Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq8738 170 4e-37 seq9325 163 5e-35 seq9254 163 5e-35 seq9240 152 9e-32 seq9207 89.7 9e-13 >seq8738 Length=1280009 Score = 170 bits (188), Expect = 4e-37 Identities = 175/229 (76%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| ||||| || || | |||| || || || ||||| || |||||||| ||||| | Sbjct 1177433 TTCCACCGCGCAGACGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCCG 1177492 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 | || || | |||||||| | |||||| ||||| || ||||| | || || || || | Sbjct 1177493 AAAGAGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAG 1177552 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 | || || |||||||| |||||||| ||||| || ||| || ||||| | | || | Sbjct 1177553 GGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATCGTGTCCGAAGGCTCCA 1177612 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | ||||| |||||||| |||||||| |||||||||||||| |||||||| Sbjct 1177613 CCTCCAACGTGATGGTCTTTCCCGTAAGGGTCTTGACGAAAATCTGCAT 1177661 Score = 159 bits (176), Expect = 6e-34 Identities = 177/236 (75%), Gaps = 0/236 (0%) Strand=Plus/Plus Query 68227 TTTAATTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTAT 68286 ||||| || ||||| || || | |||| || || || ||||| || |||||||| | Sbjct 1177199 TTTAAAAACCACCGCGCAGACGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGT 1177258 Query 68287 AATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGT 68346 |||| || || || | |||||||| | |||||| ||||| || ||||| | || || | Sbjct 1177259 AATCCGAAAGGGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGAT 1177318 Query 68347 CGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTG 68406 | || || || || |||||||| |||||||| ||||| || ||| || ||||| | | Sbjct 1177319 CTGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATCGTGTCCGAAG 1177378 Query 68407 ATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATT 68462 || || ||||| |||||||| ||||| || |||||||||||||| || |||||| Sbjct 1177379 GCTCAACCTCCAACGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAAATTTGCATT 1177434 >seq9325 Length=2359367 Score = 163 bits (180), Expect = 5e-35 Identities = 177/235 (75%), Gaps = 0/235 (0%) Strand=Plus/Minus Query 68232 TTTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCG 68291 |||||||||||||| || | |||||||| || || || || || |||||||| || ||| Sbjct 261133 TTTCCTCCGCGAAGACGAAGAACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCG 261074 Query 68292 GAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGT 68351 || || || | || || || | |||||| || ||||| || | | || || || || Sbjct 261073 GACAGAGTACGTCCGTCCTCCAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGG 261014 Query 68352 GGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCT 68411 ||||| || |||||||| || ||||| ||||||||| |||||||||||| | | || Sbjct 261013 GGAATACCCTCCTTGTCCTGGATCTTAGCCTTGACGTTCTCGATGGTGTCCGAAGGCTCG 260954 Query 68412 ACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTATGC 68466 || || | |||||||| || || || || ||||| ||||| ||||||||| ||| Sbjct 260953 ACCTCGAGAGTGATGGTCTTGCCAGTCAGCGTCTTCACGAAAATCTGCATTCTGC 260899 >seq9254 Length=4138565 Score = 163 bits (180), Expect = 5e-35 Identities = 353/522 (68%), Gaps = 12/522 (2%) Strand=Plus/Plus Query 268209 CCCCAGTTGCAATCACAAAGTCCTCTGGCTCAGGAGACTGGAGCATTTTCCACATTGCTT 268268 ||||||| || || ||||| || || || | ||| | |||| |||||| || | Sbjct 2756294 CCCCAGTGGCGATGACAAAATCTTCCGGTTTGTCCTGCTGCATCATTAGCCACATGGCCT 