Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_005906.1 Length=81755 Score E Sequences producing significant alignments: (Bits) Value seq8802 105 3e-18 seq8710 93.3 2e-14 seq2123 91.5 8e-14 seq8848 89.7 3e-13 seq9218 87.8 9e-13 seq8230 87.8 9e-13 seq4933 87.8 9e-13 >seq8802 Length=184079 Score = 105 bits (116), Expect = 3e-18 Identities = 84/100 (84%), Gaps = 4/100 (4%) Strand=Plus/Plus Query 11434 TAGAATTAATAAAAAA---TCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCG 11490 || ||||||||||||| |||||| | ||| || |||||||||| ||||||||||| Sbjct 182333 TAAAATTAATAAAAAAGAATCAAATGGCTCCA-GAGAGGATCGAACTCACGACCTTCGCG 182391 Query 11491 TTATTAGCACGACGCTCTRACCAACTGAGCTAATGGGCCG 11530 |||||||||||||||||| |||| |||||||| |||||| Sbjct 182392 TTATTAGCACGACGCTCTAACCAGCTGAGCTATGGGGCCG 182431 Score = 89.7 bits (98), Expect = 3e-13 Identities = 71/86 (83%), Gaps = 0/86 (0%) Strand=Plus/Plus Query 11444 AAAAAATCAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGAC 11503 |||| || | ||||| | || |||||||||| |||||||||||||||||||||||| Sbjct 181682 AAAAGATTATTTTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGAC 181741 Query 11504 GCTCTRACCAACTGAGCTAATGGGCC 11529 ||||| |||| |||||||| ||||| Sbjct 181742 GCTCTAACCAGCTGAGCTATGGGGCC 181767 >seq8710 Length=157873 Score = 93.3 bits (102), Expect = 2e-14 Identities = 66/75 (88%), Gaps = 1/75 (1%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 23201 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 23260 Query 11515 CTGAGCTAATGGGCC 11529 ||||||| ||||||| Sbjct 23261 CTGAGCT-ATGGGCC 23274 Score = 91.5 bits (100), Expect = 8e-14 Identities = 64/74 (86%), Gaps = 0/74 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||||| Sbjct 22719 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAAC 22778 Query 11516 TGAGCTAATGGGCC 11529 ||||||| ||||| Sbjct 22779 TGAGCTATGGGGCC 22792 Score = 87.8 bits (96), Expect = 9e-13 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 23645 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 23704 Query 11515 CTGAGCTAATGGGCC 11529 |||||||| ||||| Sbjct 23705 CTGAGCTATGGGGCC 23719 >seq2123 Length=1082 Score = 91.5 bits (100), Expect = 8e-14 Identities = 77/93 (83%), Gaps = 3/93 (3%) Strand=Plus/Minus Query 11444 AAAAAATCAAA--TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACG 11501 ||||||| | | ||||| | || |||||||||| |||||||||||||||||||||| Sbjct 354 AAAAAATGAGAATTTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACG 295 Query 11502 ACGCTCTRACCAACTGAGCTAATGGGCCGTCGA 11534 ||||||| |||| ||||||| ||||| | |||| Sbjct 294 ACGCTCTAACCAGCTGAGCT-ATGGGGCCTCGA 263 >seq8848 Length=95256 Score = 89.7 bits (98), Expect = 3e-13 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 35802 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 35861 Query 11515 CTGAGCTAATGGGCCG 11530 |||||||| |||||| Sbjct 35862 CTGAGCTATGGGGCCG 35877 >seq9218 Length=786170 Score = 87.8 bits (96), Expect = 9e-13 Identities = 62/72 (86%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 11451 CAAATTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRA 11510 || |||||| | || |||||||||| ||||||||||||||||||||||||||||| | Sbjct 611684 CATATTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAA 611743 Query 11511 CCAACTGAGCTA 11522 ||| |||||||| Sbjct 611744 CCAGCTGAGCTA 611755 >seq8230 Length=25937 Score = 87.8 bits (96), Expect = 9e-13 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || |||||||||| ||||||||||||||||||||||||||||| |||| Sbjct 5915 TTGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAG 5974 Query 11515 CTGAGCTAATGGGCC 11529 |||||||| ||||| Sbjct 5975 CTGAGCTATGGGGCC 5989 Score = 87.8 bits (96), Expect = 9e-13 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Plus Query 11456 TGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAAC 11515 |||| | || |||||||||| ||||||||||||||||||||||||||||| |||| | Sbjct 9320 TGGCTCCAGAGAGGATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAGC 9379 Query 11516 TGAGCTAATGGGCCG 11530 ||||||| |||||| Sbjct 9380 TGAGCTATGGGGCCG 9394 >seq4933 Length=251959 Score = 87.8 bits (96), Expect = 9e-13 Identities = 64/75 (85%), Gaps = 0/75 (0%) Strand=Plus/Minus Query 11455 TTGGCCCATGAAAGGATCGAACCTTCGACCTTCGCGTTATTAGCACGACGCTCTRACCAA 11514 ||||| | || || ||||||| ||||||||||||||||||||||||||||| ||||| Sbjct 92376 TTGGCTCCAGAGAGTATCGAACTCACGACCTTCGCGTTATTAGCACGACGCTCTAACCAA 92317 Query 11515 CTGAGCTAATGGGCC 11529 |||||||| ||||| Sbjct 92316 CTGAGCTATGGGGCC 92302 Lambda K H 0.638 0.410 0.920 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 261460631024992