Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_006549.1 Length=140131 Score E Sequences producing significant alignments: (Bits) Value seq9325 123 2e-23 seq8738 107 2e-18 seq8899 105 6e-18 seq9240 86.0 6e-12 >seq9325 Length=2359367 Score = 123 bits (136), Expect = 2e-23 Identities = 157/214 (73%), Gaps = 4/214 (2%) Strand=Plus/Minus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGGAATCCT 94856 |||||||| | || |||||||| || | ||| || ||| || ||| || | |||| Sbjct 261112 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCG--TCCT 261055 Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916 ||||||| ||||| | ||||| || | ||||||||||| |||||||| || ||||| | Sbjct 261054 CCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCT 260995 Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976 || || ||||||||| ||| ||||| | | ||||| || | |||||||| | Sbjct 260994 GGATCTTAGCCTTGACGTTCTCGATGGTGTCCGAAGGCTCGACCTCGAGAGTGATGGTCT 260935 Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010 | ||||| || || ||||| || |||||||| || Sbjct 260934 TGCCAGTCAGCGTCTTCACGAAAATCTGCATTCT 260901 >seq8738 Length=1280009 Score = 107 bits (118), Expect = 2e-18 Identities = 167/239 (70%), Gaps = 0/239 (0%) Strand=Plus/Plus Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828 ||| ||| || ||| || | || || | |||| || | |||||| ||||| || | | Sbjct 1177423 AAAATTTGCATTCCACCGCGCAGACGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATG 1177482 Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888 || ||||| | ||| | ||| |||||||| || ||| ||||||| | | ||| Sbjct 1177483 TTGTAATCCGAAAGAGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGC 1177542 Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948 ||||||||||| || || || ||||| | ||| || ||||| || | | ||||| Sbjct 1177543 TGATCTGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATCGTGTCC 1177602 Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 | | || || || | ||||||||| ||||| ||||| || || || || |||||||| Sbjct 1177603 GAAGGCTCCACCTCCAACGTGATGGTCTTTCCCGTAAGGGTCTTGACGAAAATCTGCAT 1177661 Score = 93.3 bits (102), Expect = 4e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858 |||| || | |||||| ||||| || | ||| ||||| | || | ||| ||| Sbjct 1177225 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCATCTTCC 1177284 Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918 ||||| || ||| ||||||| | | |||||||||||||| || || || ||||| | | Sbjct 1177285 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGA 1177344 Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978 || || ||||| || | | ||||| | | || || || | ||||||||| ||| Sbjct 1177345 ATCTTGGCCTTCACATTCTCAATCGTGTCCGAAGGCTCAACCTCCAACGTGATGGTCTTT 1177404 Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||||| || || || || || || ||||| Sbjct 1177405 CCAGTCAGGGTCTTGACGAAAATTTGCAT 1177433 >seq8899 Length=3132144 Score = 105 bits (116), Expect = 6e-18 Identities = 117/156 (75%), Gaps = 0/156 (0%) Strand=Plus/Plus Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911 |||||||||||| || ||| | ||||| | | || |||||||| ||||| ||||| || Sbjct 384524 ATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGTTGATCTGGCGGAATTCCTTCCTT 384583 Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971 || | |||||| ||||| || ||| ||||| | | ||||| |||| ||||| Sbjct 384584 ATCCTGAATTTTCGCCTTCACATTCTCGATCGTGTCCGACGGCTCGACCTCAAGGGTGAT 384643 Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 ||| || ||||| || |||||||| || |||||||| Sbjct 384644 GGTCTTGCCAGTGAGGGTTTTCACGAAAATCTGCAT 384679 >seq9240 Length=943838 Score = 86.0 bits (94), Expect = 6e-12 Identities = 148/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852 |||| ||||| || | || || ||||| || | ||| || ||| || ||| | Sbjct 630369 CGCAGCACCAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTGCGTCCA 630428 Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912 ||||||||||| || ||| | ||||| | | ||||| || || || || || || ||| Sbjct 630429 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTG 630488 Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972 || | || || ||||| || ||| || || | | | ||||| |||| || ||| Sbjct 630489 TCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATG 630548 Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007 || || || || || ||||| || ||||||||||| Sbjct 630549 GTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 630583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 448237449885120