Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_003494.1 Length=111362 Score E Sequences producing significant alignments: (Bits) Value seq8981 107 1e-18 seq9254 84.2 2e-11 >seq8981 Length=1360667 Score = 107 bits (118), Expect = 1e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Minus Query 33525 CGATGGGTGCAAATGCGTCAAGATCAAGCTGCGCAAGATACGCATACCAGAGATGGGCGA 33584 ||| || | ||| | | ||||||| ||||| | | || || || |||| ||||| Sbjct 1108239 CGAGGGATACAAGTTCTGCAAGATCCGTGTGCGCTCGGTGCGTATCCCGCAGATTGGCGA 1108180 Query 33585 CAAGTTTGCATCGTT-CACGGCCCAGAAGGGCACGTGCGGCATGATGTACGACCAGTGGG 33643 ||||||||||||| ||||| | ||||||| || |||||||| |||| ||| || Sbjct 1108179 CAAGTTTGCATCGCGGCACGGGC-AGAAGGGAACCTGCGGCATTCAGTACCGGCAGGAGG 1108121 Query 33644 ACATGCCGTTCACGGCCGACGGCGTGGTCCCGGACCTAGTCATCAACCCGCATGCGTTCC 33703 | |||||||||||| ||| ||| | |||||| | ||||||||||||| || ||| Sbjct 1108120 ATATGCCGTTCACGTGCGAGGGCATTACGCCGGACATTATCATCAACCCGCACGCCATCC 1108061 Query 33704 CCTCGCGCATGAC 33716 | ||||| ||||| Sbjct 1108060 CGTCGCGTATGAC 1108048 >seq9254 Length=4138565 Score = 84.2 bits (92), Expect = 2e-11 Identities = 81/104 (78%), Gaps = 0/104 (0%) Strand=Plus/Minus Query 22789 TTTGCGGCCATATTCTGGCTGAAGAAACGTTCGCTCATGCCAGGGTTGGCGTTTTCCAAC 22848 ||||| || || |||||||| ||||| || || |||||||| ||| | || || ||| Sbjct 2197331 TTTGCCGCTATCTTCTGGCTTAAGAAGCGAGGACTGATGCCAGGCTTGACCTTCTCGAAC 2197272 Query 22849 GAGTTGATTAGCCGTGACGAAGGTCTACACTGTGACTTTGCTTG 22892 ||| ||||| |||||||| || | ||||||||||||||||| Sbjct 2197271 GAGCTGATTTCGCGTGACGAGGGCTTGCACTGTGACTTTGCTTG 2197228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 356191955401576