2756353 Query 268269 CGACATAGTCCCGCGCATGGCCCCAATCGCGCTTTGCGTCCATGTTCCCGAGGAACAGGC 268328 | || ||||| ||||| ||||| || ||||| | ||| | || || || || || Sbjct 2756354 CCACGTAGTCTTTGGCATGCCCCCAGTCACGCTTGGAGTCAAGATTGCCCAGCTCCAAGC 2756413 Query 268329 ATTTCTGCTTGCCGAGC----TTCACGCGTGCAA-GACCGCGAGTGATTTTTCGGGTCAC 268383 | | ||||| ||| ||| || ||| || ||||| | | || || ||||| || Sbjct 2756414 ACTCCTGCTGGCCAAGCGAGATTTTCGC---CACTGACCGGG--TTATCTTGCGGGTGAC 2756468 Query 268384 GAACGTCTCGCCACGTAGAGGGCTCTCGTGGTTGAAGAGGATGCCGTTGCACGCGAACAT 268443 || |||| || || | || ||||||||| || || ||||| ||||| || ||||| Sbjct 2756469 AAAATTCTCTCCCCGCCGCGGAGACTCGTGGTTAAAAAGAATGCCATTGCAGGCAAACAT 2756528 Query 268444 GCCATATGCCTCACGGTAGTTCACGACCGTCCAGTATGCAAACATCTTTGCAACTGCGTA 268503 | | || || || ||||| || | || ||||||| | ||||||| ||| ||||| Sbjct 2756529 GTCGTACGCTTCGCGGTAATTTATCACAATCCAGTAGCCGTACATCTTGGCACAAGCGTA 2756588 Query 268504 CGGAGAACGTGGATGGAAGGGCGTCGTGATCTTTTGAGGGATTTCTCGGACTTTGCCAAA 268563 ||| ||||| |||| |||||| || | || || || |||| || ||||| | Sbjct 2756589 CGGCGAACGCGGATAGAAGGGTGTTTTTTCATTCTGTGGCGTTTCCACCACCTTGCCGTA 2756648 Query 268564 GAGCTCGGAGGTCGATGCTTGGTAGAACTTTGTTGTTTTTTCGAGACCGCA-GATTCGGA 268622 ||||| || || ||||| |||||||| | ||||| | ||| || | | |||| Sbjct 2756649 AAGCTCCGAAGTGGATGCCTGGTAGAATCGAACCGACTTTTCCA-ACCCCACGGTGCGGA 2756707 Query 268623 TTGCCTCGAGCAAACGAAGAGTTCCCATGCCATCCACGTCCGCTGTATACTCCGGCATCT 268682 | || || ||||| || || ||||| | ||||||| || || || || || || | Sbjct 2756708 TGGCGTCCAGCAAGCGCAGTGTTCCGACCGCATCCACCTCGGCCGTGTATTCGCTCAAAT 2756767 Query 268683 CGAATGACACCTGGACATGGCTCTGGGCGCCCAGGTTATAAA 268724 |||| || | | ||||| || ||||| |||||||||||| Sbjct 2756768 CGAAGGAAATTTTCACATGACTTTGGGCAGCCAGGTTATAAA 2756809 >seq9240 Length=943838 Score = 152 bits (168), Expect = 9e-32 Identities = 170/227 (75%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || ||||||| |||| || || || ||||| || || ||||| || ||||| Sbjct 630357 CCACCACGGAGGCGCAGCACCAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGAC 630416 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| |||||||| || || | || ||||| || || Sbjct 630417 AGCGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGG 630476 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||| || |||||| || || | | || || Sbjct 630477 ATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACC 630536 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | ||| ||||| || ||||||||||| |||||||| |||||||| Sbjct 630537 TCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 630583 >seq9207 Length=1443628 Score = 89.7 bits (98), Expect = 9e-13 Identities = 131/183 (72%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 31701 CACACCGCCGTTTCGTCCGTAGAAGTGTATTCGACAATCTCGGCACAAAGATTGCTGCCC 31760 |||||||| |||||||| | || | ||| ||||| ||||| | || || || || | Sbjct 1178234 CACACCGCAATTTCGTCCTTCGACGAGTACTCGACGATCTCCGTGCACAGGTTCGAGCAC 1178175 Query 31761 GTGATGGTGCCGGCATTGGACTGCATGTTCTTCACGTT-CACGCTGTCCTTGTTGAGCAC 31819 |||| ||||| | || ||| || ||||| ||| ||||| ||||||| ||||| Sbjct 1178174 TTGATCGTGCCCACGTTCTGCTGGTTGCTCTTCCGGTTGCACGCA-TCCTTGTAGAGCAT 1178116 Query 31820 GTAAGGCATGCCCGTCTCGATCTGCGTGATGATCATCGCATTCCAGACATCGCGCGCTTT 31879 ||| |||| ||||||||||| ||||| ||| ||||| ||| | ||| |||| || Sbjct 1178115 GTACGGCACGCCCGTCTCGACCTGCGACTCGATGATCGCGAACCACAGATCCTGCGCCTT 1178056 Query 31880 GAC 31882 || Sbjct 1178055 CAC 1178053 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921511897474240