Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_008953.1 Length=3935 Score E Sequences producing significant alignments: (Bits) Value seq9181 100 7e-18 seq9069 80.6 7e-12 >seq9181 Length=525874 Score = 100 bits (110), Expect = 7e-18 Identities = 211/312 (68%), Gaps = 7/312 (2%) Strand=Plus/Minus Query 3198 CTGCGAGCTGCTAAACTTTGTCAACGTTGTCGCACAGATATGCTTCATGAATGCCTTTAT 3257 ||||||| | | |||||||||||||| ||| ||||| | ||||||| | ||| | Sbjct 20183 CTGCGAGGCGTTGAACTTTGTCAACGTGCTCGGTCAGATCTACTTCATGGACTTCTTCCT 20124 Query 3258 AGGCGAAGACTTTTTGTTGTACGGAATCTATGTTACCTTCTTCAACCAG--GAAGCCGCC 3315 | || || || | | |||||| | | | || ||||| | || | ||||| Sbjct 20123 CGACGGCGAGTTCTCGACGTACGGTAGCGACGTGGTGCGCTTCACCGAGATGGAGCCGGA 20064 Query 3316 CATCCGAACATGACGAACCCCATGAAGCGAGTCTTTCCAACAATCACTCGATGTACTTTT 3375 || | || ||| ||| ||| ||| || || || | | |||| ||||| || Sbjct 20063 G----GAGCGTGGCGA-CCCGATGGCGCGGGTGTTCCCGAAAGTCACCAAGTGTACCTTC 20009 Query 3376 CACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTCCCGGAG 3435 ||||| |||||| | || || | || | || | ||| || | ||| | || ||| | Sbjct 20008 CACAAGTACGGTGCGTCCGGAAGCGTGCAGAAGTTCGACGGTTTGTGCGTGCTGCCGCTG 19949 Query 3436 AACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGTTCTACGTGCTAGCCATC 3495 ||| | |||||||||||||||||| | ||||| |||||||||||| | |||| ||||| Sbjct 19948 AACATCGTCAACGAGAAGATCTACGTGTTCCTGTGGTTCTGGTTCATCCTGCTCACCATC 19889 Query 3496 ATCAGCGGTATC 3507 | | ||| ||| Sbjct 19888 CTGACCGGCATC 19877 >seq9069 Length=72923 Score = 80.6 bits (88), Expect = 7e-12 Identities = 84/109 (77%), Gaps = 1/109 (1%) Strand=Plus/Plus Query 3370 ACTTTTCACAAATACGGTCCTTCGGGCTCCCTGGAAAACTACGAGGGACTCTGCATCCTC 3429 |||||| |||| |||||||| | ||||| | | || |||| | ||||||||| | Sbjct 26576 ACTTTT-ACAAGTACGGTCCGACCGGCTCGATTCAGAAACACGACGCACTCTGCATTATG 26634 Query 3430 CCGGAGAACGTGGTCAACGAGAAGATCTACATTTTCCTCTGGTTCTGGT 3478 || ||||||| ||||||||||||||| || || ||||||||||||| Sbjct 26635 GCGCTGAACGTGATCAACGAGAAGATCTTCACGTTTCTCTGGTTCTGGT 26683 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 12478690692000