Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq9207 266 3e-66 seq8899 116 3e-21 seq9240 111 1e-19 seq8738 105 6e-18 seq9325 98.7 8e-16 >seq9207 Length=1443628 Score = 266 bits (294), Expect = 3e-66 Identities = 1053/1644 (64%), Gaps = 26/1644 (2%) Strand=Plus/Minus Query 128772 TTGCGACTTGTCCACGGTAAATTTAATAGCGTCCGCTGCCGGCTTGGTGCGCAAATAGTA 128831 || ||| |||||||| ||||| | || |||| | | |||||||||||||||| |||||| Sbjct 1179171 TTTCGATTTGTCCACCGTAAACTGGATCGCGTTCACGGCCGGCTTGGTGCGCAGATAGTA 1179112 Query 128832 CATGCCTGTTTTCAAACCGCTTTTCCAAGTGTGCATGTGAATCGTGGTCAACAATGCGTA 128891 |||||| || |||| || | ||||| || | |||||||| |||| | |||| Sbjct 1179111 CATGCCCGTCTTCAGGCCCATCTTCCAGCCGTAGAAGTGAATCGACGTCAGCTTGCCGTA 1179052 Query 128892 GGTGGGTTGACTCaaaaaaaTATTAAATGATTGACTTTGATCAATAAAGGGGCCGCGATC 128951 | | |||| || ||| || || || || ||||| || || | || || || Sbjct 1179051 GTTCGGTTCGGCCACGTGAATGTTGAACGACTGGGACTGATCGATGAACGCACCCCGGTC 1178992 Query 128952 GGCAGCCATACCAATCAAATTTTTCACTTTCATTTCCCACACCGTTTTGTAAAGCTCTCT 129011 || ||||| || | ||||||| || ||||||||||| ||||| || || | Sbjct 1178991 CGCGGCCATTTTGATGCACGTTTTCACCGATATCTCCCACACCGTCTTGTACAGGTCGCG 1178932 Query 129012 CACGTGTTTTGGTATTTCTTCAATGTTCTGCACGCTGCCGTTGTTTGCAATAATTTTGTT 129071 | ||| | || ||||| || || ||| | ||||||| |||| |||| ||| Sbjct 1178931 GATGTGCTGCGGAATTTCCTCGATCCGCTGTATCGAACCGTTGTGCGCAAGGATTTGGTT 1178872 Query 129072 TCGCATCTGTTCGTTGTACAAATTCAGTTTGATCAAATCGTCGGTCAAGTATTTGTTTAT 129131 ||| | || | ||| |||| | ||| ||| | || | | ||| | Sbjct 1178871 CTTCATATCGTCATCCCACAGGCCGAGTTCGGTCAGATCCTGCAGCAGATGGTGGTTGAC 1178812 Query 129132 TACTTGAAAGTCACCCGCCAAAACGCGCCGAACGTAAATGTTGTTGGTGAACGGCTCAAA 129191 || || || || |||| || ||||||||| ||| | ||| ||| ||||||| || Sbjct 1178811 CACCTGGAACTCGCCCGACAGCACGCGCCGATTGTAGACGTTCGAAGTGTACGGCTCGAA 1178752 Query 129192 CGATTCATTGTTGCCTAATATTTGAGCCGTTGTCGCGGTGGGCATGTAAGCCACGCA-AA 129250 ||| || |||||||| | ||||| ||||| | ||||| ||||| |||| ||| | Sbjct 1178751 CGACTCGTTGTTGCCCAGAATTTGGGCCGTGGAGGCGGTCGGCATCGGTGCCA-GCAGGA 1178693 Query 129251 GCGAGTTTCGCAAACCGTGCTGTTTAATGTCtttttttAATTGTGTCCAGTCCCACATCG 129310 |||| || || | ||| |||| ||| | || || | | | ||||| ||||| Sbjct 1178692 GCGAATTCCGGATACCATGCTTGGCAATCTTTTCCTTCAGCTCGGCCCAGTTCCACAGGT 1178633 Query 129311 ATGTGGGTGTGTGATTCCACAAGTCGTATTGCAATATACCCAAACTGGCGGGACTGGAAA 129370 || || || | | ||||| |||||| |||| || ||| || | |||| | Sbjct 1178632 CCGTTGGGGTCTTCTCCCACATGTCGTACTGCAGGATTCCCTTGCTCACCGGACAGCCCT 1178573 Query 129371 AGTAGGAATCGTGCACGCCGTAAGCTTTTGCCAATTCGCAACTCGCTTCCAATGCGCCAA 129430 ||| | |||| | |||| ||||| || || || || |||| |||||| Sbjct 1178572 CGTACGTTTCGTACGGACCGTCGCGGGCGGCCAACTCACAGCTAGCCTCCAGAGCGCCAT 1178513 Query 129431 AATAAATTGTTTCGGCAATTTTGGTGTTCAACACTTTGGCCTGGTCGCTTTCGTACGGCA 129490 | || || || || || | ||||| | || || | || ||||||||||| Sbjct 1178512 AGTAGATGGTCTCAAAGATCTGCTGGTTCAGCTTTTGTGCTTCCTCACTTTCGTACGGAT 1178453 Query 129491 TACGCAACATGGCAAATGTGTCGGCCAAACCTTGAATACCCACACCGATGGGTCGATGTT 129550 |||| | || | ||||||| || || | || | |||||| ||||| || Sbjct 1178452 GGCGCATGAGAATGAACGCATCGGCCATTCCCTGCACGCCGATACCGATAGGTCGGTGGC 1178393 Query 129551 TTCTATTGGATTTTTGTGCCGACAACAAGGGATAGTAGTTGATGTCTATAATTTTGTTTA 129610 | ||||| | ||| | || || |||||||||||||| || |||||||| | Sbjct 1178392 GCATGTTGGAACGCTTCGCCTCCGGCACCGGGTAGTAGTTGATGTCGATGATTTTGTTCA 1178333 Query 129611 AATT---CTTGACCACAATTTTCGTTACGTATTTTAACATTTCAAAATTGTACTCGCCTA 129667 || | || || || || | || | || | | | | || | |||| || Sbjct 1178332 GGTTGCGCGTG---ACGATCTTGGCGACCTCCTTCAGCTTCACGAAGTCGTACGTGCGAT 1178276 Query 129668 CATCGATGTCGACAAATTGATTGACACAAATCGAGGCCAAATTGCAGACGGCACTTTCGT 129727 | || || ||||| || | |||||| |||| |||||| || ||| |||||| Sbjct 1178275 C--CGGCCTC-ACAAACATGTTCAGCGCAATCGACGCCAGATTGCACACCGCAATTTCGT 1178219 Query 129728 TTTTGTCACTGTACTCGACAATTTCGGCGCACAAATTACTATTTTTAATGGTGCCCAAAT 129787 || ||||||||| || || | ||||| || || || ||||||| | Sbjct 1178218 CCTTCGACGAGTACTCGACGATCTCCGTGCACAGGTTCGAGCACTTGATCGTGCCCACGT 1178159 Query 129788 GCTTTTGATTACTTTTCATGTTGCAAGCATCTTTGTACATCATGTACGGCGTGCCCGTTT 129847 || || || || ||| |||||| ||||| ||||| | |||||||||| |||||| | Sbjct 1178158 TCTGCTGGTTGCTCTTCCGGTTGCACGCATCCTTGTAGAGCATGTACGGCACGCCCGTCT 1178099 Query 129848 CGACTTGCGTTTCGACAATGGTCCTGA---ACAAGTCTCGAGCCTTGATCTGTCTTACAA 129904 |||| |||| ||| ||| || || ||| || | ||||| | ||| | | | Sbjct 1178098 CGACCTGCGACTCG---ATGATCGCGAACCACAGATCCTGCGCCTTCACCTGCCGGATGA 1178042 Query 129905 ATTTGCCACATTTCTCGTATGCCACATACAGTTGTTCAAATTCTGAGCCGTGTACGGTGT 129964 | || |||||||| || ||||| | ||||| ||| ||| ||| Sbjct 1178041 ACCGACCTTCCTTCTCGTAGCCCGTGTACAGCCGCTCAAACTCTTCGCC--CCACGACTC 1177984 Query 129965 CG--AGCAACGGCGATTCACGCGGACACATCAAACTCCACATTCCATCCGCTTCGACTCG 130022 || ||| || | || |||||||||| | ||||||||| | | ||| || || || Sbjct 1177983 CGACAGCCCGGGGCAGTCGTGCGGACACATAAGGCTCCACATTTCGTTCGCCTCCACCCG 1177924 Query 130023 TTTCATAAACAAATCGGGTACCCACAGGGCGTACAACAAATCTCGCGCTTTTCTATCCTC 130082 ||||| |||| ||| || |||||||| ||||| |||| || ||||| ||||| Sbjct 1177923 CTTCATGAACAGATCCGGCACCCACAGCGCGTAGAACATGTCACGCGCACGGACCTCCTC 1177864 Query 130083 GGCACCCATGTTACGTTTCAGTTCAAGGAAATCGTAAATGTCGGCGTGCCACGGTTCAAC 130142 || |||| ||||| || || || || | | ||| | |||||||| || | Sbjct 1177863 CTTGCCAGTGTTTTTCTTCAGATCGAGAAACTCAAACACATCGCCATGCCACGGCTCGAG 1177804 Query 130143 ATAAATTGCCATTGCGCCCTTCCG---TTTGCCCCCTTGGTCAACGTGGCGCACGGCATT 130199 || || || | || || || ||||| || ||||| || | || | | || Sbjct 1177803 GTAGATGGCGAACGCACCGGGACGCTTGTTGCCGCCCTGGTCCACATACCGGGCCGTGTT 1177744 Query 130200 GTTGTAGACTCGCAACATTGCCTCCAATCCGTTGGCCGTGCCGTTTGTGCTCTCAATGAA 130259 ||||||||| |||| ||| | |||| ||||||| | ||||| |||| | ||||| | Sbjct 1177743 GTTGTAGACACGCAGCATCGGAACCAACCCGTTGGAGATACCGTTCGTGCCCGCAATGTA 1177684 Query 130260 ACTGCCACGAGCCCGAACGTTATGAACGCTTAGACCTATGCCGCCGCCAAATTTTGATAT 130319 | || ||||| | | || ||| | ||||| ||||| ||| | | || || || Sbjct 1177683 