Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20quadriannulatus_20[genbank_20GCA_5F000349065.1_202013- 03-28] 2,823 sequences; 283,828,998 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq224 165 2e-35 seq113 156 1e-32 >seq224 Length=3387546 Score = 165 bits (182), Expect = 2e-35 Identities = 160/206 (78%), Gaps = 0/206 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || ||||||||||||||||| || ||||| || ||||| || ||||| || || || Sbjct 1793857 CAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACTCTGGAGGTTGAGCCATCGGAT 1793798 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || ||||||||||| |||||| |||||||| || |||||||| || || ||||| Sbjct 1793797 ACGATTGAGAACGTCAAGGCAAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAG 1793738 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || |||||||| ||||| ||||| |||||||| | || || | || |||||| || Sbjct 1793737 CGTCTGATCTTCGCTGGAAAGCAGCTGGAAGATGGCCGCACCCTGTCGGACTATAACATC 1793678 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || ||||| || || ||||| || Sbjct 1793677 CAGAAGGAATCCACTCTTCATCTGGT 1793652 Score = 158 bits (174), Expect = 3e-33 Identities = 166/217 (76%), Gaps = 1/217 (0%) Strand=Plus/Minus Query 177914 TAAAATGCTCCAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGA 177973 |||||| | || ||||||||||||||||| || ||||| || |||||||||||||| || Sbjct 1794094 TAAAATA-TGCAGATTTTCGTGAAAACTCTGACCGGAAAGACCATCACCCTCGAGGTCGA 1794036 Query 177974 AAGCTCAGACACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCC 178033 | || || || || ||||| || || ||||| |||||||| || |||||||| || Sbjct 1794035 ACCATCCGATACGATTGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCC 1793976 Query 178034 GGACCAGCAACGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGA 178093 || ||||| || || |||||||| ||||| ||||| || ||||| | || || | || Sbjct 1793975 AGATCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTGGAGGATGGCCGCACCCTGTCGGA 1793916 Query 178094 TTATAACGTCCAAAAAGAATCAACACTGCATCTTGTT 178130 |||||| |||| || || || || || ||||| ||| Sbjct 1793915 CTATAACATCCAGAAGGAGTCCACCCTTCATCTGGTT 1793879 >seq113 Length=3238079 Score = 156 bits (172), Expect = 1e-32 Identities = 164/216 (76%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || |||||||||||||| ||||| || || || ||||| || ||||| || || ||| Sbjct 1949303 CAGATTTTCGTGAAAACACTCACCGGCAAGACCATCACACTTGAGGTCGAGCCTTCGGAC 1949244 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || |||||| |||||||| ||||| || || || || ||||| Sbjct 1949243 ACGATCGAGAATGTGAAGGCAAAGATCCAGGACAAGGAAGGCATTCCCCCAGATCAGCAG 1949184 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || ||||| | ||||| |||| || ||| | Sbjct 1949183 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGTCGCACTCTCTCCGACTACAACATT 1949124 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGACTC 178139 || || ||||| || || ||||| || || ||||| Sbjct 1949123 CAGAAGGAATCGACCCTTCATCTGGTGCTGCGACTC 1949088 Score = 138 bits (152), Expect = 3e-27 Identities = 154/206 (75%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| ||||| ||||| || || || || ||||| ||||| || ||| || Sbjct 854710 CAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTCGGAT 854769 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || |||||||| || || ||||| |||||||| || |||||||| || || ||||| Sbjct 854770 ACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGAATCCCGCCAGATCAGCAG 854829 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 || || ||||||||||| || ||||| || ||||| | || || |||| || ||| || Sbjct 854830 CGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGCCGCACGCTGTCCGACTACAACATC 854889 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 || || || || || || ||||| || Sbjct 854890 CAGAAGGAGTCGACCCTTCATCTGGT 854915 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203687661418662