Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq8738 134 3e-26 seq8899 123 6e-23 seq9239 114 3e-20 seq9254 93.3 1e-13 >seq8738 Length=1280009 Score = 134 bits (148), Expect = 3e-26 Identities = 170/234 (73%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 104330 ATTCCCCCTCTTAGCCTAAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCA 104389 ||||| || | || | ||| || ||||| | ||||| || ||||| || || || || Sbjct 1177432 ATTCCACCGCGCAGACGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCC 1177491 Query 104390 GATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGA 104449 || ||||| | || ||||| || || || || ||||| || || | ||| ||||| ||| Sbjct 1177492 GAAAGAGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGA 1177551 Query 104450 GGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCT 104509 || ||||| || || ||||||||||| || || ||||| || | || || ||| || Sbjct 1177552 GGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATCGTGTCCGAAGGCTCC 1177611 Query 104510 ACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAATATCTGCATTTTG 104563 ||||| | || || ||||| || ||||| || || || || |||||||| ||| Sbjct 1177612 ACCTCCAACGTGATGGTCTTTCCCGTAAGGGTCTTGACGAAAATCTGCATCTTG 1177665 Score = 120 bits (132), Expect = 7e-22 Identities = 155/214 (72%), Gaps = 0/214 (0%) Strand=Plus/Plus Query 104347 AAGTACTAGATGTAATGTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTC 104406 ||| || ||||| | ||||| || ||||| || || || || || || || | || || Sbjct 1177221 AAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCATC 1177280 Query 104407 TTCTAGTTGTTTTCCAGCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATC 104466 ||| || || || || ||||| || || | ||| ||||| ||||| ||||| || || || Sbjct 1177281 TTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTC 1177340 Query 104467 CTGAATCTTTGCTTTTACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGT 104526 ||||||||| || || ||||| || | || || ||| || ||||| | || || || Sbjct 1177341 CTGAATCTTGGCCTTCACATTCTCAATCGTGTCCGAAGGCTCAACCTCCAACGTGATGGT 1177400 Query 104527 CTTACCAGTAAGTGTTTTTACAAATATCTGCATT 104560 ||| ||||| || || || || || || |||||| Sbjct 1177401 CTTTCCAGTCAGGGTCTTGACGAAAATTTGCATT 1177434 >seq8899 Length=3132144 Score = 123 bits (136), Expect = 6e-23 Identities = 151/205 (74%), Gaps = 1/205 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || |||||||| || ||||| || || || | || || || || || || || Sbjct 384483 GTCGACTCCTTCTGAATGTTGTAGTCCGAAAGCGTACGGCCATCCTCCAGCTGCTTACCG 384542 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||||||||| || || |||||||| ||||||||||| || || || Sbjct 384543 GCGAAGATCAGACGCTGTTGATCTGGCGGAATTCCTTCCTTATCCTGAATTTTCGCCTTC 384602 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | || || || || ||||| || || || ||||| ||||| || ||| Sbjct 384603 ACATTCTCGATCGTGTCCGACGGCTCGACCTCAAGGGTGATGGTCTTGCCAGTGAGGGTT 384662 Query 104543 TTTACAAATATCTGCAT-TTTGTGT 104566 || || || |||||||| ||| ||| Sbjct 384663 TTCACGAAAATCTGCATCTTTCTGT 384687 >seq9239 Length=1433044 Score = 114 bits (126), Expect = 3e-20 Identities = 225/328 (69%), Gaps = 6/328 (2%) Strand=Plus/Minus Query 238561 AGCTCGAGAGAGCCGAAACTCACGATCCCCTATGGAATTCCGCCCAGATACAAATGGTAA 238620 |||| || | ||| |||| ||||| || ||||| |||||||| | || ||||| | Sbjct 683560 AGCTGGAAACGGCCAAAACGCACGACGATCTGTGGAACGCCGCCCAGCTGCAGATGGTGA 683501 Query 238621 GACTAGGCAAAATGCATAGTTTCTTACGAATGTATTGGGCTAAAAAGATACTTGAATGGA 238680 ||||| |||||| | ||| | || ||||| ||||| || |||||||| || |||| Sbjct 683500 AGGAGGGCAAGATGCATGGATTCCTGCGGATGTACTGGGCGAAGAAGATACTCGAGTGGA 683441 Query 238681 CTAGATCTCCAAAGGAAGCTCTTAGATATAGT-ATTTATCTGAACGATAAATACGAACTC 238739 | | | || ||||||| || || | || || ||||||||| ||| || Sbjct 683440 GCAAAACGCCCGAGGAAGCGCTC-GAGGCGGCGATCTACCTGAACGATCGTTACAGCCTA 683382 Query 238740 GACGGTACGGATCCTAACGGATACGTAGGTTGTATGTGGTCAATATGTGGATTACACGAT 238799 || || || || ||||| ||||| ||||| |||||||| || |||| | |||||| Sbjct 683381 GATGGGCGCGACCCGAACGGGTACGTCGGTTGCATGTGGTCGATCGCTGGAATTCACGAT 683322 Query 238800 AGGGCATGGTCTGA--GAGACCTATATTTGGAAAAGTTAGATACATGAATTATGAAGGAA 238857 || |||| || | ||| || || || ||| | ||||||||||| || ||||| Sbjct 683321 CAGGGATGGAAGGAACGGGAC--ATCTTCGGTAAAATAAGATACATGAACTACGAAGGTT 683264 Query 238858 CTAAGAAAAAATTTGATGTAAATGCTTT 238885 ||| | || || ||||| || || || Sbjct 683263 GTAAAAGGAAGTTCGATGTGAACGCGTT 683236 >seq9254 Length=4138565 Score = 93.3 bits (102), Expect = 1e-13 Identities = 154/220 (70%), Gaps = 7/220 (3%) Strand=Plus/Minus Query 269069 TGTGTGAGaaaaaaaTCTGAATGGGCTCTGAAATGGATAA-----ACGATAGCGCGCCTT 269123 ||||||| || || |||| ||||| ||||| ||||| | || ||| | ||| Sbjct 2197445 TGTGTGAAGAAGAAGGCTGACTGGGCACTGAACTGGATTTCGAGCAAGAAAGC-CAACTT 2197387 Query 269124 ACGGAGAAAGGTTAGTTGCTTTTGCCGCTGTAGAAGGTATATTCTTTTCGGGGTCTTTTG 269183 ||| || | | || || |||||||| || || || || ||||| || |||| Sbjct 2197386 -CGGCGAGCGTGTTGTCGCGTTTGCCGCCGTCGAGGGAATTTTCTTCAGCGGCAGCTTTG 2197328 Query 269184 CCGCTATCTTTTGGTTGAAGAAAAGAGGCCTTATGCCAGGATTAACTTTCTCTAACGAAT 269243 |||||||||| ||| | ||||| |||| || |||||||| || || ||||| ||||| Sbjct 2197327 CCGCTATCTTCTGGCTTAAGAAGCGAGGACTGATGCCAGGCTTGACCTTCTCGAACGAGC 2197268 Query 269244 TGATAAGCAGGGACGAAGGTTTACACTGCGACTTCGCTTG 269283 |||| | ||||| || || ||||| ||||| ||||| Sbjct 2197267 TGATTTCGCGTGACGAGGGCTTGCACTGTGACTTTGCTTG 2197228 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151256896015136