Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_002169.1 Length=135611 Score E Sequences producing significant alignments: (Bits) Value seq9207 232 6e-56 seq9325 131 1e-25 seq9240 123 2e-23 seq8899 116 3e-21 seq8738 111 1e-19 >seq9207 Length=1443628 Score = 232 bits (256), Expect = 6e-56 Identities = 759/1161 (65%), Gaps = 44/1161 (4%) Strand=Plus/Minus Query 132864 GCGACGGTTTCGAC--GTCGACGGTAAACTTTGTGGCCTGAGCGGCGGGTTTTGTGCGCA 132921 |||| ||||||| ||| || ||||||| | || | |||| || || ||||||| Sbjct 1179178 GCGATAGTTTCGATTTGTCCACCGTAAACTGGATCGCGTTCACGGCCGGCTTGGTGCGCA 1179119 Query 132922 AATAATACATGCCCGTTTTCAGTTTTTTCTCCCACGCGTAAAAGTGTATGCTCGACACCA 132981 ||| ||||||||||| ||||| ||| ||| |||| ||||| || || || | Sbjct 1179118 GATAGTACATGCCCGTCTTCAGGCCCATCTTCCAGCCGTAGAAGTGAATCGACGTCAGCT 1179059 Query 132982 CCGAGTAAGTGGGTTCGGCGACAAATAAATTCAGCGATTGACTCTGATCTATGAAAGGAG 133041 ||| | |||||||| || | || | ||| || |||||| ||||| | | Sbjct 1179058 TGCCGTAGTTCGGTTCGGCCACGTGAATGTTGAACGACTGGGACTGATCGATGAACGCAC 1178999 Query 133042 CACGGTCGGCGGCCATGTTTATTATACACTTT----GATTTGATCTCCCATGCCGTCTTG 133097 | ||||| |||||||| || || || ||| ||| |||||||| |||||||| Sbjct 1178998 CCCGGTCCGCGGCCATTTTGATGC-ACGTTTTCACCGAT---ATCTCCCACACCGTCTTG 1178943 Query 133098 AAGAGATTCTTGACATGCTGTGGTATTTCGTCAATGTTCTGCACGGACCCGTTTTCGGCC 133157 | || | || ||||| || ||||| || || ||| | || ||||| | || Sbjct 1178942 TACAGGTCGCGGATGTGCTGCGGAATTTCCTCGATCCGCTGTATCGAACCGTTGTGCGCA 1178883 Query 133158 AAAATCTTGTTGCGCAATTCCGGAGTGTAAATGTCGAGATCGATTAGCGCTTTGACGAGA 133217 | || | ||| || || | | | | |||| ||| | || | | | ||| Sbjct 1178882 AGGATTTGGTTCTTCATATCGTCATCCCACAGGCCGAGTTCGGTCAGATCCTGCAGCAGA 1178823 Query 133218 TACTGGTTGACCACTTGAAACTCGCCGGCGAGAACGCGTCTGAGATATACATTCGACGTG 133277 | ||||||||||| || |||||||| | || ||||| | || || ||||| ||| Sbjct 1178822 TGGTGGTTGACCACCTGGAACTCGCCCGACAGCACGCGCCGATTGTAGACGTTCGAAGTG 1178763 Query 133278 AACGGTTCGAAAGATTCGTTGTTGCCGAGTATCTGCGCCGTCGTCGCCGTGGGCATGTAC 133337 |||| ||||| || ||||||||||| || || || ||||| | || || ||||| Sbjct 1178762 TACGGCTCGAACGACTCGTTGTTGCCCAGAATTTGGGCCGTGGAGGCGGTCGGCATCGGT 1178703 Query 133338 GCCACCAACAAAGAGTTTCTTACGCCGTACTTGTTTATGTTGCACTGCAATTCGTTCCAG 133397 |||| || | || || | | || | |||| || || || || ||| |||| Sbjct 1178702 GCCAGCAGGAGCGAATTCCGGATACCATGCTTGGCAATCTTTTCCTTCAGCTCGGCCCAG 1178643 Query 133398 TCCCACAGATT-GTTGGAATGATAGACGCCGTTCTCGTCGTCGTAGTTGTGAAAATGCAA 133456 | |||||| | ||||| | | | || | | | |||||| | ||| Sbjct 1178642 TTCCACAGGTCCGTTGGGGTCTT---CTCC---CACAT-GTCGTACT---------GCAG 1178599 Query 133457 AATACCCCTGCTCACCGGACTGTCCGTGTACGATTCATAGGGTCCGTTGATTTTGGCCAG 133516 || ||| |||||||||||| | || ||||| ||| || || |||| | ||||| Sbjct 1178598 GATTCCCTTGCTCACCGGACAGCCCTCGTACGTTTCGTACGGACCGTCGCGGGCGGCCAA 1178539 Query 133517 CTCGCAGCTAGCCTCCAAAGCGGCAAAGTAAATGGTTTCCGCGATTGAATAGTTGACGAA 133576 ||| ||||||||||||| |||| || |||| ||||| || ||| | ||| | | Sbjct 1178538 CTCACAGCTAGCCTCCAGAGCGCCATAGTAGATGGTCTCAAAGATCTGCTGGTTCA-GCT 1178480 Query 133577 CCTG-GCATCGTCGCTATCGTAGGCGATGTCG-AGAAGAACAAACGCGTCGGCCAAACCC 133634 || || || || || ||||| | |||| || | |||| ||||| ||||||| ||| Sbjct 1178479 TTTGTGCTTCCTCACTTTCGTACG-GATGGCGCATGAGAATGAACGCATCGGCCATTCCC 1178421 Query 133635 TGTATGCCGACGCCGATGGGTCGATGTTTTTTATTGCTCCTCTCCGACTCGGCCGTGGGA 133694 || | ||||| ||||| ||||| || | ||| | || || ||| | | || Sbjct 1178420 TGCACGCCGATACCGATAGGTCGGTGGCGCATGTTGGAACGCTTCGCCTCCGGCACCGGG 1178361 Query 133695 TAGTGGTTGACGTCGATGATCTTGTTGAGATTGCGGACGATAATTTTAGTCAAATGTTTC 133754 |||| ||||| ||||||||| ||||| || ||||| || || || | | | ||| Sbjct 1178360 TAGTAGTTGATGTCGATGATTTTGTTCAGGTTGCGCGTGACGATCTTGGCGACCTCCTTC 1178301 Query 133755 AGCAAAACATAGTCAAATGTCTTGGCG--TCGACGTCGACGCACTTGTTGACGGCAATAC 133812 ||| || |||| | || ||| || | || || || |||| | ||||| Sbjct 1178300 AGCTTCACGAAGTCGTACGT----GCGATCCGGCCTC-ACAAACATGTTCAGCGCAATCG 1178246 Query 133813 TGGCTAGATTACAAACGGCCGTCTCGTTC-TCGTCGCAATACTGGACGATCTCGGCGCAG 133871 || ||||| || || || | |||| | ||| || | |||| ||||||||| | ||| Sbjct 1178245 ACGCCAGATTGCACACCGCAATTTCGTCCTTCGACG-AGTACTCGACGATCTCCGTGCAC 1178187 Query 133872 AGGTTGCTGCATTTGATGGTGCCCAAAtttttttGATTGCTAAAGTTATTGCAATGATCC 133931 ||||| ||| ||||| ||||||| || | || ||||| ||||| |||| Sbjct 1178186 AGGTTCGAGCACTTGATCGTGCCCACGTTCTGCTGGTTGCTCTTCCGGTTGCACGCATCC 1178127 Query 133932 TTGTATAGCATGTACGGCCCGCCGGTTTCGACGTTGGTCTCGACGATAAATCTAA--ACA 133989 ||||| |||||||||||| |||| || ||||| | | ||||| ||| | || ||| Sbjct 1178126 TTGTAGAGCATGTACGGCACGCCCGTCTCGACCTGCGACTCGATGAT--CGCGAACCACA 1178069 Query 133990 AGTCTCTCGCCTTCACCTGCC 134010 || |||||||||||||| Sbjct 1178068 GATCCTGCGCCTTCACCTGCC 1178048 >seq9325 Length=2359367 Score = 131 bits (144), Expect = 1e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 118512 CCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTC 118571 |||||||| | | | |||||||| | || || || || || |||||||| ||| | Sbjct 261130 CCTCCGCGAAGACGAAGAACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGAC 261071 Query 118572 ATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGT 118631 | ||| || ||||| ||||| ||||||||| |||| | |||||||||||| || || Sbjct 261070 AGAGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGA 261011 Query 118632 ATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACC 118691 || ||||||||||| || || || || | |||| |||||||| ||||||| Sbjct 261010 ATACCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCCGAAGGCTCGACC 260951 Query 118692 TCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| || | || ||||| ||||| || || || ||||||||||| Sbjct 260950 TCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAAATCTGCAT 260904 >seq9240 Length=943838 Score = 123 bits (136), Expect = 2e-23 Identities = 155/213 (73%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 118526 CAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATC 118585 || ||||| |||| || ||||| || ||||||||||| ||| || ||||| ||| Sbjct 630371 CAGCACCAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTGCGTCCATC 630430 Query 118586 CTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTC 118645 ||| ||||| || || ||| |||| ||||||||||| || || || |||||||||||||| Sbjct 630431 CTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTC 630490 Query 118646 TGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGT 118705 || || || || | |||| || |||| | ||||||||| | ||| | || Sbjct 630491 CTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGT 630550 Query 118706 TTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || || || || ||||| || || |||||||| Sbjct 630551 CTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 630583 >seq8899 Length=3132144 Score = 116 bits (128), Expect = 3e-21 Identities = 163/229 (71%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 118510 TACCTCCGCGTAATCTCAACACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGC 118569 |||| || || | || || |||| ||| | || ||||| || ||||||||||| || Sbjct 384451 TACCACCACGAAGTCGCAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCG 384510 Query 118570 TCATAGTGCGCGTATCCTCGAGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAG 118629 | || || |||||| ||||| || || ||| |||| |||||||| ||||| || | Sbjct 384511 AAAGCGTACGGCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGTTGATCTGGCG 384570 Query 118630 GTATGCCCTCCTTGTCTGTAATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGA 118689 | || || ||||| || |||||| || || | |||| ||||||| ||||| Sbjct 384571 GAATTCCTTCCTTATCCTGAATTTTCGCCTTCACATTCTCGATCGTGTCCGACGGCTCGA 384630 Query 118690 CCTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||| | ||| | || ||||| || || ||||| || ||||||||||| Sbjct 384631 CCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACGAAAATCTGCAT 384679 >seq8738 Length=1280009 Score = 111 bits (122), Expect = 1e-19 Identities = 162/227 (71%), Gaps = 3/227 (1%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| |||| |||||||| || || ||||||||||| | ||| || ||| || Sbjct 1177453 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCCGAAAGAGTACGGCCATCTTCC 1177512 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||||||||||||||| ||||| || ||||||||||| | Sbjct 1177513 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGA 1177572 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||||||| ||| ||||| | || | || || Sbjct 1177573 ATCTTGGCCTTCACATTCTCAATCGTGTCCGAAGGCTCCACCTCCAACGTGATGGTCTTT 1177632 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCATGGCTT-ATTCTATTACTC 118755 || || || || || || ||||||||||| ||| ||||| ||| || Sbjct 1177633 CCCGTAAGGGTCTTGACGAAAATCTGCAT--CTTGATTCTGTTAATC 1177677 Score = 102 bits (112), Expect = 7e-17 Identities = 148/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||| |||| |||||||| || || ||||||||||| | || || ||| || Sbjct 1177225 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCATCTTCC 1177284 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| || || || ||||||||||||||||||| ||||| || ||||||||||| | Sbjct 1177285 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGA 1177344 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 || || || || | || | ||||||| ||| ||||| | || | || || Sbjct 1177345 ATCTTGGCCTTCACATTCTCAATCGTGTCCGAAGGCTCAACCTCCAACGTGATGGTCTTT 1177404 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 || ||||| || || || ||||| ||||| Sbjct 1177405 CCAGTCAGGGTCTTGACGAAAATTTGCAT 1177433 Score = 89.7 bits (98), Expect = 4e-13 Identities = 145/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 118530 ACCAAGTGGATTGTAGACTCTTTTTGAATGTTGTAATCGCTCATAGTGCGCGTATCCTCG 118589 |||||||| || || || | | || |||||||| ||| || | ||| ||| || Sbjct 1179136 ACCAAGTGCATCGTTGATCCGTGCTGGATGTTGTAGTCGGAAATGATCCGCCCATCTTCA 1179195 Query 118590 AGCTGTTTTCCAGCGTAGATGAGACGCTGCTGATCGGGAGGTATGCCCTCCTTGTCTGTA 118649 ||||| ||||| ||| |||||| ||||||||| || || | ||| ||||| ||| Sbjct 1179196 AGCTGCTTTCCCGCGAAGATGATACGCTGCTGGTCCGGTGCTATACCCTCTCGCTCTTCG 1179255 Query 118650 ATTTTTTGTTTAACCTGTTCGACGGTGTCCGTGCTCTCGACCTCGACGGTCACCGTTTTG 118709 ||||| ||| | | ||| || || | | | |||| || | || | ||| ||| Sbjct 1179256 ATTTTGCTTTTTATATCCAAGACCGTCTCGGAGGCCACGACGTCTAGCGTGATCGTCTTG 1179315 Query 118710 CCGGTCAGAGTTTTTACAAAAATCTGCAT 118738 |||||||| || || |||||||| ||||| Sbjct 1179316 CCGGTCAGTGTCTTCACAAAAATTTGCAT 1179344 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 433779684141664