Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14]
9,592 sequences; 220,777,669 total letters
Query= NC_005309.1
Length=359853
Score E
Sequences producing significant alignments: (Bits) Value
seq8738 134 3e-26
seq8899 123 6e-23
seq9239 114 3e-20
seq9254 93.3 1e-13
>seq8738
Length=1280009
Score = 134 bits (148), Expect = 3e-26
Identities = 170/234 (73%), Gaps = 0/234 (0%)
Strand=Plus/Plus
Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389
||||| || | || | ||| || ||||| | ||||| || ||||| || || || ||
Sbjct 1177432 ATTCCACCGCGCAGACGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCC 1177491
Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449
|| ||||| | || ||||| || || || || ||||| || || | ||| ||||| |||
Sbjct 1177492 GAAAGAGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGA 1177551
Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509
|| ||||| || || ||||||||||| || || ||||| || | || || ||| ||
Sbjct 1177552 GGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATCGTGTCCGAAGGCTCC 1177611
Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563
||||| | || || ||||| || ||||| || || || || |||||||| |||
Sbjct 1177612 ACCTCCAACGTGATGGTCTTTCCCGTAAGGGTCTTGACGAAAATCTGCATCTTG 1177665
Score = 120 bits (132), Expect = 7e-22
Identities = 155/214 (72%), Gaps = 0/214 (0%)
Strand=Plus/Plus
Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406
||| || ||||| | ||||| || ||||| || || || || || || || | || ||
Sbjct 1177221 AAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCATC 1177280
Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466
||| || || || || ||||| || || | ||| ||||| ||||| ||||| || || ||
Sbjct 1177281 TTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTC 1177340
Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526
||||||||| || || ||||| || | || || ||| || ||||| | || || ||
Sbjct 1177341 CTGAATCTTGGCCTTCACATTCTCAATCGTGTCCGAAGGCTCAACCTCCAACGTGATGGT 1177400
Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560
||| ||||| || || || || || || ||||||
Sbjct 1177401 CTTTCCAGTCAGGGTCTTGACGAAAATTTGCATT 1177434
>seq8899
Length=3132144
Score = 123 bits (136), Expect = 6e-23
Identities = 151/205 (74%), Gaps = 1/205 (0%)
Strand=Plus/Plus
Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422
|| || || |||||||| || ||||| || || || | || || || || || || ||
Sbjct 384483 GTCGACTCCTTCTGAATGTTGTAGTCCGAAAGCGTACGGCCATCCTCCAGCTGCTTACCG 384542
Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482
|| || || || | ||||||||| || || |||||||| ||||||||||| || || ||
Sbjct 384543 GCGAAGATCAGACGCTGTTGATCTGGCGGAATTCCTTCCTTATCCTGAATTTTCGCCTTC 384602
Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542
||||| || | || || || || ||||| || || || ||||| ||||| || |||
Sbjct 384603 ACATTCTCGATCGTGTCCGACGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTT 384662
Query 104543 TTTACAAATATCTGCAT-TTTGTGT 104566
|| || || |||||||| ||| |||
Sbjct 384663 TTCACGAAAATCTGCATCTTTCTGT 384687
>seq9239
Length=1433044
Score = 114 bits (126), Expect = 3e-20
Identities = 225/328 (69%), Gaps = 6/328 (2%)
Strand=Plus/Minus
Query 238561 AGCTCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAA 238620
|||| || | ||| |||| ||||| || ||||| |||||||| | || ||||| |
Sbjct 683560 AGCTGGAAACGGCCAAAACGCACGACGATCTGTGGAACGCCGCCCAGCTGCAGATGGTGA 683501
Query 238621 GACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGA 238680
||||| |||||| | ||| | || ||||| ||||| || |||||||| || ||||
Sbjct 683500 AGGAGGGCAAGATGCATGGATTCCTGCGGATGTACTGGGCGAAGAAGATACTCGAGTGGA 683441
Query 238681 CTAGATCTCCAAAGGAAGCTCTTAGATATAGT-ATTTATCTGAACGATAAATACGAACTC 238739
| | | || ||||||| || || | || || ||||||||| ||| ||
Sbjct 683440 GCAAAACGCCCGAGGAAGCGCTC-GAGGCGGCGATCTACCTGAACGATCGTTACAGCCTA 683382
Query 238740 GACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGAT 238799
|| || || || ||||| ||||| ||||| |||||||| || |||| | ||||||
Sbjct 683381 GATGGGCGCGACCCGAACGGGTACGTCGGTTGCATGTGGTCGATCGCTGGAATTCACGAT 683322
Query 238800 AGGGCATGGTCTGA--GAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAA 238857
|| |||| || | ||| || || || ||| | ||||||||||| || |||||
Sbjct 683321 CAGGGATGGAAGGAACGGGAC--ATCTTCGGTAAAATAAGATACATGAACTACGAAGGTT 683264
Query 238858 CTAAGAAAAAATTTGATGTAAATGCTTT 238885
||| | || || ||||| || || ||
Sbjct 683263 GTAAAAGGAAGTTCGATGTGAACGCGTT 683236
>seq9254
Length=4138565
Score = 93.3 bits (102), Expect = 1e-13
Identities = 154/220 (70%), Gaps = 7/220 (3%)
Strand=Plus/Minus
Query 269069 TGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAA-----ACGATAGCGCGCCTT 269123
||||||| || || |||| ||||| ||||| ||||| | || ||| | |||
Sbjct 2197445 TGTGTGAAGAAGAAGGCTGACTGGGCACTGAACTGGATTTCGAGCAAGAAAGC-CAACTT 2197387
Query 269124 ACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTG 269183
||| || | | || || |||||||| || || || || ||||| || ||||
Sbjct 2197386 -CGGCGAGCGTGTTGTCGCGTTTGCCGCCGTCGAGGGAATTTTCTTCAGCGGCAGCTTTG 2197328
Query 269184 CCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAAT 269243
|||||||||| ||| | ||||| |||| || |||||||| || || ||||| |||||
Sbjct 2197327 CCGCTATCTTCTGGCTTAAGAAGCGAGGACTGATGCCAGGCTTGACCTTCTCGAACGAGC 2197268
Query 269244 TGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTG 269283
|||| | ||||| || || ||||| ||||| |||||
Sbjct 2197267 TGATTTCGCGTGACGAGGGCTTGCACTGTGACTTTGCTTG 2197228
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1151256896015136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |