Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq9233 102 9e-17 seq9175 102 9e-17 seq8743 102 9e-17 seq8679 102 9e-17 seq9245 98.7 1e-15 seq8994 98.7 1e-15 seq9240 96.9 4e-15 seq9210 96.9 4e-15 seq8936 96.9 4e-15 seq1640 96.9 4e-15 seq8778 95.1 1e-14 seq8899 82.4 9e-11 >seq9233 Length=3601930 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 548863 TTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 548922 Query 60123 CTATACTACCGAGGAT 60138 |||||||| ||||||| Sbjct 548923 CTATACTATCGAGGAT 548938 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 550102 TTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 550161 Query 60123 CTATACTACCGAGGAT 60138 |||||||| ||||||| Sbjct 550162 CTATACTATCGAGGAT 550177 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 |||||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 551275 TTTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 551334 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 551335 ACTATACTATCGAGGA 551350 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 548396 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 548455 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 548456 ATACTATCGAGGA 548468 Score = 93.3 bits (102), Expect = 5e-14 Identities = 65/74 (88%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| || |||||||||||||||||| ||||| ||||| Sbjct 550811 TTCTCCCCGACGGGGAATCGAACCCCGGCCTCCCGCGTGACAGGCGGGGATACTGACCAC 550870 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 550871 TATACTATCGAGGA 550884 >seq9175 Length=308091 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 119309 TTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 119368 Query 60123 CTATACTACCGAGGAT 60138 |||||||| ||||||| Sbjct 119369 CTATACTATCGAGGAT 119384 >seq8743 Length=814231 Score = 102 bits (112), Expect = 9e-17 Identities = 68/76 (89%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 ||||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 132547 TTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 132606 Query 60123 CTATACTACCGAGGAT 60138 |||||||| ||||||| Sbjct 132607 CTATACTATCGAGGAT 132622 >seq8679 Length=336329 Score = 102 bits (112), Expect = 9e-17 Identities = 75/86 (87%), Gaps = 1/86 (1%) Strand=Plus/Plus Query 60054 ATGAAAAAT-TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112 || |||| | ||||||| || | ||||||||||||| ||||||||||||||||||||| Sbjct 62472 ATAAAAAGTATTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 62531 Query 60113 ATACTCACCACTATACTACCGAGGAT 60138 ||||| |||||||||||| ||||||| Sbjct 62532 ATACTGACCACTATACTATCGAGGAT 62557 >seq9245 Length=1646812 Score = 98.7 bits (108), Expect = 1e-15 Identities = 71/82 (87%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116 || || || |||| || | ||||||||||||| ||||||||||||||||||||| |||| Sbjct 255706 AATAACTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 255647 Query 60117 TCACCACTATACTACCGAGGAT 60138 | |||||||||||| ||||||| Sbjct 255646 TGACCACTATACTATCGAGGAT 255625 >seq8994 Length=320926 Score = 98.7 bits (108), Expect = 1e-15 Identities = 66/74 (89%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123 |||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||| Sbjct 247405 TTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 247464 Query 60124 TATACTACCGAGGA 60137 ||||||| |||||| Sbjct 247465 TATACTATCGAGGA 247478 >seq9240 Length=943838 Score = 96.9 bits (106), Expect = 4e-15 Identities = 152/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028 |||| ||||| ||| | || |||||| ||||| ||||| || | ||| || || | Sbjct 630369 CGCAGCACCAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTGCGTCCA 630428 Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088 || || |||||||| || ||||| || || ||||||||||| | ||| | || ||||||| Sbjct 630429 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTG 630488 Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148 ||| ||| || || | || | | ||| || | || || || | || ||| Sbjct 630489 TCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATG 630548 Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186 || || ||||| || || || || ||||| ||||| || Sbjct 630549 GTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 630586 >seq9210 Length=250497 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121 || ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||| Sbjct 49909 TTCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 49850 Query 60122 ACTATACTACCGAGGA 60137 ||||||||| |||||| Sbjct 49849 ACTATACTATCGAGGA 49834 Score = 95.1 bits (104), Expect = 1e-14 Identities = 66/75 (88%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 51658 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 51599 Query 60123 CTATACTACCGAGGA 60137 |||||||| |||||| Sbjct 51598 CTATACTATCGAGGA 51584 >seq8936 Length=1869526 Score = 96.9 bits (106), Expect = 4e-15 Identities = 65/73 (89%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124 ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||| Sbjct 385878 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 385819 Query 60125 ATACTACCGAGGA 60137 |||||| |||||| Sbjct 385818 ATACTATCGAGGA 385806 Score = 87.8 bits (96), Expect = 2e-12 Identities = 60/68 (88%), Gaps = 0/68 (0%) Strand=Plus/Minus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 1086454 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1086395 Query 60126 TACTACCG 60133 ||||| || Sbjct 1086394 TACTATCG 1086387 >seq1640 Length=1046 Score = 96.9 bits (106), Expect = 4e-15 Identities = 67/76 (88%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122 || |||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||| Sbjct 459 TTACTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 518 Query 60123 CTATACTACCGAGGAT 60138 |||||||| ||||||| Sbjct 519 CTATACTATCGAGGAT 534 >seq8778 Length=62753 Score = 95.1 bits (104), Expect = 1e-14 Identities = 64/72 (89%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125 |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||| Sbjct 61927 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 61986 Query 60126 TACTACCGAGGA 60137 ||||| |||||| Sbjct 61987 TACTATCGAGGA 61998 >seq8899 Length=3132144 Score = 82.4 bits (90), Expect = 9e-11 Identities = 138/197 (70%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || | || || || | || || ||||||||||| ||||| Sbjct 384488 CTCCTTCTGAATGTTGTAGTCCGAAAGCGTACGGCCATCCTCCAGCTGCTTACCGGCGAA 384547 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || ||||| || || | ||| | | ||||| ||| ||| |||| | || | Sbjct 384548 GATCAGACGCTGTTGATCTGGCGGAATTCCTTCCTTATCC-TGAATTTTCGCCTTCACAT 384606 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 || | | |||||| || || || || | |||||||| ||||| || || || || | Sbjct 384607 TCTCGATCGTGTCCGACGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTCA 384666 Query 43171 CAAAGATTTGCATTTTT 43187 | || || ||||| ||| Sbjct 384667 CGAAAATCTGCATCTTT 384683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571749039069760