Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14]
9,592 sequences; 220,777,669 total letters
Query= NC_002816.1
Length=123500
Score E
Sequences producing significant alignments: (Bits) Value
seq9325 120 2e-22
seq9240 105 5e-18
seq8899 95.1 1e-14
seq8738 87.8 1e-12
>seq9325
Length=2359367
Score = 120 bits (132), Expect = 2e-22
Identities = 152/209 (73%), Gaps = 0/209 (0%)
Strand=Plus/Minus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||||||| || || |||||||| |||||||||||| ||| || |||| |||
Sbjct 261112 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTCC 261053
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || ||||| ||||| ||||| ||||| || || || || | |||||||||||||
Sbjct 261052 AGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTGG 260993
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
|| || ||| || | | | | ||||| | ||| ||||| | || || ||||||
Sbjct 260992 ATCTTAGCCTTGACGTTCTCGATGGTGTCCGAAGGCTCGACCTCGAGAGTGATGGTCTTG 260933
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCAT 45336
|| ||||| |||||||| || || |||||
Sbjct 260932 CCAGTCAGCGTCTTCACGAAAATCTGCAT 260904
>seq9240
Length=943838
Score = 105 bits (116), Expect = 5e-18
Identities = 141/196 (72%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
|||||||||||||||||||||| ||| ||| | || ||||| || || ||||||||
Sbjct 630392 CTCCTTCTGAATGTTGTAGTCGGACAGCGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAA 630451
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
|||| ||||| ||||| || || | |||||||||||| || || ||| ||
Sbjct 630452 GATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATT 630511
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | | | ||| ||| ||||| | |||||| ||||| ||||| || || || ||
Sbjct 630512 CTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGAC 630571
Query 45325 AAAGATTTGCATGTTG 45340
||||| ||||| |||
Sbjct 630572 GAAGATCTGCATCTTG 630587
>seq8899
Length=3132144
Score = 95.1 bits (104), Expect = 1e-14
Identities = 148/212 (70%), Gaps = 0/212 (0%)
Strand=Plus/Plus
Query 45128 ACCAAGTGCAGCGTGCTCTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCC 45187
|||| ||| || || ||||||||||||||||||||| || || | || |||
Sbjct 384471 ACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGCGTACGGCCATCCTCC 384530
Query 45188 AGTTGTTTTCCGGCGAATATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCA 45247
|| || || |||||||| |||| |||||||| || || || | || ||||| ||| |
Sbjct 384531 AGCTGCTTACCGGCGAAGATCAGACGCTGTTGATCTGGCGGAATTCCTTCCTTATCCTGA 384590
Query 45248 ATTTTTTGCTTAACCGCCGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTG 45307
||||| ||| || | | | ||||| ||| ||||| | ||| || ||||||
Sbjct 384591 ATTTTCGCCTTCACATTCTCGATCGTGTCCGACGGCTCGACCTCAAGGGTGATGGTCTTG 384650
Query 45308 CCCGTCAGAGTCTTCACAAAGATTTGCATGTT 45339
|| || || || ||||| || || ||||| ||
Sbjct 384651 CCAGTGAGGGTTTTCACGAAAATCTGCATCTT 384682
>seq8738
Length=1280009
Score = 87.8 bits (96), Expect = 1e-12
Identities = 137/196 (70%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| |||||||| || || || | || ||||| || || ||||| ||
Sbjct 1177470 CTCCTTCTGGATGTTGTAATCCGAAAGAGTACGGCCATCTTCCAGCTGCTTGCCGGCAAA 1177529
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
|| | ||||| || || ||||| | |||||||||||| ||| || ||| ||
Sbjct 1177530 GATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATT 1177589
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | | ||||| | ||||||||||| || || ||||| ||||| || ||||| ||
Sbjct 1177590 CTCAATCGTGTCCGAAGGCTCCACCTCCAACGTGATGGTCTTTCCCGTAAGGGTCTTGAC 1177649
Query 45325 AAAGATTTGCATGTTG 45340
|| || ||||| |||
Sbjct 1177650 GAAAATCTGCATCTTG 1177665
Score = 86.0 bits (94), Expect = 5e-12
Identities = 134/192 (70%), Gaps = 0/192 (0%)
Strand=Plus/Plus
Query 45145 CTCCTTCTGAATGTTGTAGTCGTTCAGTTGGCGATCGTCGTCCAGTTGTTTTCCGGCGAA 45204
||||||||| |||||||| || || || | || ||||| || || ||||| ||
Sbjct 1177242 CTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCATCTTCCAGCTGCTTGCCGGCAAA 1177301
Query 45205 TATCAACCGCTGTTGGTCGGGAGGCACACCCTCCTTGTCCGCAATTTTTTGCTTAACCGC 45264
|| | ||||| || || ||||| | |||||||||||| ||| || ||| ||
Sbjct 1177302 GATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATT 1177361
Query 45265 CGCCACGCTGTCCCCACCCTCCACCTCCACGGTAATCGTCTTGCCCGTCAGAGTCTTCAC 45324
| | | ||||| | ||| ||||||| || || ||||| || ||||| ||||| ||
Sbjct 1177362 CTCAATCGTGTCCGAAGGCTCAACCTCCAACGTGATGGTCTTTCCAGTCAGGGTCTTGAC 1177421
Query 45325 AAAGATTTGCAT 45336
|| ||||||||
Sbjct 1177422 GAAAATTTGCAT 1177433
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 395029014721432
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |