Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq9254 228 8e-55 seq9240 143 3e-29 seq9325 120 3e-22 seq8738 113 5e-20 seq8899 104 2e-17 >seq9254 Length=4138565 Score = 228 bits (252), Expect = 8e-55 Identities = 310/430 (72%), Gaps = 2/430 (0%) Strand=Plus/Minus Query 116946 TGTTGAACGCCATCGAGACGATGCCGTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCT 117005 |||| || |||||||| ||| | ||||| || || ||||||| || ||||| ||| || Sbjct 2197471 TGTTCAATGCCATCGAAACGCTACCGTGTGTGAAGAAGAAGGCTGACTGGGCACTGAACT 2197412 Query 117006 GGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGG 117065 |||| | ||| | ||| |||||||||||| | || || || || |||||||||| Sbjct 2197411 GGATTTCGAGCAAGAAAGCCAACTTCGGCGAGCGTGTTGTCGCGTTTGCCGCCGTCGAGG 2197352 Query 117066 GCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGC 117125 | | ||||| ||||| || ||||| || || ||||| ||||| || || || |||| Sbjct 2197351 GAATTTTCTTCAGCGGCAGCTTTGCCGCTATCTTCTGGCTTAAGAAGCGAGGACTGATGC 2197292 Query 117126 CCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTG 117185 | ||| |||| ||| |||||||| || || | |||||||| |||| || ||||||| Sbjct 2197291 CAGGCTTGACCTTCTCGAACGAGCTGATTTCGCGTGACGAGGGCTTGCACTGTGACTTTG 2197232 Query 117186 CCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA-GCGCGGCGCGCGTCAGGGAGATC 117244 | || | ||||||| | |||| || |||| |||| | ||| || | ||| Sbjct 2197231 CTTGCCTTATGTTCAAATACCTGGTTCAAAAGCCGACGCGC-GAGCGTGTGACTAGCATC 2197173 Query 117245 GTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTCACCGAAGCGCTGCCGGTGCGTCTG 117304 | ||| ||||| | ||||| ||| ||||| ||| | |||||||| || | || Sbjct 2197172 ATTCGCGATGCGGTGGTAATCGAACAGGAGTTCCTTACCAAGGCGCTGCCAGTCGATATG 2197113 Query 117305 CTGGGACTCAATTGCGAAACGATGTCGCAATACATCGAGTTCGTCGCCGACAGGCTGCTG 117364 ||||| | || || || ||||||||| |||||||||||||| |||||| |||||||| Sbjct 2197112 CTGGGCATGAACTGTGACCTGATGTCGCAGTACATCGAGTTCGTTGCCGACCGGCTGCTG 2197053 Query 117365 CTCGAGCTGG 117374 ||||| ||| Sbjct 2197052 GTCGAGTTGG 2197043 Score = 223 bits (246), Expect = 4e-53 Identities = 207/263 (79%), Gaps = 0/263 (0%) Strand=Plus/Minus Query 116655 AGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACGAGCGACT 116714 |||||||||| || |||||||| || |||||||| ||||| || ||||||| || |||| Sbjct 2197841 AGGCCGAGGCATCTTTCTGGACGGTAGAGGAGGTAGACCTCTCGAAGGACATGAAGGACT 2197782 Query 116715 GGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTTTTCGCCG 116774 ||||| ||||| | ||| || || |||||| ||||||||| || || ||||||| Sbjct 2197781 GGGAGTCGTTGAAACCGAGCGAACGTCACTTCATCTCGCACGTGCTCGCTTTCTTCGCCG 2197722 Query 116775 CCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCGTTTCGCTCAGGAGGTGCAGGTGG 116834 | ||||| ||||||||||||||||||||||| || ||| ||||| ||||||||| Sbjct 2197721 CATCGGACGGAATCGTCAACGAGAATCTGGTCGAACGATTCAGCCAGGAAGTGCAGGTGA 2197662 Query 116835 CCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGT 116894 |||| ||||| |||||||| || || |||||||| ||||| ||||| ||| || |||| Sbjct 2197661 CCGAAGCGCGCTGCTTCTATGGTTTCCAGATCGCGATGGAAAACGTCCACAGCGAGATGT 2197602 Query 116895 ATTCGACCCTCATCGACACGTAC 116917 | || || |||||||||||| Sbjct 2197601 ACTCCCTGCTGATCGACACGTAC 2197579 >seq9240 Length=943838 Score = 143 bits (158), Expect = 3e-29 Identities = 163/219 (74%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| ||||| |||||||| || ||||| ||| | || ||||| || Sbjct 630586 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 630527 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 | || | | | | | |||| || || | ||||| ||||||||||| ||||| Sbjct 630526 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 630467 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| ||||| |||||||| || | ||||| || ||||||| Sbjct 630466 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACGCTGTCCGACTAC 630407 Query 40867 AACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGC 40905 ||||| ||||||||| | || || ||||| ||| ||||| Sbjct 630406 AACATTCAGAAGGAGTCGACCCTCCATCTGGTGCTGCGC 630368 >seq9325 Length=2359367 Score = 120 bits (132), Expect = 3e-22 Identities = 144/193 (75%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 |||||| || ||||| || ||||| || ||||| |||||||| |||| ||||| | | Sbjct 260903 AATGCAGATTTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTCGAGGTCGAGCCTTC 260962 Query 40749 CGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | | | |||| |||||| || || | ||||| ||||| || ||| | || | Sbjct 260963 GGACACCATCGAGAACG-TCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCCCCAGATC 261021 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || | |||| ||| || || |||||||| |||| || || || |||||||| Sbjct 261022 AGCAGCGTTTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACA 261081 Query 40868 ACATCCAGAAGGA 40880 ||||||||||||| Sbjct 261082 ACATCCAGAAGGA 261094 >seq8738 Length=1280009 Score = 113 bits (124), Expect = 5e-20 Identities = 153/211 (73%), Gaps = 2/211 (1%) Strand=Plus/Minus Query 40689 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCAC 40748 ||||||||| ||||| || || || || || || |||||||| | || || || | | Sbjct 1177434 AATGCAAATTTTCGTCAAGACCCTGACTGGAAAGACCATCACGTTGGAGGTTGAGCCTTC 1177375 Query 40749 CGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACC 40807 |||| | || || | | |||| || |||| ||||| ||||| ||||| | || | Sbjct 1177374 GGACACGATTGAGAATG-TGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGATC 1177316 Query 40808 AGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 40867 |||| || ||||||| || ||||| |||||||| || | || ||||| || |||| Sbjct 1177315 AGCAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTTTCGGATTACA 1177256 Query 40868 ACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||| | || || ||||| || Sbjct 1177255 ACATCCAGAAGGAGTCTACTCTCCATCTGGT 1177225 Score = 107 bits (118), Expect = 2e-18 Identities = 153/213 (72%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || ||||| || |||||||| | || || || | Sbjct 1177664 AAGATGCAGATTTTCGTCAAGACCCTTACGGGAAAGACCATCACGTTGGAGGTGGAGCCT 1177605 Query 40747 ACCGACA-GCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 | |||| | || || | | |||| || |||| ||||| ||||| ||||| | || Sbjct 1177604 TCGGACACGATTGAGAATG-TGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGA 1177546 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 ||||| || ||||||| || ||||| |||||||| || | || || || || || Sbjct 1177545 TCAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCGGATTA 1177486 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||||||| | || || ||||| || Sbjct 1177485 CAACATCCAGAAGGAGTCTACTCTCCATCTGGT 1177453 >seq8899 Length=3132144 Score = 104 bits (114), Expect = 2e-17 Identities = 155/220 (70%), Gaps = 0/220 (0%) Strand=Plus/Minus Query 40685 GAAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAG 40744 |||| ||||| || ||||| ||||| ||||| ||||| ||||||||| | || ||||| Sbjct 384684 GAAAGATGCAGATTTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGC 384625 Query 40745 CCACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGG 40804 | | |||| | | | | |||| ||||||| || || || || || || | | Sbjct 384624 CGTCGGACACGATCGAGAATGTGAAGGCGAAAATTCAGGATAAGGAAGGAATTCCGCCAG 384565 Query 40805 ACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACT 40864 | || || || || |||| ||| || || |||||||| || | || || || |||| Sbjct 384564 ATCAACAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGTACGCTTTCGGACT 384505 Query 40865 ACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCG 40904 ||||||| ||||||||| | || || || || || |||| Sbjct 384504 ACAACATTCAGAAGGAGTCGACCCTTCACCTGGTTCTGCG 384465 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515157425217920