Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_005337.1 Length=134431 Score E Sequences producing significant alignments: (Bits) Value seq9246 147 2e-30 >seq9246 Length=874175 Score = 147 bits (162), Expect = 2e-30 Identities = 235/336 (70%), Gaps = 6/336 (2%) Strand=Plus/Minus Query 5504 CCCGTGGACCCGAATCCGCCTGCGCCTCTTTCCGTATCGTCCAGGCACGCCACCTCTTCC 5563 |||||||| || || |||||||| || | || || | | ||| | | | ||||||| Sbjct 356005 CCCGTGGAGCCAAACCCGCCTGCACCACGCTCGGTGTTGCTGAGGGATGGAAGCTCTTCC 355946 Query 5564 ACATCGGGGAACGCAGCGCGCTCGCAGATCAGCTGCGCTATTCGGTCGCCCGTCTTTACC 5623 | ||| || | || ||||| || | |||||| || || ||||| |||||||| Sbjct 355945 AAATCCGGATAAGCGATTTTTTCGCAAATGAACTGCGCAATACGATCGCCTTTCTTTACC 355886 Query 5624 TCGAAATCGTTGTGGCCGAAGTTGAACAGCACCACGCCCACGTTGCCGCGGTAGTCGGCG 5683 ||||| ||| | | | | ||||||||| || || || ||||| || |||||||| || Sbjct 355885 TCGAACTCGGTCTCGGAGTGGTTGAACAGGACAACTCCGACGTTTCCCCGGTAGTCCTCG 355826 Query 5684 TCTATCACGCCCGCGCCCACGTCGATGAAGTGCTTGACCGCCAGGCCGGAGCGGGGAGCC 5743 || | ||| || || || || |||||||| | |||||| |||| |||||| || || || Sbjct 355825 TCGACCACACCGGCACCGACATCGATGAAATTCTTGACGGCCAAGCCGGATCGTGGCGCT 355766 Query 5744 ACGCGGCCGTAGCACCCATCGGGAAGCTGTATCTGCAGGTCCGTGAACACCACTCGCCG- 5802 || |||||||| || || || || | ||| | || | ||| || || |||| || | Sbjct 355765 ACTCGGCCGTAACAACCCTCCGGCACCTGCACTTGGATGTCGGT---CATCACTAGCTGT 355709 Query 5803 --ACCGCCCGCAGGGACGATGCAGTCGCAAGCGCTG 5836 |||| || || ||| || ||||| | || ||| Sbjct 355708 TTTCCGCGGGCTGGAACGGTGTAGTCGTAGGCACTG 355673 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 430004125565504