CGTACCCTTCGCCCGGATGCAGTGCACGTTCAGACCAATGCCTCCGGCGGACTTGGAGAT 1177624 Query 130320 CAACGCGCAATCGCGT-AGCGTTTCATAAATGCCAACGATACTGTCTTCTTTAATGTTTA 130378 || ||||| | || | ||||| || ||||| || |||||||||| || || ||| Sbjct 1177623 CAGTGCGCACT-GCTTCAGCGTGTCGTAAATTCCCTCGATACTGTCGTCCGACATCGTTA 1177565 Query 130379 GGAGGAAACACGAGGCCAATTGGG 130402 |||| || || || | || ||||| Sbjct 1177564 GGAGAAAGCAGGACGACAGTTGGG 1177541 >seq8899 Length=3132144 Score = 116 bits (128), Expect = 3e-21 Identities = 165/232 (71%), Gaps = 0/232 (0%) Strand=Plus/Minus Query 22215 AAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAAC 22274 ||||||||| ||||| || ||||| | || || || || |||| ||||| || || | Sbjct 384683 AAAGATGCAGATTTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCC 384624 Query 22275 CACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGA 22334 | || || | || || | || |||||||| || ||||| || ||||| || || Sbjct 384623 GTCGGACACGATCGAGAATGTGAAGGCGAAAATTCAGGATAAGGAAGGAATTCCGCCAGA 384564 Query 22335 TCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTA 22394 |||||| ||||| || || ||||| || ||| | |||||| ||| || | || || || Sbjct 384563 TCAACAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGTACGCTTTCGGACTA 384504 Query 22395 CAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 ||||||||| || || || ||| | || | ||| ||||| | || || ||| Sbjct 384503 CAACATTCAGAAGGAGTCGACCCTTCACCTGGTTCTGCGACTTCGTGGTGGT 384452 >seq9240 Length=943838 Score = 111 bits (122), Expect = 1e-19 Identities = 163/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| || || || ||||| | || ||||| || | || ||||| || || || Sbjct 630586 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 630527 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | ||||| | || || | || || || || ||||||||||| || || || || Sbjct 630526 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGAC 630467 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || || |||||||| ||| | |||||| ||||| | ||||| ||| Sbjct 630466 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACGCTGTCCGACTAC 630407 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGT 22446 |||||||| || || || ||| | ||| | || |||| | || || ||| Sbjct 630406 AACATTCAGAAGGAGTCGACCCTCCATCTGGTGCTGCGCCTCCGTGGTGGT 630356 >seq8738 Length=1280009 Score = 105 bits (116), Expect = 6e-18 Identities = 162/231 (70%), Gaps = 0/231 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||||||||| || || || | || || || || |||| | || || || | | Sbjct 1177433 ATGCAAATTTTCGTCAAGACCCTGACTGGAAAGACCATCACGTTGGAGGTTGAGCCTTCG 1177374 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || || | || || | || || ||||| ||||||||||| || || || ||||| Sbjct 1177373 GACACGATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGATCAG 1177314 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||||| || ||||||||||| ||| | || ||| ||| ||| | || ||||||||| Sbjct 1177313 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTTTCGGATTACAAC 1177254 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGGTTTT 22449 || || || || || || | ||| | || | || ||||||| |||||| Sbjct 1177253 ATCCAGAAGGAGTCTACTCTCCATCTGGTCCTTCGTCTGCGCGGTGGTTTT 1177203 Score = 100 bits (110), Expect = 2e-16 Identities = 160/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 22216 AAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACC 22275 |||||||| ||||| || || || | || || || || |||| | || ||||| | Sbjct 1177664 AAGATGCAGATTTTCGTCAAGACCCTTACGGGAAAGACCATCACGTTGGAGGTGGAGCCT 1177605 Query 22276 ACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGAT 22335 | || || | || || | || || ||||| ||||||||||| || || || ||| Sbjct 1177604 TCGGACACGATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGAT 1177545 Query 22336 CAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTAC 22395 || || ||||| || ||||||||||| ||| | || ||| ||| || | || |||||| Sbjct 1177544 CAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCGGATTAC 1177485 Query 22396 AACATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 ||||| || || || || || | ||| | || | || ||||||| || Sbjct 1177484 AACATCCAGAAGGAGTCTACTCTCCATCTGGTCCTTCGTCTGCGCGGTGG 1177435 Score = 84.2 bits (92), Expect = 2e-11 Identities = 153/223 (69%), Gaps = 1/223 (0%) Strand=Plus/Minus Query 22211 TTGTAAAGATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGG 22270 ||| ||| |||||||||||||| || || | ||||| || ||| |||| || || || | Sbjct 1179351 TTGCAAA-ATGCAAATTTTTGTGAAGACACTGACCGGCAAGACGATCACGCTAGACGTCG 1179293 Query 22271 AAACCACCGATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCAC 22330 || |||| || || ||||| ||| ||||| |||| |||||||| ||| Sbjct 1179292 TGGCCTCCGAGACGGTCTTGGATATAAAAAGCAAAATCGAAGAGCGAGAGGGTATAGCAC 1179233 Query 22331 CCGATCAACAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCG 22390 | || || || ||| | || || || || || ||| | || ||| || | | | |||| Sbjct 1179232 CGGACCAGCAGCGTATCATCTTCGCGGGAAAGCAGCTTGAAGATGGGCGGATCATTTCCG 1179173 Query 22391 ATTACAACATTCAAAAAGAATCCACCATACATTTAGTTTTGCG 22433 | |||||||| || | | ||| || || || || || |||| Sbjct 1179172 ACTACAACATCCAGCACGGATCAACGATGCACTTGGTCCTGCG 1179130 >seq9325 Length=2359367 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| ||||| || || || | || || || || ||||||| || || || | | Sbjct 260904 ATGCAGATTTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTCGAGGTCGAGCCTTCG 260963 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 || ||| | || | |||| || || || ||||||||||||||||| || ||||| Sbjct 260964 GACACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 261023 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 || ||| | || || || || || ||| | ||||| || || | ||||| |||||| Sbjct 261024 CAGCGTTTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACAAC 261083 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445 || || || ||||| ||| | || || ||| | || | |||||||| Sbjct 261084 ATCCAGAAGGAATCGACCCTTCACTTGGTTCTTCGTCTTCGCGGAGG 261130 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419678932747480