Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq9207 259 6e-64 >seq9207 Length=1443628 Score = 259 bits (286), Expect = 6e-64 Identities = 996/1555 (64%), Gaps = 41/1555 (3%) Strand=Plus/Minus Query 62370 AGGAGATGCGGGTTAACTACTTGGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTA 62429 || ||||| |||| || || ||||| || || |||| || | |||| |||| | || Sbjct 1178828 AGCAGATGGTGGTTGACCACCTGGAACTCGCCCGACAGCACGCGCCGATTGTAGACGTTC 1178769 Query 62430 CTGGTATACGGTTCCACCGACTCATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGC 62489 || ||||| || | |||||| || || |||| |||||| || || || || |||||| Sbjct 1178768 GAAGTGTACGGCTCGAACGACTCGTTGTTGCCCAGAATTTGGGCCGTGGAGGCGGTCGGC 1178709 Query 62490 ATAGGTGCCACCAATAAACTATTTCTAAGACCGTATGTTCTG--ATTTTATCTTTTAGAT 62547 || ||||||| || | ||| | | ||| ||| | | || || || || || | Sbjct 1178708 ATCGGTGCCAGCAGGAGCGAATTCCGGATACC--ATGCTTGGCAATCTTTTCCTTCAGCT 1178651 Query 62548 GTTCCCAATTCCAAAGATCCGACGG-------TACAACANNNNNNNNNNNATATTGTAGA 62600 |||| ||||| || |||| || | | ||| || || || Sbjct 1178650 CGGCCCAGTTCCACAGGTCCGTTGGGGTCTTCTCCCACATGTCG-------TACTGCAGG 1178598 Query 62601 ATACCGTTACTGGC-GTACGATCCTACATATGTATCATATGGTCCTTCCTTCTCAGCTAG 62659 || || || || | | || ||| | || || || || || || || | || | Sbjct 1178597 ATTCCCTTGCTCACCGGACAGCCCT-CGTACGTTTCGTACGGACCGTCGCGGGCGGCCAA 1178539 Query 62660 TTTACAACTCGCCTCTAATGCACCGTAATAAATGGTTTCAAAGATCTTCTTATTTAGATC 62719 | ||| || ||||| | || || || || ||||| |||||||||| || || || | Sbjct 1178538 CTCACAGCTAGCCTCCAGAGCGCCATAGTAGATGGTCTCAAAGATCTGCTGGTTCAGCTT 1178479 Query 62720 TTGTGCTTCCGGGCTATCAAATGGATAATTTAAGAGAATAAACGCGTCCGCTAATCCTTG 62779 |||||||||| || || | |||| | |||||| ||||| || || | ||| || Sbjct 1178478 TTGTGCTTCCTCACTTTCGTACGGATGGCGCATGAGAATGAACGCATCGGCCATTCCCTG 1178419 Query 62780 AACACCAATACCGATAGGTCTATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATA 62839 || || ||||||||||||| || | | | || || | || || || | || || Sbjct 1178418 CACGCCGATACCGATAGGTCGGTGGCGCATGTTGGAACGCTTCGCCTCCGGCACCGGGTA 1178359 Query 62840 ATAATTAATATCTATAATTTTATTGAGATTTC---TGACAATTACTTTGACCACATCCTT 62896 || || || || || ||||| || || || | |||| || ||| | || ||||| Sbjct 1178358 GTAGTTGATGTCGATGATTTTGTTCAGGTTGCGCGTGACGATC---TTGGCGACCTCCTT 1178302 Query 62897 CAGTTTGAGAAAATCAAATCGCCCATCTA---TTACAAACATGTTCAATGCAACAGATGC 62953 ||| || | || || | | ||| | ||||||||||||| |||| || || Sbjct 1178301 CAGCTTCACGAAGTCGTACGTGCGATCCGGCCTCACAAACATGTTCAGCGCAATCGACGC 1178242 Query 62954 CAGATTACACACGGCTACCTCATTAGCATC--CGCATATTGTATTATCTCAGTGCAAAGA 63011 |||||| ||||| || | || | | || || || | | ||||| ||||| || Sbjct 1178241 CAGATTGCACACCGCAATTTCGTC--CTTCGACGAGTACTCGACGATCTCCGTGCACAGG 1178184 Query 63012 TTACTACACTTGATAGTTCCTAAATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTA 63071 || |||||||| || || | || || || || ||||| ||| ||||||||||| Sbjct 1178183 TTCGAGCACTTGATCGTGCCCACGTTCTGCTGGTTGCTCTTCCGGTTGCACGCATCCTTG 1178124 Query 63072 TAAAGAATGAATGGAGTACCAGTTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACT 63131 || || ||| | || || || || | ||| || || || ||||| ||| | | Sbjct 1178123 TAGAGCATGTACGGCACGCCCGTCTCGACCTGCGACTCGATGATCGCGAACCACAGATCC 1178064 Query 63132 CGAGCCTTTA--TTATAGATTTGTATCTCCTTTCTCTTTCGTATAGAGTATACAATCGTT 63189 | ||||| | | ||| | | | | ||| | ||||| || |||| || | Sbjct 1178063 TGCGCCTTCACCTGCCGGAT--GAACCGACCTTCCTTCTCGTAGCCCGTGTACAGCCGCT 1178006 Query 63190 CGAACTCGTCTCCCCAAACATTGTCCAATCTAGGACATTCATCCGGACACATCAACGACC 63249 | ||||| || ||||| | || | || || || | ||||||||| | || Sbjct 1178005 CAAACTCTTCGCCCCACGACTCCGACAGCCCGGGGCAGTCGTGCGGACACATAAGGCTCC 1177946 Query 63250 ACTCTCCGTCATCCTTCACTCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATA 63309 || | ||| ||| ||| || ||||| || ||||| || | ||| || || || | Sbjct 1177945 ACATTTCGTTCGCCTCCACCCGCTTCATGAACAGATCCGGCACCCACAGCGCGTAGAACA 1177886 Query 63310 GATCTCTTGTTCTATGTTCCTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAA 63369 || | | | ||||| || || || || || || |||||||| ||| | | | Sbjct 1177885 TGTCACGCGCACGGACCTCCTCCTTGCCAGTGTTTTTCTTCAGATCGAGAAACTCAAACA 1177826 Query 63370 TATCAGAATGCCACGGTTCCAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCT 63429 ||| ||||||||| || | ||| ||||| | | || || || ||||| || |||| Sbjct 1177825 CATCGCCATGCCACGGCTCGAGGTAGATGGCGAACGCACCGGGACGCTTGTTGCCGCCCT 1177766 Query 63430 GATCTATGTATCTAGCGGTGTTATTATAAACTCTCAACATTGGAATAATACCGTTTGATA 63489 | || | || | || ||||| || || || | || ||| |||| | ||||| || | Sbjct 1177765 GGTCCACATACCGGGCCGTGTTGTTGTAGACACGCAGCATCGGAACCAACCCGTTGGAGA 1177706 Query 63490 TACCATTGGTACCGGAGATATAGCCTCCACTGGCACGAAT--ATTACTAATTGATAGACC 63547 |||| || || || | || || || | || || || | | | || | |||| Sbjct 1177705 TACCGTTCGTGCCCGCAATGTACGTACCCTTCGCCCGGATGCAGTGCACGTTCA--GACC 1177648 Query 63548 TATTCCCCCTGCCATTTTAGAGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTC 63607 || || || || || ||||| | |||||| | || | |||||| || || || || Sbjct 1177647 AATGCCTCCGGCGGACTTGGAGATCAGTGCGCACTGCTTCAGCGTGTCGTAAATTCCCTC 1177588 Query 63608 TATGCTATCATCGATCATGTTAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCC 63667 || || || || ||| | || ||||| ||| |||| |||| | || || | Sbjct 1177587 GATACTGTCGTCCGACATCGTTAGGAGAAAGCAGGACGACAGTTGGGGCCGCTGCGTGGC 1177528 Query 63668 CGCATTAAATAAGGTAGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGT 63727 ||| ||| | ||| || || ||||||||||| || || ||||| | ||||||||| Sbjct 1177527 CGCCGCAAACATGGTCGGCGAGGCGTGCGTAAAGTATCGCTCCGAAAGCAAATTGTACGT 1177468 Query 63728 CTCAATAGCTGAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTG 63787 || || || | || || ||| || || || | || || ||||| | |||||| Sbjct 1177467 TTCGATTGCCGCATCGATGTCCTCGCCGTGGATCCCGATGGCAACGCGCATCAGCATGTG 1177408 Query 63788 CTGAGGTCTTTCAACAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTT 63847 ||| |||| ||| || || ||| || || |||| || |||||| ||| | ||||| Sbjct 1177407 CTGCGGTCGTTCGACGATCTTGCCCTTGATCTTCAGCAGGTAGGACCGTTCGAGCGTTTT 1177348 Query 63848 AAAACCAAAATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGC 63902 || |||||||| ||||| |||||| || ||||| || || |||| || ||| Sbjct 1177347 GAAGCCAAAATAATTGTACCCAAAGTCGCGATCGTAGATGATGGCCGAGTTCAGC 1177293 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629742084869760