Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq2381 246 3e-60 seq224 187 3e-42 seq113 170 2e-37 seq2325 141 1e-28 seq2001 86.0 7e-12 >seq2381 Length=1337761 Score = 246 bits (272), Expect = 3e-60 Identities = 1137/1761 (65%), Gaps = 86/1761 (5%) Strand=Plus/Plus Query 80038 GTCCGCAGATAGTACATGCCCGTCTTGAGGCCCTTCTTCCAGCCGTACAGGTGCATAGAA 80097 || ||||||||||||||||| || || | ||| ||||||||||||| | || || || Sbjct 918532 GTACGCAGATAGTACATGCCAGTTTTCAAACCCATCTTCCAGCCGTAGAAATGGATCGAC 918591 Query 80098 CTGAGCTTCGCA-AGTGTGGGGTTCTCCATGAAG---ATGTTCAGAGACTGAGACTGACA 80153 | ||||| || ||| ||| |||| || | ||||| | || || |||||| Sbjct 918592 GTCAGCTTGCCATAGTTTGG----CTCCGCGACGTGAATGTTGAACGATTGCGACTGATC 918647 Query 80154 GATGAAAGCCCCACGATCTGCCGCCATTTCAATAATTGACTTTTGTG--GA-ATTTCCCA 80210 ||| || || ||||||||||| ||||||| | || || ||| || || ||||| Sbjct 918648 GATAAACGCACCACGATCTGCGGCCATTT---TGATGCACGTTTTCACCGAGATCTCCCA 918704 Query 80211 TACTGTACGATACACCTTACGAAGCTCCTCTGGAATGTCCAGA---TTTTGCACACTGCC 80267 ||| || |||| | |||| |||| || || || | ||||| | || Sbjct 918705 TACCGTTTTGTACAGGTCGCGAATTTCCTGCGGTATAGCCGCAATCTTTTGGATCGATCC 918764 Query 80268 ACCGTCCTTTACAATTTGATTTTTCAATTCAGACGTCC-AGACACCAAGCTTGTGCAGAT 80326 | || | ||||| || |||| || || ||| | | ||| | ||| || || Sbjct 918765 ATTGTTGGACAGAATTTCGTTCTTCATGTC-GAGATCCCACAGACCCATGTTGGTCAAAT 918823 Query 80327 CTTTCACAAGGTGCTTGTTAATCATGACAAACTCTCCCGCGAGGGTGCGACGCAGATACA 80386 | | || ||| || | ||| | || ||||| |||| || ||| | || | Sbjct 918824 CCTGCAGAAGATGATGGTTCACCACCTGGAACTCGCCCGACAGCACGCGCCTATTGTAAA 918883 Query 80387 GGTTTGTAGTGTAAGGCTCAAATGCCTCGTTGTTTCCGAGGATCTGAGCCGTGCTCGCCG 80446 ||| | ||||| ||||| || | || ||||| ||||| || || |||||| |||| Sbjct 918884 CGTTCGACGTGTACGGCTCGAACGATTCATTGTTGCCGAGAATTTGTGCCGTGGAAGCCG 918943 Query 80447 TCGGCATCGGGCCGACCAACAGTGAATTCCGCAGGCCGTGCTTCTTGATATCCTCGCGCA 80506 ||||||||||| | | || ||| ||||| || | ||||| || ||| | || || Sbjct 918944 TCGGCATCGGGGCCAACAGCAGCGAATTGCGAATACCGTGTTTGGCGATCTTTTCCTTCA 919003 Query 80507 AATCTGACCAAAAATCAACCCCAACGCTGTGACC-----CCACATGTCGTGCTGCAAGAT 80561 | || | ||| || || || | || |||||| |||| ||||||||| Sbjct 919004 ACTCGGCCCAGT--TCCACAGATCCGTCGGTTCCTTGTTCCACATCTCGTACTGCAAGAT 919061 Query 80562 GCCCTCCGACGCCGGAGACCCCGCGAACGTCTCGTACGGGCCCTCCGTCTTGGCCAGCTC 80621 ||||| | ||||| ||| || ||||||||||||| || || ||||| ||| Sbjct 919062 GCCCTTGCTCACCGGACTGCCCTCGTACGTCTCGTACGGACCATCTCGAGCGGCCAACTC 919121 Query 80622 ACA---CGACTCCATAAGGGCCGCGTGATAAATGCACTCAAAGACGCCCTTGTTCACACC 80678 ||| || |||| | || ||| || || || || | || || | Sbjct 919122 ACAGCTCGCTTCCA---GCGCGCCGTAGTAGATAGTTTCGAATATTTGCTGATTTAGCTT 919178 Query 80679 GCGCGCCTGTGGGTCGTCGAACGACAAGCCCATCATCATGAACACGTCAGCCAGGCCCTG 80738 | |||| | | ||| ||| ||| ||||| |||||| | || |||| ||| || Sbjct 919179 TTGAGCCTCTTCGCTTTCGTACGGATAGCGCATCAGGATGAACGCATCGGCCATGCCTTG 919238 Query 80739 AACGCCGATGGCGATCGGGCGGTGGCGCTTGTTCGATCGCTCGGCCTCCGGAATTGGGTA 80798 |||||||| ||||||| | ||||||| | || || |||| |||||||| | || || Sbjct 919239 CACGCCGATCCCGATCGGCCTGTGGCGCATATTGGAGCGCTTAGCCTCCGGCACGGGATA 919298 Query 80799 AAAGTTATTATCGATGACGCGGTTCAGGTTGCGTGTAACAACCCGTGTAACATCATGAAG 80858 | || ||| |||| |||||| ||||| || || | | || || | || Sbjct 919299 GTAATTGACATCAATGATTTTGTTCAGATTGCGCGTCACTGTCTTAGCGACTTCCTTCAG 919358 Query 80859 TTTCTGAAAGTCGAA---TTGGTTCCCCTTCACAAA--TGCCGGAAGGCTCAGGGACGCC 80913 || |||||| | || || ||| ||||| || ||||| | || ||| Sbjct 919359 CTTTGCAAAGTCATACGTTTTGTCTTGCTTTACAAACATGTTC-AAGGCG-ATCGAGGCC 919416 Query 80914 AGATTGCACACGGCCACCTCTTCAGCATCTGTAA--ACTCGACGATTTCCGTGCACAAAT 80971 |||||||| || || ||||| || | || | |||| || || || |||||||| | Sbjct 919417 AGATTGCATACCGCTACCTCATC--CTTCGACGAGTACTCCACAATCTCAGTGCACAAGT 919474 Query 80972 TAGAAGACTTAATTGTACCCAGGTTTTTCTGGTTTGACTTGG-CG-TTGCAAGCGTCCTT 81029 | ||| | || || || || | || | |||||| |||| || |||||||| ||||| Sbjct 919475 TGGAACATTTGATGGTGCCGATATTCTGCTGGTT--ACTTTTACGATTGCAAGCATCCTT 919532 Query 81030 GTAGCACATGTACGGGGTACCGGTCTCGACCTGTGACTTGAGGATGGCGTCCCAAATCTC 81089 ||| ||||||||| ||||| || || || || | || || || ||| | || Sbjct 919533 GTACAGCATGTACGGCACGCCGGTTTCCACTTGCGATTCGATTATCGCAAACCACAGATC 919592 Query 81090 GCGCGCCTTGACCACCTTGCGGAATTTG-CCTTCGGCCACATACTTGGCGTA-AGCTTCG 81147 ||||||| ||| | || || | || || | | ||| | ||| |||||| Sbjct 919593 CTGCGCCTTCACCTG-TCGCATAAAGCGACCCTCTTTCTCGTACCCCGTGTACAGCTTC- 919650 Query 81148 TCGAACT--TGGCACCGTGAAGT-TCAGTGAGGTCTGGGCACTCGTTAGGGCACATCAGG 81204 ||||||| | || || | || || | || | || || |||| |||||||||||| Sbjct 919651 TCGAACTCTTCGCCCC---AGGTGTCCGATAGCCCGGGACAATCGTGCGGGCACATCAGG 919707 Query 81205 TGCCAGTCGGTGTCGTTC---TCTACAGCCTTCATGAAAGCGTCAGGGATCCAGAGGGCG 81261 ||| | |||||| || ||| || |||||| ||| || ||||| || ||| Sbjct 919708 CTCCACA---TTTCGTTCGCCTCCACACGCTGCATGAACAGGTCCGGTATCCACAGTGCG 919764 Query 81262 GTGAACAGGTCGCGGCAGCGCGCCTCCTCATCACCCTGGTTGAGGCGCAACTCGAGAAAG 81321 |||| ||| || ||| ||||||| | || ||| || |||||||| Sbjct 919765 TAAAACATGTCCCGTGCGCGGACCTCCTCCTTGCCGGTGTTTTTCTTCAGATCGAGAAAC 919824 Query 81322 TCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCGA----TCGA--CCCCTTGCGA 81375 || | || || ||||||| ||||| ||||| | ||||| || | || |||| | Sbjct 919825 TCGAATATATCGCCATGCCACGGCTCGAGATAGATGGCGAATGCTCCAGGCCGCTTGTTA 919884 Query 81376 CGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAATACACGCAACATAGGGATGATA 