Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq9207 942 0.0 seq9254 183 3e-41 seq9240 104 2e-17 seq8738 100 3e-16 >seq9207 Length=1443628 Score = 942 bits (1044), Expect = 0.0 Identities = 1367/1931 (71%), Gaps = 15/1931 (1%) Strand=Plus/Minus Query 22106 TTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCCC 22165 |||||||| |||||||| || ||||| ||||||| |||||||| ||||| ||||||||| Sbjct 1179164 TTGTCCACCGTAAACTGGATCGCGTTCACGGCCGGCTTGGTGCGCAGATAGTACATGCCC 1179105 Query 22166 GTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGGC 22225 |||||||| ||||||||||| |||| || || |||||||||| || || || |||| Sbjct 1179104 GTCTTCAGGCCCATCTTCCAGCCGTAGAAGTGAATCGACGTCAGCTTGCCGTAGTTCGGT 1179045 Query 22226 AAGTCCATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGCGGCC 22285 | ||| || | ||||||||||| ||||||||| ||||| || || || |||||| Sbjct 1179044 TCGGCCACGTGAATGTTGAACGACTGGGACTGATCGATGAACGCACCCCGGTCCGCGGCC 1178985 Query 22286 ATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGATCTCT 22345 || || || | || || ||| || ||||| || ||||||||||| | | ||| | Sbjct 1178984 ATTTTGATGCACGTTTTCACCGATATCTCCCACACCGTCTTGTACAGGTCGCGGATGTGC 1178925 Query 22346 AACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTTAATC 22405 ||| || ||||||| ||| | || ||||| | | ||| || || || Sbjct 1178924 TGCGGAATTTCCTCGATCCGCTGTATCGAACCGTTGTGCGCAAGGATTTGGTTCTTCATA 1178865 Query 22406 GTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCACTTGA 22465 || | ||||| |||| |||||| ||| | | |||||| |||| ||||| || Sbjct 1178864 TCGTCATCCCACAGGCCGAGTTCGGTCAGATCCTGCAGCAGATGGTGGTTGACCACCTGG 1178805 Query 22466 AACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGATTCA 22525 |||||||| |||| ||||| || | ||| | ||| || ||| |||| ||||| || || Sbjct 1178804 AACTCGCCCGACAGCACGCGCCGATTGTAGACGTTCGAAGTGTACGGCTCGAACGACTCG 1178745 Query 22526 TTGTTTCCCAGTATCTGAGCGGTCGAAGCGGTCGGCATCGGCGCCAACAGTAGCGAGTTT 22585 ||||| ||||| || || || || || |||||||||||||| |||| ||| ||||| || Sbjct 1178744 TTGTTGCCCAGAATTTGGGCCGTGGAGGCGGTCGGCATCGGTGCCAGCAGGAGCGAATTC 1178685 Query 22586 CTCAAGCCGTGCTTTGAAATTTTACTCTTGAGCATCGACCAGTCCCACAGATCGGACGGC 22645 | | || ||||| | ||| || ||| ||| | ||||| |||||| || | || Sbjct 1178684 CGGATACCATGCTTGGCAATCTTTTCCTTCAGCTCGGCCCAGTTCCACAGGTCCGTTGGG 1178625 Query 22646 GTCACATTGTCCCACATATCGTATTGCAACACGCCGCGACTCGCCGGGCTGCCTTCGTAC 22705 ||| || |||||||| ||||| |||| | || ||| |||| | ||| |||||| Sbjct 1178624 GTC---TTCTCCCACATGTCGTACTGCAGGATTCCCTTGCTCACCGGACAGCCCTCGTAC 1178568 Query 22706 GTTTCGTACGGACCATATATCGCGGCAAGTTCGCAGCTCGCCTCCAACGCGCCGTAATAT 22765 |||||||||||||| | ||||| | || ||||| ||||||| ||||| || || Sbjct 1178567 GTTTCGTACGGACCGTCGCGGGCGGCCAACTCACAGCTAGCCTCCAGAGCGCCATAGTAG 1178508 Query 22766 ATAGTCTCGAAGATTTTCTTGTTCAATTCGGCGGCGGCGACGCTTTCGTACGGCATACGC 22825 || ||||| ||||| | || ||||| | || | | ||||||||||| ||| Sbjct 1178507 ATGGTCTCAAAGATCTGCTGGTTCAGCTTTTGTGCTTCCTCACTTTCGTACGGATGGCGC 1178448 Query 22826 ATCATCACGAACGCGTCCGCCATACCCTGAACGCCTATACCGATCGGTCGGTTTTTCAGA 22885 || | | |||||| || ||||| ||||| ||||| |||||||| ||||||| || Sbjct 1178447 ATGAGAATGAACGCATCGGCCATTCCCTGCACGCCGATACCGATAGGTCGGTGGCGCATG 1178388 Query 22886 TTCGACACTTTTGCCTCGGGCAAAGGATACCAATTCGAATCGATTGTTCTGTTCAAGTTT 22945 || || || ||||| |||| || || | || ||||| || |||||| ||| Sbjct 1178387 TTGGAACGCTTCGCCTCCGGCACCGGGTAGTAGTTGATGTCGATGATTTTGTTCAGGTTG 