Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq9207 553 3e-152 seq9254 192 1e-43 >seq9207 Length=1443628 Score = 553 bits (612), Expect = 3e-152 Identities = 1289/1904 (68%), Gaps = 90/1904 (5%) Strand=Plus/Minus Query 243735 CCACGCTGAACTGGA-CGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTC 243793 |||| | ||||||| || || | ||||| | |||||| | ||| ||||||||||| ||| Sbjct 1179160 CCACCGTAAACTGGATCGCGTTC-ACGGCCGGCTTGGTGCGCAGATAGTACATGCCCGTC 1179102 Query 243794 TTGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTT 243853 || || || | |||| ||| || ||| || | ||||||||| | | || || Sbjct 1179101 TTCAGGCCCATCTTCCAGCCGTAGAAGTGAATCGACGTCAGCTTGC----CGT-AG-TTC 1179048 Query 243854 GGGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCCCGC 243913 || ||| || || ||| | |||| |||||| ||| |||| ||| | |||| Sbjct 1179047 GGTTCGGCCACGT---GAATG---TTGAACGACTGGGACTGATCGATGAACGCACCCCGG 1178994 Query 243914 TCTGCGGCCATGGTGATG-AGGTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGG 243972 || |||||||| ||||| | || ||| |||||||| || |||||||||| | | Sbjct 1178993 TCCGCGGCCATTTTGATGCACGTT-TTCACCGATATCTCCCACACCGTCTTGTACAGGTC 1178935 Query 243973 CTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTG 244032 || ||||| || | | ||||| ||| | ||| || ||||| | | || || Sbjct 1178934 GCGGATGTGCTGCGGAATTTCCTCGATCCGCTGTATCGAACCGTTGTGCGCAAGGATTTG 1178875 Query 244033 GGTGCGCATGTTATCGTTCCACAGGCCCAAG-CGCTCCAGCGCCTCGACCAGGTGCCTGT 244091 | | ||| | || | ||||||||| | || || || ||| | ||| || || Sbjct 1178874 GTTCTTCATATCGTCATCCCACAGGCCGAGTTCGGTC-AGATCCTGCAGCAGATGGTGGT 1178816 Query 244092 TCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCT 244151 | |||||||| ||||| |||||||||||||| || | ||||| ||| || ||||| Sbjct 1178815 TGACCACCTGGAACTCGCCCGACAGCACGCGCCGATTGTAGACGTTCGAAGTGTACGGCT 1178756 Query 244152 CGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACACCA 244211 ||| ||| |||||||||| || || |||||| || |||||||| || | || || Sbjct 1178755 CGAACGACTCGTTGTTGCCCAGAATTTGGGCCGTGGAGGCGGTCGGCATCGGTGCCAGCA 1178696 Query 244212 GCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCACA 244271 | || |||| | || ||| | || | |||||| ||||| ||||| Sbjct 1178695 GGAGCGAATTCCGGATACCATGCTTGGCAATCTTTTCCTTCAGCTCGGCCCAGTTCCACA 1178636 Query 244272 TGCCCGA-GAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCTG 244330 | ||| | |||| || | ||||||||| ||||||| | |||||||| Sbjct 1178635 GGTCCGTTGGGGTCTTCTC----------CCACATGTCGTACTGCAGGATTCCCTTGCTC 1178586 Query 244331 ACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTCG 244390 || || | ||||||||| || ||| ||||||||||| ||||| || |||||| | Sbjct 1178585 ACCGGACAGCCCTCGTACGTTTCGTACGGACCGTCGCGGGCGGCCAACTCACAGCTAGCC 1178526 Query 244391 TCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTTGCCG 244450 || || ||| | |||||||||||||| |||||| || ||||| | | || | || Sbjct 1178525 TCCAGAGCGCCATAGTAGATGGTCTCAAAGATCTGCTGGTTCAGCTTTTGTGCTT--CCT 1178468 Query 244451 CAGGT--GAAGGGGATGCCCATCATCATGAAGACGTCGGCCAGTCCCTGCACGCCGATGC 244508 || | | | || || ||| | ||||| | ||||||| ||||||||||||||| | Sbjct 1178467 CACTTTCGTACGGATGGCGCATGAGAATGAACGCATCGGCCATTCCCTGCACGCCGATAC 1178408 Query 244509 CGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGTTGCCGT 244568 |||| |||| ||| ||| ||||||| ||| | || || ||||| ||||| ||||| || Sbjct 1178407 CGATAGGTCGGTGGCGCATGTTGGAACGCTTCGCCTCCGGCACCGGGTAGTAGTTGATGT 1178348 Query 244569 CGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCTGAAAGT 244628 |||| | ||||| |||||||| |||| || | |||| || |||| | |||| Sbjct 1178347 CGATGATTTTGTTCAGGTTGCGCGTGACGATCTTGGCGACCTCCTTCAGCTTCACGAAGT 1178288 Query 244629 CGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGACGCTGG 244688 ||||| || | ||||| || |||||||||| ||| || || | | Sbjct 1178287 CGTAC--GT-GCGATCC--------GG----CCTCACAAACATGTTCAGCGCAATCGACG 1178243 Query 244689 CCAGGTTGCAGACGGCCA---CCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGCAGA 244745 |||| ||||| || || | | |||| ||| | ||||| ||| ||||| ||||| | Sbjct 1178242 CCAGATTGCACACCGCAATTTCGTCCTTCGAC---GAGTACTCGACGATCTCCGTGCACA 1178186 Query 244746 GGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGCGTCCT 244805 |||| ||||||||| ||||||| || ||| || ||| ||| |||||| || |||| Sbjct 1178185 GGTTCGAGCACTTGATCGTGCCCACGTTCTGCTGGTTGCTCTTCCGGTTGCACGCATCCT 1178126 Query 244806 TGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGA-CGCTGTTCCAGAGG 244864 ||||||||||| | ||| | || ||||||| ||| | ||| || ||| | ||| || Sbjct 1178125 TGTAGAGCATGTACGGCACGCCCGTCTCGACCTGCGACTCGATGATCGC-GAACCACAGA 1178067 Query 244865 TCCCTAGCCTTGACCGTCCTGC-GAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAGGGC 244923 ||| ||||| ||| || | || || || || |||||||| |||||||| Sbjct 1178066 TCCTGCGCCTTCACCTGCCGGATGAACCGA-CCTTCCTTCTCGTAGCCCGTGTACAGCCG 1178008 Query 244924 CTCGAACTCGGGGCCCCA-GACCTCGTCTAGGCCGGGGCACGACGC-CGGGCACATGAGA 244981 ||| ||||| |||||| ||| || | || |||||||| | || ||| ||||| || Sbjct 1178007 CTCAAACTCTTCGCCCCACGACTCCGAC-AGCCCGGGGCA-GTCGTGCGGACACATAAGG 1177950 Query 244982 CTCCAC---TCGC-CGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGC 245037 |||||| ||| |||| ||| |||| || |||||| || || || | ||| || || Sbjct 1177949 CTCCACATTTCGTTCGCC-TCC---ACCCGCTTCATGAACAGATCCGGCACCCACAGCGC 1177894 Query 245038 CTGGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAA 245097 | ||| | ||| | | | ||| ||| ||||||||| ||| |||| || | ||| Sbjct 1177893 GTAGAACATGTCACGCGCACGGACCTCCTCCTTGCCAGTGTTTTTCTTCAGATCGAGAAA 1177834 Query 245098 GTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTT 245157 ||||| || ||| | ||||| ||||| | ||||| |||| || ||||| |||||||| Sbjct 1177833 CTCAAACACATCGCCATGCCACGGCTCGAGGTAGATGGCGAACGCACCGGGACGCTTGTT 1177774 Query 245158 GCCTCCCTGGTCCACCATCCTCTCGAGC----GCGTTGAAGATGCGCAGGGTAGGCACTA 245213 ||| |||||||||| ||| | || || |||| ||| ||||| | || || | Sbjct 1177773 GCCGCCCTGGTCCA-CATAC---CGGGCCGTGTTGTTGTAGACACGCAGCATCGGAACCA 1177718 Query 245214 TGCCGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGA 245273 ||||| ||| ||||| |||||| ||||| | ||||| ||| || | | | Sbjct 1177717 ACCCGTTGGAGATACCGTTCGTGCCCGCAATGTACGTACCCTTCGCCCGGATGCAGTGCA 1177658 Query 245274 TGGACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTG 245333 | || || | || |||||| ||||||||| || ||||| ||| | ||||| Sbjct 1177657 CGTTCAGACCAATGCCTCCGGCGGACTTGGAGATCAGTGCGCACTGCTTCAGCGTGTCGT 1177598 Query 245334 CTATGCCCTCCATGCT---GTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGG 245390 || ||||| || || ||||||| || ||| || ||||||||||| ||||| |||| Sbjct 1177597 AAATTCCCTCGATACTGTCGTCCGACATC--GTT-AGGAGAAAGCAGGACGACAGTTGGG 1177541 Query 245391 GCTTGGGGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTAGCGGCTCGAGA 245450 || | || || |||| || || |||||| |||||||| || ||| | Sbjct 1177540 GCCGCTGCGTGGCCGCCGCAAACATGGTCGGCGAGGCGTGCGTAAAGTATCGCTCCGAAA 1177481 Query 245451 GGAACCCGTACGTCTGGAGCAGAGCGTCGATGTTGTCGCCGTGGATCTGCAGGGCGCACC 245510 | || |||||| | || || ||||||| |||||||||||| | ||| | Sbjct 1177480 GCAAATTGTACGTTTCGATTGCCGCATCGATGTCCTCGCCGTGGATCCCGATGGCAACGC 1177421 Query 245511 TCATGAGGGTGTGCTG-GGGCGT--CTCGATGGGTCCCTCGGGTCCCTTGAGCATGTAGG 245567 ||| || ||||||| || ||| |||| |||| | ||| |||| ||||| Sbjct 1177420 GCATCAGCATGTGCTGCGGTCGTTCGACGATCTTGCCCTTG---ATCTTCAGCAGGTAGG 1177364 Query 245568 AGCGCTCGAGCGTCTTGAACCCAAAGTACGAGTAGCCAAAGTCG 245611 | || |||||||| ||||| ||||| || ||| ||||||||| Sbjct 1177363 ACCGTTCGAGCGTTTTGAAGCCAAAATAATTGTACCCAAAGTCG 1177320 >seq9254 Length=4138565 Score = 192 bits (212), Expect = 1e-43 Identities = 309/438 (71%), Gaps = 11/438 (3%) Strand=Plus/Minus Query 42609 CTGTTCAAGGCCATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAAC 42668 |||||||| ||||| || ||| | || || | ||||||||||| |||||||| || ||| Sbjct 2197472 CTGTTCAATGCCATCGAAACGCTACCGTGTGTGAAGAAGAAGGCTGACTGGGCACTGAAC 2197413 Query 42669 TGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAG 42728 ||||| ||| | || | ||||||||| | | || || ||| ||||||||||| Sbjct 2197412 TGGATTTCGAGCAAGAAAGCCAACTTCGGCGAGCGTGTTGTCGCGTTTGCCGCCGTCGAG 2197353 Query 42729 GGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGA-AGGTGTCGAT 42787 || || |||||| ||| ||| ||| | ||||||||||| ||| || ||| | ||| Sbjct 2197352 GGAATTTTCTTCAGCGGCAGCTTTGCCGCTATCTTCTGGCTTAAGAAGCGAGGACT-GAT 2197294 Query 42788 GCCCGGACTCACCTTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTT 42847 ||| || | |||||||||||||| || || | |||||||| |||| | ||||| Sbjct 2197293 GCCAGGCTTGACCTTCTCGAACGAGCTGATTTCGCGTGACGAGGGCTTGCACTGTGACTT 2197234 Query 42848 TGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCACAAGCCCTCGAAGGAGCGGGTCCGGGC 42907 ||| ||||| ||||| | |||| || ||||| || ||||| || | | Sbjct 2197233 TGCTTGCCTTATGTTC---AAATACCTGGTTCAAAAGCCGACGCGCGAGCGTGT---GAC 2197180 Query 42908 CATCATCA--CG-GAGGCCGTGGAGATCGAGAAGGAGTTCCTCACGCAGTCGCTGCCCGT 42964 | ||||| || || || |||| ||||| |||||||||| || || ||||||| || Sbjct 2197179 TAGCATCATTCGCGATGCGGTGGTAATCGAACAGGAGTTCCTTACCAAGGCGCTGCCAGT 2197120 Query 42965 GTCCCTGGTCGGCATGAACCACGACCTCATGTGCAAGTACATCCAGTACGTCGCCGACCA 43024 || | ||||||||| ||||| |||| |||||||| ||| ||| ||||||| Sbjct 2197119 CGATATGCTGGGCATGAACTGTGACCTGATGTCGCAGTACATCGAGTTCGTTGCCGACCG 2197060 Query 43025 TCTCCTGTGCCAGATGGG 43042 || ||| | || |||| Sbjct 2197059 GCTGCTGGTCGAGTTGGG 2197042 Score = 104 bits (114), Expect = 4e-17 Identities = 177/253 (70%), Gaps = 8/253 (3%) Strand=Plus/Minus Query 42335 CTGGACCGCCGAGGAGATTGACCTGGCCAAGGACACGGCCGGCTGGGAGTCACTGTCTGA 42394 |||||| | |||||| | ||||| | ||||||| | | ||||||||| || ||| Sbjct 2197825 CTGGACGGTAGAGGAGGTAGACCTCTCGAAGGACATGAAGGACTGGGAGTC---GT-TGA 2197770 Query 42395 GAACGA---AAAGTTT-TTCCTCAAAAACATACTGGCCTTCTTCGCCGCCTCTGACGGCA 42450 | ||| || || ||| || || | || || ||||||||||| || ||||| | Sbjct 2197769 AACCGAGCGAACGTCACTTCATCTCGCACGTGCTCGCTTTCTTCGCCGCATCGGACGGAA 2197710 Query 42451 TAGTCAATGAGAACCTGGCCACCAGGTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCT 42510 | ||||| ||||| |||| | | |||| | || |||||| || ||||||| Sbjct 2197709 TCGTCAACGAGAATCTGGTCGAACGATTCAGCCAGGAAGTGCAGGTGACCGAAGCGCGCT 2197650 Query 42511 GCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACGCCAAACTGC 42570 ||||||| || |||||||| || || || ||||| ||| ||| ||||| || ||| Sbjct 2197649 GCTTCTATGGTTTCCAGATCGCGATGGAAAACGTCCACAGCGAGATGTACTCCCTGCTGA 2197590 Query 42571 TCAACACGTACAT 42583 || |||||||||| Sbjct 2197589 TCGACACGTACAT 2197577 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944225973729920