81435 | ||| ||| | |||||| || || || ||| | || |||||||| || | | | Sbjct 919885 CCGCC---CTGATCGACGTACCGTGCCGTATTGTTGTAGACGCGCAACATCGGCACCAGA 919941 Query 81436 CCATCTGACTGACCGTTCGTACCCACGATACGCGACCCCTTGGCGCGCA--CCTTGCTGA 81493 || | ||| ||||||||||| ||| || ||||| ||||| | | ||| Sbjct 919942 CCGTTTGAAATCCCGTTCGTACCGGAGATGTACGTTCCCTTCGCGCGAATACAGTGCACG 920001 Query 81494 TTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAGCACACCGGTTCATGGTCTCAT 81553 || | | ||||||||||| | | |||||||||| | |||||| | |||| || || | Sbjct 920002 TTCA--GTCCGATGCCACCGGCCGACTTTGAAATTAGGGCACACTGCTTCAGCGTGTCGT 920059 Query 81554 AAATTCCCTCGATGCTATCTTTTTTCAT-GTCAAGCAAGAAACAGCTTGACATCTGAGGG 81612 | || ||||| |||||||||| ||| ||||| || ||| ||| || | ||| ||| Sbjct 920060 AGATGCCCTCAATGCTATCTTCGGACATGGTCAA-CAGGAAGCAGGACGAAAGCTGGGGG 920118 Query 81613 CTTTTTG-AGCCG--GCATTGAACAGTGTTGGGGTCGCGTGAATGAAATAACGGTTTGAC 81669 | | | ||||| ||| |||| ||||| | ||||| | || ||||| | ||| Sbjct 920119 CGCTGCGTAGCCGCCGCA---AACATAGTTGGCGAGGCGTGGGTAAAGTAACGCTCGGAC 920175 Query 81670 ATCAGGTCATAGGTTTC-CTTGACGCGTGGAATATCGTCACCGTGAATACCGATAGCTAC 81728 | ||| | ||||| || | | || | | || || || || || || || ||||| || Sbjct 920176 AGCAGATTGTAGGTCTCGATCGCTGCATCG-ATGTCCTCGCCATGGATGCCAATAGCAAC 920234 Query 81729 ACGCATAAACATGTACTGGGG 81749 ||||| | ||||| |||||| Sbjct 920235 GCGCATCAGCATGTGCTGGGG 920255 >seq224 Length=3387546 Score = 187 bits (206), Expect = 3e-42 Identities = 178/228 (78%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || || ||||| ||||| || ||||| ||||||||| || Sbjct 1793860 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACTCTGGAGGTTGAGCCATCG 1793801 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| || | ||||| || || ||||||||||||||||| || ||||| ||| Sbjct 1793800 GATACGATTGAGAACGTCAAGGCAAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 1793741 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || || |||| || ||||| | |||||||| Sbjct 1793740 CAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAAC 1793681 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| |||||||||||||||||||| || | ||||| || |||||| Sbjct 1793680 ATCCAGAAGGAATCCACTCTTCATCTGGTGCTCCGTCTGCGTGGTGGA 1793633 Score = 176 bits (194), Expect = 5e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || || ||||| ||||| || || || ||||| || || Sbjct 1794088 ATGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTCGAGGTCGAACCATCC 1794029 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| |||| ||| ||||||| || || ||||||||||||||||| || ||||| ||| Sbjct 1794028 GATACGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 1793969 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || ||||| ||||| || ||||||| || ||||| | |||||||| Sbjct 1793968 CAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGACTATAAC 1793909 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| ||||| |||||||| || | ||||| || ||||| Sbjct 1793908 ATCCAGAAGGAGTCCACCCTTCATCTGGTTCTCCGTCTGCGTGGTGG 1793862 >seq113 Length=3238079 Score = 170 bits (188), Expect = 2e-37 Identities = 174/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| ||||| || || || || ||||| ||||| |||||||| ||| | Sbjct 854707 ATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCG 854766 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | ||| ||||||| || || ||||||||||||||||| || ||||| ||| Sbjct 854767 GATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAG 854826 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || ||||||| || || || | ||||| || Sbjct 854827 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGACTACAAC 854886 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||| ||||| || || |||||||| || |||| || |||||||| Sbjct 854887 ATCCAGAAGGAGTCGACCCTTCATCTGGTGCTGCGCCTGCGCGGTGG 854933 Score = 158 bits (174), Expect = 1e-33 Identities = 171/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || || || || ||||||||||| || || |||||||| ||| | Sbjct 1949306 ATGCAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCG 1949247 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | ||| ||||||| || || ||||||||||| || ||||| ||||| ||| Sbjct 1949246 GACACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAG 1949187 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 |||||||| || || || || ||||| || ||||||| ||| || || | ||||| || Sbjct 1949186 CAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACTACAAC 1949127 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || |||||||| || |||||||| || |||| || || ||||| Sbjct 1949126 ATTCAGAAGGAATCGACCCTTCATCTGGTGCTGCGACTCCGTGGTGG 1949080 >seq2325 Length=2510080 Score = 141 bits (156), Expect = 1e-28 Identities = 301/447 (67%), Gaps = 8/447 (2%) Strand=Plus/Minus Query 31962 GCGGTCCATTCCACACGTGGCGGACGGCCTCAAGCCTTCACAGCGCAAGGTGATATACGC 32021 ||| |||||||| | || |||||| | ||||| |||||||||||| | ||| | Sbjct 543437 GCGCTCCATTCCGTGCATGCTGGACGGGTTGAAGCCGGGCCAGCGCAAGGTGCTGTACAC 543378 Query 32022 CTGCCTCAAGAAGAACCTGTCGAGTGACATGAAGGTGGCGCAGCTGTCGGGCTACGTGGC 32081 ||| ||||| || | | || |||||||||| |||||| | || | ||||| Sbjct 543377 GTGCTTCAAGCGTGACGACAAGCGCGAGGTGAAGGTGGCCCAGCTGGCCGGTTCAGTGGC 543318 Query 32082 AGAGCAAACGGCCTATCACCACGGCGAGGCGTCGCTCCAGGGCACCATTGTCAACCTTGC 32141 || | | ||||| || ||||||||| ||||||| ||| || ||||||| || Sbjct 543317 GGAAAAGTCCGCCTACCATCACGGCGAGATGTCGCTCTGCTCCACGATCATCAACCTGGC 