1178328 Query 22946 CTGGTCACAATTTTCGTTATNNNNNNNNNNNNNTCAAAGTCGTAAACGCCCGATTGTACA 23005 | || || || || | | | |||||||| || |||| | Sbjct 1178327 CGCGTGACGATCTTGGCGACCTCCTTCAGCTTCACGAAGTCGTA--CGTGCGATCCGGCC 1178270 Query 23006 --ACAAACTTGTTGACGGCGATCGAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACG 23063 |||||| |||| | || ||||| || |||||||| || || | ||||| || |||| Sbjct 1178269 TCACAAACATGTTCAGCGCAATCGACGCCAGATTGCACACCGCAATTTCGTCCTTCGACG 1178210 Query 23064 TGTACTCTACAATTTCGGTACATAGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGT 23123 |||||| || || || || || || || ||||| |||||||||| || ||||| Sbjct 1178209 AGTACTCGACGATCTCCGTGCACAGGTTCGAGCACTTGATCGTGCCCACGTTCTGCTGGT 1178150 Query 23124 TGCTTTTTCGATTGCACGAATCCTTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCG 23183 |||| || || ||||||| |||||||||||||||||||||| ||||||||||||||||| Sbjct 1178149 TGCTCTTCCGGTTGCACGCATCCTTGTAGAGCATGTACGGCACGCCCGTCTCGACCTGCG 1178090 Query 23184 ACTCGATGATCGCTCGCCACATAGTCTGAGCGTGAACACGTCGCACGTACCTGCCTTCTT 23243 ||||||||||||| ||||| | ||| || | || | || | | ||| ||||| | Sbjct 1178089 ACTCGATGATCGCGAACCACAGATCCTGCGCCTTCACCTGCCGGATGAACCGACCTTCCT 1178030 Query 23244 CCTCGTACTTTTGGTACAACGCGTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCG 23303 |||||| ||||| | ||||| || | || | | || | ||| ||||| Sbjct 1178029 TCTCGTAGCCCGTGTACAGCCGCTCAAACTCTTCGCCCCACGACTCCGACAGCCCGGGGC 1177970 Query 23304 ATTGCATCGGACACATGAGACTCCACATTGAGTCATTTTCAACGCGTCTCATAAAAAGAT 23363 | | ||||||||| || ||||||||| || || || || |||| || |||| Sbjct 1177969 AGTCGTGCGGACACATAAGGCTCCACATTTCGTTCGCCTCCACCCGCTTCATGAACAGAT 1177910 Query 23364 CCGGTATCCATAGAGCGTAGAACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCT 23423 |||| | ||| || |||||||||| || || || || |||||||| ||||| ||||| | Sbjct 1177909 CCGGCACCCACAGCGCGTAGAACATGTCACGCGCACGGACCTCCTCCTTGCCAGTGTTTT 1177850 Query 23424 TTTTCAAATCCAAAAAGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACG 23483 | |||| ||| | ||| || ||||| || ||||||||||||||||||| | ||| |||| Sbjct 1177849 TCTTCAGATCGAGAAACTCAAACACATCGCCATGCCACGGCTCGAGGTAGATGGCGAACG 1177790 Query 23484 CGCCCGGTCTCTTATTGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTA 23543 | || || | ||| ||||||||||| || || || ||||||||||||||||| || | | Sbjct 1177789 CACCGGGACGCTTGTTGCCGCCCTGGTCCACATACCGGGCCGTGTTGTTGTAGACACGCA 1177730 Query 23544 GCATCGGCACGAGACCGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTC 23603 ||||||| || | |||||||| ||| |||||| | || ||| || || | Sbjct 1177729 GCATCGGAACCAACCCGTTGGAGATACCGTTCGTGCCCGCAATGTACGTACCCTTCGCCC 1177670 Query 23604 GAACGTTGTGAACGTGGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTT 23663 | | | ||| |||| | ||| ||||||||| | || || || |||| ||||| || | Sbjct 1177669 GGATGCAGTGCACGTTCAGACCAATGCCTCCGGCGGACTTGGAGATCAGTGCGCACTGCT 1177610 Query 23664 TCAGAGTGTCGTAGATGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAG 23723 |||| |||||||| || |||||||| ||||| || ||| | | || || || | Sbjct 1177609 TCAGCGTGTCGTAAATTCCCTCGATACTGTCGTCCGACATCGTTAGGAGAAAGCAGGACG 1177550 Query 23724 ACATTTG----CGCTTTGGGCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAG 23779 ||| ||| |||| |||| || |||| |||| ||||| ||||||||||||| Sbjct 1177549 ACAGTTGGGGCCGCT----GCGTGGCCGCCGCAAACATGGTCGGCGAGGCGTGCGTAAAG 1177494 Query 23780 TATCCATTCGACATTAGATTGTACGTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATA 23839 |||| | ||| | | ||||||||| ||||| || ||||| |||||||| ||||| || Sbjct 1177493 TATCGCTCCGAAAGCAAATTGTACGTTTCGATTGCCGCATCGATGTCCTCGCCGTGGATC 1177434 Query 23840 CCGATGGCGACGCGCATCATCATGTATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTG 23899 |||||||| |||||||||| ||||| || |||| ||||| | ||| || || || Sbjct 1177433 CCGATGGCAACGCGCATCAGCATGTGCTGCGGTCGTTCGACGATCTTGCCCTTGATCTTC 1177374 Query 23900 AACAGATATGAACGTTGCATCGTTTTAAATCCAAAATAGTCATAGTTAAAGTCACGATCG 23959 | ||| || || |||| | |||||| || |||||||| | || |||||| |||||| Sbjct 1177373 AGCAGGTAGGACCGTTCGAGCGTTTTGAAGCCAAAATAATTGTACCCAAAGTCGCGATCG 1177314 Query 23960 TGCACTATGGCCGAATTCAAACGGTACGCATTGGCAGCGATGATGTTGTAATGAAAATTC 24019 | | |||||||| |||| |||| ||| ||||| |||||| ||||| || | | | Sbjct 1177313 TAGATGATGGCCGAGTTCAGCCGGTCCGCGTTGGCCATGATGATTTTGTAGTGCATTTCC 1177254 Query 24020 GATATCATCGG 24030 || | ||| || Sbjct 1177253 GAAAGCATGGG 1177243 >seq9254 Length=4138565 Score = 183 bits (202), Expect = 3e-41 Identities = 298/427 (70%), Gaps = 4/427 (1%) Strand=Plus/Minus Query 57879 CTGTTCAACGCGATCGAAACAATGCCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAA 57938 |||||||| || |||||||| | || | |||||||| || ||| || | || Sbjct 2197472 CTGTTCAATGCCATCGAAACGCTACCGTGTGTGAAGAAGAAGGCTGACTGGGCACTGAAC 2197413 Query 57939 TGGATAAAAAGCGCCACGGCCACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAA 57998 ||||| ||| | |||| |||| |||| | | ||||||| ||||||||||| Sbjct 2197412 TGGATTTCGAGCAAGAAAGCCAACTTCGGCGAGCGTGTTGTCGCGTTTGCCGCCGTCGAG 2197353 Query 57999 GGTATATTCTTTTCGGGCAGCTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATG 58058 || || ||||| ||||||||||| || || || ||| | ||||| || || |||||| Sbjct 2197352 GGAATTTTCTTCAGCGGCAGCTTTGCCGCTATCTTCTGGCTTAAGAAGCGAGGACTGATG 2197293 Query 58059 CCCGGCCTGACGTTTAGCAACGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTT 58118 || ||| |||| || |||||| |||| ||||| |||||||| | || ||| ||| Sbjct 2197292 CCAGGCTTGACCTTCTCGAACGAGCTGATTTCGCGTGACGAGGGCTTGCACTGTGACTTT 2197233 Query 58119 GCGTGCCTAATGTACTCTCACATTGTCAATAAACCGACGCGGGATCGCAT--CTTGGACA 58176 || ||||| |||| | || | || | || |||||||| || || | || | || Sbjct 2197232 GCTTGCCTTATGTTCAAATACCTGGTTCAAAAGCCGACGCGCGAGCGTGTGACTAG--CA 2197175 Query 58177 TTATCACCGAGGCGGTCGCGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCA 58236 | || ||| ||||| | |||||| | ||||| | ||| | || || || || | | Sbjct 2197174 TCATTCGCGATGCGGTGGTAATCGAACAGGAGTTCCTTACCAAGGCGCTGCCAGTCGATA 2197115 Query 58237 TGCTCGGTATGAACAATGATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTT 58296 |||| || |||||| ||| ||||||| ||||||| ||||| ||||||||| | || Sbjct 2197114 TGCTGGGCATGAACTGTGACCTGATGTCGCAGTACATCGAGTTCGTTGCCGACCGGCTGC 2197055 Query 58297 TGCTCGA 58303 || |||| Sbjct 2197054 TGGTCGA 2197048 Score = 138 bits (152), Expect = 1e-27 Identities = 191/267 (72%), Gaps = 8/267 (3%) Strand=Plus/Minus Query 57589 AGGCAGAAGCATCGTTTTGGACCGTCGAAGAAGTAGACCTGTCTAAGGATCTGAGCGATT 57648 |||| || ||||| || ||||| || || || |||||||| || ||||| ||| || | Sbjct 2197841 AGGCCGAGGCATCTTTCTGGACGGTAGAGGAGGTAGACCTCTCGAAGGACATGAAGGACT 2197782 Query 57649 GGGATTCCCTCAAAGAATCTGAGAGAA----ATTTTATTAAACACGTGTTGGCGTTTTTC 57704 |||| || | ||| | ||| ||| | || || |||||| | || || ||| Sbjct 2197781 GGGAGTCGTTGAAA----CCGAGCGAACGTCACTTCATCTCGCACGTGCTCGCTTTCTTC 2197726 Query 57705 GCCGCATCCGATGGTATTGTTAACGAGAATTTGGTCGAAAGATTTTCACAAGAAGTGCAA 57764 |||||||| || || || || ||||||||| |||||||| |||| || |||||||| Sbjct 2197725 GCCGCATCGGACGGAATCGTCAACGAGAATCTGGTCGAACGATTCAGCCAGGAAGTGCAG 2197666 Query 57765 GTGACGGAGGCGAGATGCTTTTACGGATTTCAAGTGGCCATTGAAAACGTGCATTCAGAA 57824 ||||| || ||| | ||||| || || || || | || || |||||||| || || Sbjct 2197665 GTGACCGAAGCGCGCTGCTTCTATGGTTTCCAGATCGCGATGGAAAACGTCCACAGCGAG 2197606 Query 57825 ATGTATTCGCTACTCATCGATACGTAC 57851 ||||| || || || ||||| |||||| Sbjct 2197605 ATGTACTCCCTGCTGATCGACACGTAC 2197579 >seq9240 Length=943838 Score = 104 bits (114), Expect = 2e-17 Identities = 154/216 (71%), Gaps = 2/216 (1%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| || ||||| || || || || || || || || ||| | || || || || Sbjct 630586 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 630527 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 || || | |||| | || || || || ||||||||| ||| | ||||| ||| Sbjct 630526 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 630467 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATG-ACTATGAGCGATTA 31368 ||||||||||| || ||||| ||||| ||| |||| || | | | || || ||| || Sbjct 630466 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGA-TGGACGCACGCTGTCCGACTA 630408 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||||| || || ||||| || |||||||| || Sbjct 630407 CAACATTCAGAAGGAGTCGACCCTCCATCTGGTGCT 630372 >seq8738 Length=1280009 Score = 100 bits (110), Expect = 3e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||||||||| ||||| ||||| || || || ||||| | || ||||| || || Sbjct 1177433 ATGCAAATTTTCGTCAAGACCCTGACTGGAAAGACCATCACGTTGGAGGTTGAGCCTTCG 1177374 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 |||| | || | || || | || ||||||||| || | || || || ||| Sbjct 1177373 GACACGATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGATCAG 1177314 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAAC 31372 |||||||| || || || ||||| ||| ||||||| || | ||||| ||| Sbjct 1177313 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTTTCGGATTACAAC 1177254 Query 31373 ATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGGT 31420 || || || || || ||||| |||||||| ||| | ||| | || ||| Sbjct 1177253 ATCCAGAAGGAGTCTACTCTCCATCTGGTCCTTCGTCTGCGCGGTGGT 1177206 Score = 93.3 bits (102), Expect = 4e-14 Identities = 163/236 (69%), Gaps = 1/236 (0%) Strand=Plus/Minus Query 31184 GAATCAAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTT 31243 ||||||| ||||| |||||||| ||||| || || || || || ||||| | || || Sbjct 1177669 GAATCAAG-ATGCAGATTTTCGTCAAGACCCTTACGGGAAAGACCATCACGTTGGAGGTG 1177611 Query 31244 GAACCGTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCG 31303 || || || |||| | || | || || | || ||||||||| || | || Sbjct 1177610 GAGCCTTCGGACACGATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCT 1177551 Query 31304 CCCGACCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGC 31363 || || ||||||||||| || || || ||||| ||| ||||||| ||| | Sbjct 1177550 CCAGATCAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCG 1177491 Query 31364 GATTATAACATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||||| ||||| || || || || ||||| |||||||| ||| | ||| | || || Sbjct 1177490 GATTACAACATCCAGAAGGAGTCTACTCTCCATCTGGTCCTTCGTCTGCGCGGTGG 1177435 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445712952608640