Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14]
9,592 sequences; 220,777,669 total letters
Query= NC_006549.1
Length=140131
Score E
Sequences producing significant alignments: (Bits) Value
seq9325 123 2e-23
seq8738 107 2e-18
seq8899 105 6e-18
seq9240 86.0 6e-12
>seq9325
Length=2359367
Score = 123 bits (136), Expect = 2e-23
Identities = 157/214 (73%), Gaps = 4/214 (2%)
Strand=Plus/Minus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGT--GTTGGAATCCT 94856
|||||||| | || |||||||| || | ||| || ||| || ||| || | ||||
Sbjct 261112 ACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCG--TCCT 261055
Query 94857 CCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCAT 94916
||||||| ||||| | ||||| || | ||||||||||| |||||||| || ||||| |
Sbjct 261054 CCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCT 260995
Query 94917 AAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTT 94976
|| || ||||||||| ||| ||||| | | ||||| || | |||||||| |
Sbjct 260994 GGATCTTAGCCTTGACGTTCTCGATGGTGTCCGAAGGCTCGACCTCGAGAGTGATGGTCT 260935
Query 94977 TTCCAGTAAGAGTTTTCACAAAGATCTGCATGCT 95010
| ||||| || || ||||| || |||||||| ||
Sbjct 260934 TGCCAGTCAGCGTCTTCACGAAAATCTGCATTCT 260901
>seq8738
Length=1280009
Score = 107 bits (118), Expect = 2e-18
Identities = 167/239 (70%), Gaps = 0/239 (0%)
Strand=Plus/Plus
Query 94769 AAATTTTACACTCCTCCTCTCAATCGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACG 94828
||| ||| || ||| || | || || | |||| || | |||||| ||||| || | |
Sbjct 1177423 AAAATTTGCATTCCACCGCGCAGACGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATG 1177482
Query 94829 TTATAATCGCTCATAGTGTTGGAATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGC 94888
|| ||||| | ||| | ||| |||||||| || ||| ||||||| | | |||
Sbjct 1177483 TTGTAATCCGAAAGAGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGC 1177542
Query 94889 TGATCTGGAGGAATACCTTCTTTGTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCA 94948
||||||||||| || || || ||||| | ||| || ||||| || | | |||||
Sbjct 1177543 TGATCTGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATCGTGTCC 1177602
Query 94949 GCGTGGTCGACGTCAATCGTGATGGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
| | || || || | ||||||||| ||||| ||||| || || || || ||||||||
Sbjct 1177603 GAAGGCTCCACCTCCAACGTGATGGTCTTTCCCGTAAGGGTCTTGACGAAAATCTGCAT 1177661
Score = 93.3 bits (102), Expect = 4e-14
Identities = 146/209 (70%), Gaps = 0/209 (0%)
Strand=Plus/Plus
Query 94799 ACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAATCCTCC 94858
|||| || | |||||| ||||| || | ||| ||||| | || | ||| |||
Sbjct 1177225 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCATCTTCC 1177284
Query 94859 AGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTGTCATAA 94918
||||| || ||| ||||||| | | |||||||||||||| || || || ||||| | |
Sbjct 1177285 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGA 1177344
Query 94919 ATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATGGTTTTT 94978
|| || ||||| || | | ||||| | | || || || | ||||||||| |||
Sbjct 1177345 ATCTTGGCCTTCACATTCTCAATCGTGTCCGAAGGCTCAACCTCCAACGTGATGGTCTTT 1177404
Query 94979 CCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||||| || || || || || || |||||
Sbjct 1177405 CCAGTCAGGGTCTTGACGAAAATTTGCAT 1177433
>seq8899
Length=3132144
Score = 105 bits (116), Expect = 6e-18
Identities = 117/156 (75%), Gaps = 0/156 (0%)
Strand=Plus/Plus
Query 94852 ATCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTT 94911
|||||||||||| || ||| | ||||| | | || |||||||| ||||| ||||| ||
Sbjct 384524 ATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGTTGATCTGGCGGAATTCCTTCCTT 384583
Query 94912 GTCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGAT 94971
|| | |||||| ||||| || ||| ||||| | | ||||| |||| |||||
Sbjct 384584 ATCCTGAATTTTCGCCTTCACATTCTCGATCGTGTCCGACGGCTCGACCTCAAGGGTGAT 384643
Query 94972 GGTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
||| || ||||| || |||||||| || ||||||||
Sbjct 384644 GGTCTTGCCAGTGAGGGTTTTCACGAAAATCTGCAT 384679
>seq9240
Length=943838
Score = 86.0 bits (94), Expect = 6e-12
Identities = 148/215 (69%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 94793 CGCAACACCAAGTGCAAAGTAGATTCCTTTTGCACGTTATAATCGCTCATAGTGTTGGAA 94852
|||| ||||| || | || || ||||| || | ||| || ||| || ||| |
Sbjct 630369 CGCAGCACCAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTGCGTCCA 630428
Query 94853 TCCTCCAGCTGTTTTCCGCCAAAGATTAATCTTTGCTGATCTGGAGGAATACCTTCTTTG 94912
||||||||||| || ||| | ||||| | | ||||| || || || || || || |||
Sbjct 630429 TCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTG 630488
Query 94913 TCATAAATTTTTGCCTTGACGGCGCCGACAGTGTCAGCGTGGTCGACGTCAATCGTGATG 94972
|| | || || ||||| || ||| || || | | | ||||| |||| || |||
Sbjct 630489 TCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATG 630548
Query 94973 GTTTTTCCAGTAAGAGTTTTCACAAAGATCTGCAT 95007
|| || || || || ||||| || |||||||||||
Sbjct 630549 GTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 630583
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 448237449885120
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |