Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14]
9,592 sequences; 220,777,669 total letters
Query= NC_002331.1
Length=178733
Score E
Sequences producing significant alignments: (Bits) Value
seq9233 102 9e-17
seq9175 102 9e-17
seq8743 102 9e-17
seq8679 102 9e-17
seq9245 98.7 1e-15
seq8994 98.7 1e-15
seq9240 96.9 4e-15
seq9210 96.9 4e-15
seq8936 96.9 4e-15
seq1640 96.9 4e-15
seq8778 95.1 1e-14
seq8899 82.4 9e-11
>seq9233
Length=3601930
Score = 102 bits (112), Expect = 9e-17
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
||||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct 548863 TTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 548922
Query 60123 CTATACTACCGAGGAT 60138
|||||||| |||||||
Sbjct 548923 CTATACTATCGAGGAT 548938
Score = 102 bits (112), Expect = 9e-17
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
||||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct 550102 TTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 550161
Query 60123 CTATACTACCGAGGAT 60138
|||||||| |||||||
Sbjct 550162 CTATACTATCGAGGAT 550177
Score = 102 bits (112), Expect = 9e-17
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
|||||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 551275 TTTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 551334
Query 60122 ACTATACTACCGAGGA 60137
||||||||| ||||||
Sbjct 551335 ACTATACTATCGAGGA 551350
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Plus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 548396 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 548455
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 548456 ATACTATCGAGGA 548468
Score = 93.3 bits (102), Expect = 5e-14
Identities = 65/74 (88%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| || | ||||||||||||| || |||||||||||||||||| ||||| |||||
Sbjct 550811 TTCTCCCCGACGGGGAATCGAACCCCGGCCTCCCGCGTGACAGGCGGGGATACTGACCAC 550870
Query 60124 TATACTACCGAGGA 60137
||||||| ||||||
Sbjct 550871 TATACTATCGAGGA 550884
>seq9175
Length=308091
Score = 102 bits (112), Expect = 9e-17
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
||||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct 119309 TTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 119368
Query 60123 CTATACTACCGAGGAT 60138
|||||||| |||||||
Sbjct 119369 CTATACTATCGAGGAT 119384
>seq8743
Length=814231
Score = 102 bits (112), Expect = 9e-17
Identities = 68/76 (89%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
||||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct 132547 TTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 132606
Query 60123 CTATACTACCGAGGAT 60138
|||||||| |||||||
Sbjct 132607 CTATACTATCGAGGAT 132622
>seq8679
Length=336329
Score = 102 bits (112), Expect = 9e-17
Identities = 75/86 (87%), Gaps = 1/86 (1%)
Strand=Plus/Plus
Query 60054 ATGAAAAAT-TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGAC 60112
|| |||| | ||||||| || | ||||||||||||| |||||||||||||||||||||
Sbjct 62472 ATAAAAAGTATTTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGG 62531
Query 60113 ATACTCACCACTATACTACCGAGGAT 60138
||||| |||||||||||| |||||||
Sbjct 62532 ATACTGACCACTATACTATCGAGGAT 62557
>seq9245
Length=1646812
Score = 98.7 bits (108), Expect = 1e-15
Identities = 71/82 (87%), Gaps = 0/82 (0%)
Strand=Plus/Minus
Query 60057 AAAAATTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATAC 60116
|| || || |||| || | ||||||||||||| ||||||||||||||||||||| ||||
Sbjct 255706 AATAACTTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATAC 255647
Query 60117 TCACCACTATACTACCGAGGAT 60138
| |||||||||||| |||||||
Sbjct 255646 TGACCACTATACTATCGAGGAT 255625
>seq8994
Length=320926
Score = 98.7 bits (108), Expect = 1e-15
Identities = 66/74 (89%), Gaps = 0/74 (0%)
Strand=Plus/Plus
Query 60064 TTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCAC 60123
|||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||
Sbjct 247405 TTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCAC 247464
Query 60124 TATACTACCGAGGA 60137
||||||| ||||||
Sbjct 247465 TATACTATCGAGGA 247478
>seq9240
Length=943838
Score = 96.9 bits (106), Expect = 4e-15
Identities = 152/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 42969 CGCAACACCAAATGCAATGTGCTCTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCG 43028
|||| ||||| ||| | || |||||| ||||| ||||| || | ||| || || |
Sbjct 630369 CGCAGCACCAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTGCGTCCA 630428
Query 43029 TCATCTAGCTGCTTACCAGCGAATATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 43088
|| || |||||||| || ||||| || || ||||||||||| | ||| | || |||||||
Sbjct 630429 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTG 630488
Query 43089 TCCATGATTTTTTGTTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATG 43148
||| ||| || || | || | | ||| || | || || || | || |||
Sbjct 630489 TCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATG 630548
Query 43149 GTTTTGCCCGTTAGCGTCTTTACAAAGATTTGCATTTT 43186
|| || ||||| || || || || ||||| ||||| ||
Sbjct 630549 GTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 630586
>seq9210
Length=250497
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Minus
Query 60062 TTTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACC 60121
|| ||||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||
Sbjct 49909 TTCTCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACC 49850
Query 60122 ACTATACTACCGAGGA 60137
||||||||| ||||||
Sbjct 49849 ACTATACTATCGAGGA 49834
Score = 95.1 bits (104), Expect = 1e-14
Identities = 66/75 (88%), Gaps = 0/75 (0%)
Strand=Plus/Minus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
|| |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct 51658 TTCCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 51599
Query 60123 CTATACTACCGAGGA 60137
|||||||| ||||||
Sbjct 51598 CTATACTATCGAGGA 51584
>seq8936
Length=1869526
Score = 96.9 bits (106), Expect = 4e-15
Identities = 65/73 (89%), Gaps = 0/73 (0%)
Strand=Plus/Minus
Query 60065 TCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACT 60124
||||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||||
Sbjct 385878 TCTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACT 385819
Query 60125 ATACTACCGAGGA 60137
|||||| ||||||
Sbjct 385818 ATACTATCGAGGA 385806
Score = 87.8 bits (96), Expect = 2e-12
Identities = 60/68 (88%), Gaps = 0/68 (0%)
Strand=Plus/Minus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 1086454 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 1086395
Query 60126 TACTACCG 60133
||||| ||
Sbjct 1086394 TACTATCG 1086387
>seq1640
Length=1046
Score = 96.9 bits (106), Expect = 4e-15
Identities = 67/76 (88%), Gaps = 0/76 (0%)
Strand=Plus/Plus
Query 60063 TTTCTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCA 60122
|| |||| || | ||||||||||||| ||||||||||||||||||||| ||||| ||||
Sbjct 459 TTACTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCA 518
Query 60123 CTATACTACCGAGGAT 60138
|||||||| |||||||
Sbjct 519 CTATACTATCGAGGAT 534
>seq8778
Length=62753
Score = 95.1 bits (104), Expect = 1e-14
Identities = 64/72 (89%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 60066 CTCCTCGGCAGGGAATCGAACCCTGGTCTCCCGCGTGACAGGCGGACATACTCACCACTA 60125
|||| || | ||||||||||||| ||||||||||||||||||||| ||||| |||||||
Sbjct 61927 CTCCCCGACGGGGAATCGAACCCCGGTCTCCCGCGTGACAGGCGGGGATACTGACCACTA 61986
Query 60126 TACTACCGAGGA 60137
||||| ||||||
Sbjct 61987 TACTATCGAGGA 61998
>seq8899
Length=3132144
Score = 82.4 bits (90), Expect = 9e-11
Identities = 138/197 (70%), Gaps = 2/197 (1%)
Strand=Plus/Plus
Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051
|||||| ||||| ||||| || | || || || | || || ||||||||||| |||||
Sbjct 384488 CTCCTTCTGAATGTTGTAGTCCGAAAGCGTACGGCCATCCTCCAGCTGCTTACCGGCGAA 384547
Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110
|| || ||||| || || | ||| | | ||||| ||| ||| |||| | || |
Sbjct 384548 GATCAGACGCTGTTGATCTGGCGGAATTCCTTCCTTATCC-TGAATTTTCGCCTTCACAT 384606
Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170
|| | | |||||| || || || || | |||||||| ||||| || || || || |
Sbjct 384607 TCTCGATCGTGTCCGACGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTCA 384666
Query 43171 CAAAGATTTGCATTTTT 43187
| || || ||||| |||
Sbjct 384667 CGAAAATCTGCATCTTT 384683
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 571749039069760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |