Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq9207 239 7e-58 seq8889 185 1e-41 seq9254 122 1e-22 seq9041 118 2e-21 >seq9207 Length=1443628 Score = 239 bits (264), Expect = 7e-58 Identities = 661/995 (66%), Gaps = 29/995 (3%) Strand=Plus/Plus Query 96400 TGGACTCGGCCATTGTAGACGATCGCGATTTTCAATCTTTGACCTATTTTGCATACAAGA 96459 || |||||||||| | |||||||||| ||| | | ||||||| | ||| | Sbjct 1177295 TGAACTCGGCCATCATCTACGATCGCGACTTTGGGTAC---AATTATTTTGGCTTCAAAA 1177351 Query 96460 CGCTAGAGCGTACCTATCTGATAAAGCTGGCCGACGGTAAGATTTGTGAACGAGTGCAGC 96519 |||| || || |||| ||| | ||| | | | || ||||| |||||| ||||| Sbjct 1177352 CGCTCGAACGGTCCTACCTGCTGAAGAT---CAAGGGCAAGATCGTCGAACGACCGCAGC 1177408 Query 96520 ACATGTACATGAGGACCGCGCTCGGTATTCACGGTCGGGATATTGAATCGGTAATCGAAA 96579 ||||| ||| | || |||| || ||||| ||| || || ||| |||||||| Sbjct 1177409 ACATGCTGATGCGCGTTGCCATCGGGATCCACGGCGAGGACATCGATGCGGCAATCGAAA 1177468 Query 96580 CGTACAATCTACTCTCGAACCGCTACTATGTACATTCGACGCCTACTCTGTGTCATGCGG 96639 |||||||| | || ||| | || |||| | || | |||| || ||| | |||| Sbjct 1177469 CGTACAATTTGCTTTCGGAGCGATACTTTACGCACGCCTCGCCGACCATGTTTGCGGCGG 1177528 Query 96640 CAACGAATCGTTCC-AACTATGCCTCTTGCTATCTGCT--CGAACTCAAAGAGGACAGCA 96696 | ||| | || || |||| | | || |||| ||| || ||| || || ||||| | Sbjct 1177529 CCACGCAGCGGCCCCAACTGT-CGTCCTGCTTTCTCCTAACGATGTCG--GACGACAGTA 1177585 Query 96697 TCGGTGGCGTTATGGACACGCTAAAGGACGCGGCCACC-ATTTCAAAACACTGTGGCGGT 96755 ||| || || |||||||| ||| | | | ||| || || || | || || Sbjct 1177586 TCGAGGGAATTTACGACACGCTGAAGCA-GTGCGCACTGATCTCCAAGTCCGCCGGAGGC 1177644 Query 96756 GTAGGTTTGCATGTGCACAAGTTGCG-CTGTAAAAACTCTACGATTCATTCA----ACAA 96810 | ||| || | |||||| ||| | | || |||| | |||| || | Sbjct 1177645 ATTGGTCTGAACGTGCAC----TGCATCCGGGCGAAGGGTACG-TACATTGCGGGCACGA 1177699 Query 96811 ACGGCAACGCCAGTGGCCTAGTGCCAATGCTCAGAATGTACAATGCAATGTCACGATACG 96870 |||| | | ||| || | || || ||||| | | ||||| | | | || || | Sbjct 1177700 ACGGTATCTCCAACGGGTTGGTTCCGATGCTGCGTGTCTACAACAACACGGCCCGGTATG 1177759 Query 96871 TTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTTGGCACG 96930 | ||||||||||| || || || || || | ||| ||||| | || || ||||| | Sbjct 1177760 TGGACCAGGGCGGCAACAAGCGTCCCGGTGCGTTCGCCATCTACCTCGAGCCGTGGCATG 1177819 Query 96931 CGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCACGAGCCA 96990 || || ||||| ||| |||| || |||||| ||||| || |||| || || Sbjct 1177820 GCGATGTGTTTGAGTTTCTCGATCTGAAGAAAAACACTGGCAAGGAGGAGGTCCGTGCGC 1177879 Query 96991 GGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGTCAACGACGGTG 97050 | ||| |||| || || || |||||||| ||| ||||||||||||| || | | || Sbjct 1177880 GTGACATGTTCTACGCGCTGTGGGTGCCGGATCTGTTCATGAAGCGGGTGGAGG-CGAAC 1177938 Query 97051 GCTAC-TGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCTGGGGCGAA 97109 | | |||||||| ||||| || || | ||||| ||||| || | ||||||||| Sbjct 1177939 GAAATGTGGAGCCTTATGTGTCCGCACGACTGCCCCGGGCTGTCGGAGTCGTGGGGCGAA 1177998 Query 97110 GAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCGATACGTGAGACGAGTCGAT 97169 ||||||||| |||||||| ||||||| | || || || | | | | | || | Sbjct 1177999 GAGTTTGAGCGGCTGTACACGGGCTACGAGAAGGAAGGTCGGTTCATCCGGCAGGTGAAG 1178058 Query 97170 GCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACTCCGTACATT 97229 || | || |||||| || ||| | | | ||||| ||||| || |||||||| Sbjct 1178059 GCGCAGGATCTGTGGTTCGCGATCATCGAGTCGCAGGTCGAGACGGGCGTGCCGTACATG 1178118 Query 97230 CTCTACAAGGATACCGTG-AATCGCAACAGCAACCAACGCCACTTGGGCACCATCAAGGG 97288 |||||||||||| |||| || || || |||||||| | || ||||||| |||||| | Sbjct 1178119 CTCTACAAGGAT-GCGTGCAACCGGAAGAGCAACCAGCAGAACGTGGGCACGATCAAGTG 1178177 Query 97289 CTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCAGTTTGCGT 97348 ||| || ||||||||||| || || |||||| | || |||||| | || || ||| Sbjct 1178178 CTCGAACCTGTGCACGGAGATCGTCGAGTACTCGTCGAAGGACGAAATTGCGGTGTGCAA 1178237 Query 97349 TCTGGCATCGGTCAATCTGCCCAAGTTTGTAGAGG 97383 |||||| ||| | ||| || |||||| |||| Sbjct 1178238 TCTGGCGTCGATTGCGCTGAACATGTTTGT-GAGG 1178271 Score = 131 bits (144), Expect = 2e-25 Identities = 162/222 (73%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 98040 TACAAGACTGTCTGGGAGATTCCGACCAAGACGCTGATCGATATGGCTGCCGACAGAGGT 98099 |||||||| || |||||||| || || ||| ||| | ||||| || ||| | ||| Sbjct 1178941 TACAAGACGGTGTGGGAGATATCGGTGAAAACGTGCATCAAAATGGCCGCGGACCGGGGT 1179000 Query 98100 GTCTACATTGACCAGAGTCAATCGTTCAATCTGTACGTTGCCGAGCCCACCTACAGTCGT 98159 | | ||| || ||| || |||||||| | |||| ||||| || | |||| | Sbjct 1179001 GCGTTCATCGATCAGTCCCAGTCGTTCAACATTCACGTGGCCGAACCGAACTACGGCAAG 1179060 Query 98160 ATGACTTCGATACACTTTTACGCATGGAACAAGGGCCTCAAGACGGGCATGTACTATCTG 98219 |||| ||||| ||||| |||| ||||| | |||||| ||||||||||||||||||||| Sbjct 1179061 CTGACGTCGATTCACTTCTACGGCTGGAAGATGGGCCTGAAGACGGGCATGTACTATCTG 1179120 Query 98220 AGAACAAAGTCGGCCACCAATGCCATACCATTTACGGTGGAC 98261 | || ||| ||||| || || || | |||||||||||| Sbjct 1179121 CGCACCAAGCCGGCCGTGAACGCGATCCAGTTTACGGTGGAC 1179162 >seq8889 Length=89190 Score = 185 bits (204), Expect = 1e-41 Identities = 392/581 (67%), Gaps = 8/581 (1%) Strand=Plus/Minus Query 49797 CCGTGGAGCCTCCCATGTTTCTATACATGATGGCCTTCATGACGACCACGGTCATCGAGC 49856 |||| || || | ||||| || ||||||||||| |||||| |||| |||| |||||| Sbjct 79117 CCGTCGAACCGTCGATGTTCCTGTACATGATGGCGTTCATGCTGACCTCGGTTGTCGAGC 79058 Query 49857 AGGCGTTTTACGTGTACCAAGCGTGCACCGTCAACCATGGCTACTCGCCAGAGGTGTGCC 49916 |||| |||| | | ||| ||||||||||||| ||||||| ||||||| || | |||| Sbjct 79057 AGGCTTTTTTCCTCTACAAAGCGTGCACCGTGGACCATGGGTACTCGCACGAAATTTGCC 78998 Query 49917 ACAACATTAGCCAGTACGATGACATCAACAACCGAGTCCAGCAGACTGTGTCTACATTTC 49976 ||||| |||||| | ||||| || || | |||||| ||| || || || | Sbjct 78997 TAAACATCGAACAGTACCAGGACATTAAGAAGCAGGTCCAGGTGACAACCTCGACGTTCC 78938 Query 49977 ATCAGTGGAACGGTGTAGCCAGTCATGTGGTGCCCTTTATATTGGCCTTTTTCCTAGGAT 50036 | ||||||||| | |||| | || || || | | | || |||| || || Sbjct 78937 ACCAGTGGAACAACATCGCCATGTACGTCGTACCGATCGTCCTCGCTCTTTTTCTTGGTG 78878 Query 50037 CCTATAGTGATAGGCGCGGTAGAAAGATTGTACTCGTATGTGGACTCGTAGGTAAACTCT 50096 ||| || |||||||| | ||| | |||| || || || || || | Sbjct 78877 CCTGGTCGGACCGGCGCGGTCGGAAGCTACCACTCATACTCGGTCTTACCGGAAAGTTGA 78818 Query 50097 TTTTCTCGGCAATGCTAACCGTAAACAGTCTCAAG--AGC-TGGCCCGTAGAGTATATAA 50153 | | |||| ||| | ||||||| | || | | | ||||| || ||||| || | Sbjct 78817 TCTACTCGCTTATGATCGTGGTAAACACACGCATGCCATCGTGGCCAGTTGAGTACATCA 78758 Query 50154 TCTACACGGCATCCTTTCCGAGTGCACTCACCGGAGCCGATTTGACCATATTCGCAGCGT 50213 |||||||||| | | ||||| | || ||||||||||| | |||| || || | | Sbjct 78757 TCTACACGGCGACAATCCCGAGCGTTCTGACCGGAGCCGACATTGCCATCTTTGCCTCCT 78698 Query 50214 GCTTTGCCTACATTGCCGATGTGTCGACTGTGGAGAATCGCACGCTACGAGTGGGCATCT 50273 |||| || ||||| |||| | |||| || ||| | || || ||||| | |||| Sbjct 78697 GCTTCGCGTACATCTCCGACATAACGACGGTCGAGGAGCGTACCCTACGCATCACCATCC 78638 Query 50274 TGGATGCCGTCTACCTGAGCACGATGCCAACCGGTGTGGCGATCGGTAGTGTGCTGTGGA 50333 | ||||| |||||| ||||||||||||| ||| || || |||||| |||| | | | Sbjct 78637 TCGATGCGACCTACCTCAGCACGATGCCAATCGGGGTCGCCCTCGGTAATGTGATCTTTA 78578 Query 50334 AGCGATTCCG----ATCCTACCCCATCATGTTTGCAATCAA 50370 | | | | | ||| ||| | |||||||| || ||||| Sbjct 78577 A-CCACACGGGCAAATCGTACACGATCATGTTCGCCATCAA 78538 >seq9254 Length=4138565 Score = 122 bits (134), Expect = 1e-22 Identities = 234/341 (69%), Gaps = 13/341 (4%) Strand=Plus/Minus Query 125430 GTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGGCCATCTTTTGG 125489 || || || |||||||| ||||| || ||||| || || ||||| || ||||| ||| Sbjct 2197373 GTCGCGTTTGCCGCCGTCGAGGGAATTTTCTTCAGCGGCAGCTTTGCCGCTATCTTCTGG 2197314 Query 125490 CTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCGAGAC 125549 || |||||||| ||||| ||||| || |||| | |||||| | || || || ||| Sbjct 2197313 CTTAAGAAGCGAGGACTGATGCCAGGCTTGACCTTCTCGAACGAGCTGATTTCGCGTGAC 2197254 Query 125550 GAGGGCCTACACTGTGACTTTGCCATTCTACTGTTTCGCAACTATCTGCGTCCCGAG-TG 125608 |||||| | |||||||||||||| || |||| ||| || ||| || || | Sbjct 2197253 GAGGGCTTGCACTGTGACTTTGCTTGCCTTATGTT---CAAATACCTGGTTCAAAAGCCG 2197197 Query 125609 CAGATCCAGCG-ATGAAAAGGTCATCAACATTGTAACCGATGCCGTGAGGATAGAACAAG 125667 | | |||| ||| || ||||| | |||||| ||| || ||||| | Sbjct 2197196 ACGCGCGAGCGTGTGACTAG--CATCA------TTCGCGATGCGGTGGTAATCGAACAGG 2197145 Query 125668 AGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGCAAGCTAATGTGCG 125727 |||| || ||| | | || || ||| ||| | ||||||||||| | || |||| Sbjct 2197144 AGTTCCTTACCAAGGCGCTGCCAGTCGATATGCTGGGCATGAACTGTGACCTGATGTCGC 2197085 Query 125728 AGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTG 125768 ||||||| ||||| || || || || || ||| ||||||| Sbjct 2197084 AGTACATCGAGTTCGTTGCCGACCGGCTGCTGGTCGAGTTG 2197044 Score = 122 bits (134), Expect = 1e-22 Identities = 197/282 (70%), Gaps = 11/282 (4%) Strand=Plus/Minus Query 125038 AGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTGTCCAAGGACCTGTACGATT 125097 |||| |||| || || |||||||| || ||||| || || || |||||| || | || | Sbjct 2197841 AGGCCGAGGCATCTTTCTGGACGGTAGAGGAGGTAGACCTCTCGAAGGACATGAAGGACT 2197782 Query 125098 GGGAGACTCGTTTGACTGAAACTGAGCGAGAGT----TTATATCGCACATTTTGGCCTTC 125153 ||||| ||||| ||||| |||||| || | || |||||| | | || ||| Sbjct 2197781 GGGAG--TCGTT-----GAAACCGAGCGAACGTCACTTCATCTCGCACGTGCTCGCTTTC 2197729 Query 125154 TTTGCCGGCTCCGATGGAATCGTCAACGACAATCTGTTGACACGATTCTCTCAAGAGTTG 125213 || |||| || || |||||||||||||| |||||| | ||||||| || || || Sbjct 2197728 TTCGCCGCATCGGACGGAATCGTCAACGAGAATCTGGTCGAACGATTCAGCCAGGAAGTG 2197669 Query 125214 ACCATTCCAGAGGTGTCGTGCTTTTACGGATTCCAAATCATGATTGAGAACGTGCACTCG 125273 | | || | | ||||| || || ||||| ||| ||| || ||||| ||| Sbjct 2197668 CAGGTGACCGAAGCGCGCTGCTTCTATGGTTTCCAGATCGCGATGGAAAACGTCCACAGC 2197609 Query 125274 GAAATGTACTCTACACTGATTGACATGTACATTCGCGATCCG 125315 || |||||||| ||||| |||| ||||||||| || ||| Sbjct 2197608 GAGATGTACTCCCTGCTGATCGACACGTACATTCGTGACCCG 2197567 >seq9041 Length=338010 Score = 118 bits (130), Expect = 2e-21 Identities = 193/273 (71%), Gaps = 4/273 (1%) Strand=Plus/Plus Query 70145 GGTCAGGGTGTTGATCAATTG-CAGACAATCATTGACACTCTCAAGACCAATCCAACAGA 70203 ||| | ||| ||||||| || | || | | || |||| | |||| |||||| || Sbjct 58713 GGTAAAGGTATTGATCAGCTGGCTGA-AGTAATCGACAAGATAAAGAACAATCCTTACGA 58771 Query 70204 TAGGAGGATCGTAATGTGCTCATGGAATCCTGCAGATTTGCACCAAATGGCACTACCACC 70263 | | | ||| | ||| || |||||||||| || | | | ||||||||||| || Sbjct 58772 TCGTCGAATCATCATGAGCGCATGGAATCCAATCGACATTCCGAACATGGCACTACCCCC 58831 Query 70264 GTGTCACTGTTTGGCTCAGTTTTAC-TCGTACGATGGCAAATTGTCATGCTTAATGTATC 70322 || || |||||||| || |||||| | | | ||||| || |||| ||| ||||||| Sbjct 58832 TTGCCATTGTTTGGCCCAATTTTACGTAGCA-GATGGGGAACTGTCCTGCCAGATGTATC 58890 Query 70323 AGAGGAGTGCCGACATGGGCCTCGGTGTACCCTTTAACATTGCAAGCTATTCTATGTTGA 70382 | || |||||| | || || || |||||||| || ||||||||||| || || | | Sbjct 58891 AACGGTCGGCCGACGTAGGACTAGGAGTACCCTTCAATATTGCAAGCTACTCCTTGCTCA 58950 Query 70383 CGCACATGATTGCTCACATTACCGGCCTGAAAG 70415 | ||||||||||| ||| | || || || |||| Sbjct 58951 CACACATGATTGCCCACGTCACTGGACTTAAAG 58983 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 740970347001920