543258 Query 32142 TCAGAACTTTGTCGGTGCAAATAACCTGAACTTACTCGAGCCATCTGGACAGTTTGGGAC 32201 ||||||| ||||| || ||| | || | | | || || ||||| || || Sbjct 543257 GCAGAACTACGTCGGCAGCAACAACATCAATCTGTTGTACCCGGGCGGTCAGTTCGGTAC 543198 Query 32202 CCGGCTCGCCGGTGGCAAGGATGCTGCGAGCTCCCGTTACATCTTCAC----CCGTCTCG 32257 ||||| | ||||||||||| || ||| || | ||||||||||| | ||| || Sbjct 543197 GCGGCTGACGGGTGGCAAGGACAGCGCCAGCCCCAGGTACATCTTCACGATGCTGTC-CG 543139 Query 32258 CACCTTCGACGCGCAAGATTTTCGACCCGTCGGACGATGCGGTGCTCAAGTACAATTTTG 32317 | | |||||| | || ||| ||||| |||||| || ||||| ||||| | | | Sbjct 543138 CGC---TGACGCGGCACATCTTCCACCCGCTCGACGATCCGCTGCTCGAGTACCAGTACG 543082 Query 32318 ATGACGGTCAGCGGGTCGAGCCGGTGTTCTACAGTCCGGTGCTTCCGATGATCTTGGTGA 32377 | || |||||| |||||||||| | || ||| | |||||||| | || | | Sbjct 543081 AGGATAATCAGCGCATCGAGCCGGTTTGGTATCTGCCGATCATTCCGATGCTGCTGATCA 543022 Query 32378 ACGGTGCAGAAGGCATCGGAACGGGGT 32404 |||| || || || ||||| || |||| Sbjct 543021 ACGGGGCGGACGGTATCGGCACTGGGT 542995 Score = 116 bits (128), Expect = 4e-21 Identities = 186/267 (70%), Gaps = 0/267 (0%) Strand=Plus/Minus Query 31177 GGGTCCAAAAAGTCTCGAATTACGGGAATTCCGAAGCTCGACGACGCCAACTGGGCCGGT 31236 || || || ||||| || | ||| || |||||||| || ||||| ||| ||||| Sbjct 544291 GGCTCGAAGAAGTCGAAGATCAAGGGCATCCCGAAGCTGGAGGACGCGAACGATGCCGGC 544232 Query 31237 ACCCACAAGTCGCACGAGTGCACGCTTATTATTACCGAGGGTGACTCGGCAAAGGCGCTT 31296 | | ||| |||| | | |||||||| || | |||||||| |||||||| || |||| Sbjct 544231 TCGCGCAACTCGCTCAACTGCACGCTCATCCTCACCGAGGGAGACTCGGCCAAAACGCTC 544172 Query 31297 GCTATTGCTGGCTTGAGTGTTGTGGGGCGCAATGCGTTCGGGGTGTTTCCGCTCCGAGGC 31356 || | | || || | || || |||||| | ||| ||| ||||||||||| || || Sbjct 544171 GCCGTGTCCGGGCTGGGGGTGGTCGGGCGCGACACGTACGGCGTGTTTCCGCTGCGCGGT 544112 Query 31357 AAGCCGCGTAACGTTCGTGACGCCTCCGTTAAACAGGTTACGGATAATGAAGAGTTTTCC 31416 |||| || ||||| || || || | || ||| | ||| |||| || || | Sbjct 544111 AAGCTGCTGAACGTGCGCGAGGCAACGCACAAGCAGATCCTGGAGAATGCGGAAATTAAC 544052 Query 31417 AACCTGAAAAAGATCCTCGGGCTTCAG 31443 ||||||| ||||||||||| || ||| Sbjct 544051 AACCTGATCAAGATCCTCGGCCTGCAG 544025 >seq2001 Length=1904535 Score = 86.0 bits (94), Expect = 7e-12 Identities = 74/92 (80%), Gaps = 0/92 (0%) Strand=Plus/Plus Query 64774 ATTTTCTGGCTAAAAAAGCGGGGCCTGATGCCAGGTCTGTCGTTTTCGAACGAGCTGATC 64833 || |||||||| || || || |||||||||||||| || | || ||||||||||||||| Sbjct 1560243 ATCTTCTGGCTGAAGAAACGTGGCCTGATGCCAGGACTCACCTTCTCGAACGAGCTGATC 1560302 Query 64834 TCTCGGGACGAGGGGCTCCACCAAGAATTTGC 64865 || || ||||| ||||| ||| || ||||| Sbjct 1560303 TCGCGCGACGAAGGGCTGCACTGCGACTTTGC 1560334 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570290275171760