Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14]
9,592 sequences; 220,777,669 total letters
Query= NC_009011.2
Length=131331
Score E
Sequences producing significant alignments: (Bits) Value
seq8899 98.7 8e-16
seq8738 91.5 1e-13
seq9240 87.8 2e-12
seq9325 86.0 5e-12
>seq8899
Length=3132144
Score = 98.7 bits (108), Expect = 8e-16
Identities = 159/229 (69%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213
|||| ||||| |||| || ||| | || | || || || || ||||||||||| ||
Sbjct 384451 TACCACCACGAAGTCGCAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCG 384510
Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273
| ||||| ||| || || || ||||| ||| |||| ||||||||||| || || |
Sbjct 384511 AAAGCGTACGGCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGTTGATCTGGCG 384570
Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333
|||| ||||| || || ||| || || | | || | ||||| | | ||||
Sbjct 384571 GAATTCCTTCCTTATCCTGAATTTTCGCCTTCACATTCTCGATCGTGTCCGACGGCTCGA 384630
Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
| || | ||| | || ||||| || || ||||| || |||||||||||
Sbjct 384631 CCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACGAAAATCTGCAT 384679
>seq8738
Length=1280009
Score = 91.5 bits (100), Expect = 1e-13
Identities = 148/211 (70%), Gaps = 4/211 (2%)
Strand=Plus/Plus
Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233
|| || || ||||| ||| | | || |||||||| ||| || | || |||||||
Sbjct 1179136 ACCAAGTGCATCGTTGATCCGTGCTGGATGTTGTAGTCGGAAATGATCCGCCCATCTTCA 1179195
Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293
|| || || || ||| |||||| |||||| |||||||| | || || ||| || |
Sbjct 1179196 AGCTGCTTTCCCGCGAAGATGATACGCTGCTGGTCCGGTGCTATACCCTCTCGCTCTTCG 1179255
Query 114294 ATCTTTTGTTTTAGCTGTTCAA--CGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTT 114351
|| || ||||| | | ||| | || |||| || ||||||| | || | ||| |
Sbjct 1179256 ATTTTGCTTTTTA--TATCCAAGACCGTCTCGGAGGCCACGACGTCTAGCGTGATCGTCT 1179313
Query 114352 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|||||||||| || || |||||||| |||||
Sbjct 1179314 TGCCGGTCAGTGTCTTCACAAAAATTTGCAT 1179344
Score = 86.0 bits (94), Expect = 5e-12
Identities = 137/197 (70%), Gaps = 0/197 (0%)
Strand=Plus/Plus
Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245
||||| || || || ||||||||||| | |||||| |||||| || || || ||
Sbjct 1177465 GTAGACTCCTTCTGGATGTTGTAATCCGAAAGAGTACGGCCATCTTCCAGCTGCTTGCCG 1177524
Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305
|| ||||||||||||| || || ||||| || || || ||||| |||||| ||
Sbjct 1177525 GCAAAGATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTC 1177584
Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365
| | |||| ||||| | | || || |||| || | || || || || || ||
Sbjct 1177585 ACATTCTCAATCGTGTCCGAAGGCTCCACCTCCAACGTGATGGTCTTTCCCGTAAGGGTC 1177644
Query 114366 TTTACAAAAATCTGCAT 114382
|| || |||||||||||
Sbjct 1177645 TTGACGAAAATCTGCAT 1177661
>seq9240
Length=943838
Score = 87.8 bits (96), Expect = 2e-12
Identities = 156/228 (68%), Gaps = 0/228 (0%)
Strand=Plus/Plus
Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214
||| ||||| || | || || | ||| | || || || || ||||||||||| |||
Sbjct 630356 ACCACCACGGAGGCGCAGCACCAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGA 630415
Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274
|| || || ||| || || || || || ||| |||| |||||||| |||||||| ||
Sbjct 630416 CAGCGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGG 630475
Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334
||||| || ||||| ||||| || | | || | || || | || |||||
Sbjct 630476 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 630535
Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
|| | ||| | || || || || || ||||| || || ||||||||
Sbjct 630536 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 630583
>seq9325
Length=2359367
Score = 86.0 bits (94), Expect = 5e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Minus
Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232
||| || || | || ||||| || || |||||||| ||| || |||||| || ||
Sbjct 261113 AACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTC 261054
Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292
|| || || |||||| |||| | |||||| || || || ||||| || || |||||
Sbjct 261053 CAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTG 260994
Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352
||||| || | | || | |||||| | | ||||| || | || | || ||
Sbjct 260993 GATCTTAGCCTTGACGTTCTCGATGGTGTCCGAAGGCTCGACCTCGAGAGTGATGGTCTT 260934
Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382
||| ||||| || || || |||||||||||
Sbjct 260933 GCCAGTCAGCGTCTTCACGAAAATCTGCAT 260904
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 420085285238304
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |