGGGATAGAACGGGGTCT 860607 Query 124834 TTTCATTTTGGG 124845 |||| || |||| Sbjct 860606 TTTCGTTCTGGG 860595 Score = 118 bits (130), Expect = 1e-21 Identities = 229/331 (69%), Gaps = 9/331 (3%) Strand=Plus/Minus Query 158958 GTGCGTCTCTCCAGTCGCAATCACAAAGTCCTCTGGACCGGGCTGTTGGAGCATGAGCCA 159017 |||||| || || ||||| ||||| || || || || | ||| || | ||| ||||| Sbjct 860935 GTGCGTTTCGCCCGTCGCGATCACGAAATCTTCCGGCCGCTCCTGCTGCATCATCAGCCA 860876 Query 159018 CATGGCCTCGACGTAATCCTGCGCGTGACCCCAGTCGCGCTTGGCATCCATGTTCCCGAG 159077 ||| ||||||||||| |||| |||||| |||||||||||||| | || | || || || Sbjct 860875 CATCGCCTCGACGTAGTCCTTCGCGTGGCCCCAGTCGCGCTTCGAGTCGAGATTGCCCAG 860816 Query 159078 CTCGATG-ACTTTTCCAGACTTTTTCCA--CTCAGCCAGACCGAGC--GTGATCTTGCGC 159132 ||| | | ||| | | | | | || ||| ||||||| ||||| |||||| Sbjct 860815 CTCCAGGTACTCCTGCTGGCCGAGCGAAATCTTGGCC--ACCGAGCGGGTGATTTTGCGC 860758 Query 159133 GTCACAAACTCTGCTCCGCGCCGTTCCGACTCATGGTTAAACAGAATGCCGGTACAAGCG 159192 ||||| || | | || || || |||||| || || ||||| |||||| | || ||| Sbjct 860757 GTCACGAAGTTCTCCCCCCGGCGCGGCGACTCGTGATTGAACAGGATGCCGTTGCAGGCG 860698 Query 159193 AACAGGTTATAGGACTCGCGGTAATTTTTAGTTATCCAGTATCCAAAGAGCTTGG-AGAC 159251 |||| || || | ||||| || || | |||||||| || | | ||||| | || Sbjct 860697 AACATGTCGTACGCTTCGCGATAGTTGATCACAATCCAGTAGCCGTACATCTTGGCACAC 860638 Query 159252 GCCGTATGGACTCCGAGGATAAAATGGTGTC 159282 | |||| || || ||||| || || ||| Sbjct 860637 G-CGTACGGCGAGCGGGGATAGAACGGGGTC 860608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547196690115400