Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_009011.2 Length=131331 Score E Sequences producing significant alignments: (Bits) Value seq8899 98.7 8e-16 seq8738 91.5 1e-13 seq9240 87.8 2e-12 seq9325 86.0 5e-12 >seq8899 Length=3132144 Score = 98.7 bits (108), Expect = 8e-16 Identities = 159/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 114154 TACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGC 114213 |||| ||||| |||| || ||| | || | || || || || ||||||||||| || Sbjct 384451 TACCACCACGAAGTCGCAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCG 384510 Query 114214 TCATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAG 114273 | ||||| ||| || || || ||||| ||| |||| ||||||||||| || || | Sbjct 384511 AAAGCGTACGGCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGTTGATCTGGCG 384570 Query 114274 GAATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGA 114333 |||| ||||| || || ||| || || | | || | ||||| | | |||| Sbjct 384571 GAATTCCTTCCTTATCCTGAATTTTCGCCTTCACATTCTCGATCGTGTCCGACGGCTCGA 384630 Query 114334 CGTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 | || | ||| | || ||||| || || ||||| || ||||||||||| Sbjct 384631 CCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACGAAAATCTGCAT 384679 >seq8738 Length=1280009 Score = 91.5 bits (100), Expect = 1e-13 Identities = 148/211 (70%), Gaps = 4/211 (2%) Strand=Plus/Plus Query 114174 ACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCA 114233 || || || ||||| ||| | | || |||||||| ||| || | || ||||||| Sbjct 1179136 ACCAAGTGCATCGTTGATCCGTGCTGGATGTTGTAGTCGGAAATGATCCGCCCATCTTCA 1179195 Query 114234 AGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCA 114293 || || || || ||| |||||| |||||| |||||||| | || || ||| || | Sbjct 1179196 AGCTGCTTTCCCGCGAAGATGATACGCTGCTGGTCCGGTGCTATACCCTCTCGCTCTTCG 1179255 Query 114294 ATCTTTTGTTTTAGCTGTTCAA--CGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTT 114351 || || ||||| | | ||| | || |||| || ||||||| | || | ||| | Sbjct 1179256 ATTTTGCTTTTTA--TATCCAAGACCGTCTCGGAGGCCACGACGTCTAGCGTGATCGTCT 1179313 Query 114352 TGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 |||||||||| || || |||||||| ||||| Sbjct 1179314 TGCCGGTCAGTGTCTTCACAAAAATTTGCAT 1179344 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 114186 GTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTCAAGTTGTTTACCA 114245 ||||| || || || ||||||||||| | |||||| |||||| || || || || Sbjct 1177465 GTAGACTCCTTCTGGATGTTGTAATCCGAAAGAGTACGGCCATCTTCCAGCTGCTTGCCG 1177524 Query 114246 GCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGCAATCTTTTGTTTT 114305 || ||||||||||||| || || ||||| || || || ||||| |||||| || Sbjct 1177525 GCAAAGATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTC 1177584 Query 114306 AGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTTGCCGGTCAGAGTT 114365 | | |||| ||||| | | || || |||| || | || || || || || || Sbjct 1177585 ACATTCTCAATCGTGTCCGAAGGCTCCACCTCCAACGTGATGGTCTTTCCCGTAAGGGTC 1177644 Query 114366 TTTACAAAAATCTGCAT 114382 || || ||||||||||| Sbjct 1177645 TTGACGAAAATCTGCAT 1177661 >seq9240 Length=943838 Score = 87.8 bits (96), Expect = 2e-12 Identities = 156/228 (68%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 114155 ACCGCCACGTAGTCTCAAAACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCT 114214 ||| ||||| || | || || | ||| | || || || || ||||||||||| ||| Sbjct 630356 ACCACCACGGAGGCGCAGCACCAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGA 630415 Query 114215 CATAGTACGAGAATCTTCAAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGG 114274 || || || ||| || || || || || ||| |||| |||||||| |||||||| || Sbjct 630416 CAGCGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGG 630475 Query 114275 AATGCCTTCTTTGTCGGCAATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGAC 114334 ||||| || ||||| ||||| || | | || | || || | || ||||| Sbjct 630476 GATGCCCTCCTTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGAC 630535 Query 114335 GTCCACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 || | ||| | || || || || || ||||| || || |||||||| Sbjct 630536 CTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCAT 630583 >seq9325 Length=2359367 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 114173 AACTAAATGTATCGTAGATTCTTTTTGAATGTTGTAATCGCTCATAGTACGAGAATCTTC 114232 ||| || || | || ||||| || || |||||||| ||| || |||||| || || Sbjct 261113 AACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTC 261054 Query 114233 AAGTTGTTTACCAGCGTAGATGAGACGCTGTTGGTCCGGAGGAATGCCTTCTTTGTCGGC 114292 || || || |||||| |||| | |||||| || || || ||||| || || ||||| Sbjct 261053 CAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTG 260994 Query 114293 AATCTTTTGTTTTAGCTGTTCAACGGTGTCGGTGGATTCGACGTCCACGGTCACCGTTTT 114352 ||||| || | | || | |||||| | | ||||| || | || | || || Sbjct 260993 GATCTTAGCCTTGACGTTCTCGATGGTGTCCGAAGGCTCGACCTCGAGAGTGATGGTCTT 260934 Query 114353 GCCGGTCAGAGTTTTTACAAAAATCTGCAT 114382 ||| ||||| || || || ||||||||||| Sbjct 260933 GCCAGTCAGCGTCTTCACGAAAATCTGCAT 260904 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 420085285238304