Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_010191.2 Length=186713 Score E Sequences producing significant alignments: (Bits) Value seq9254 123 3e-23 seq9207 107 2e-18 seq9243 104 3e-17 seq9217 93.3 5e-14 >seq9254 Length=4138565 Score = 123 bits (136), Expect = 3e-23 Identities = 281/413 (68%), Gaps = 10/413 (2%) Strand=Plus/Minus Query 8526 TATCAAGCATCTTCCTCGGAGATGTTTGGTAAAGTTAGGGAATCCCCTCAAAATGAGGAG 8585 || || ||||| | |||||| | | || || || |||| | || || ||||| | Sbjct 2756672 TACCAGGCATCCACTTCGGAGCTTTACGGCAAGGTGGTGGAAACGCCACAGAATGAAAAA 2756613 Query 8586 ACACCCTTCTATCCACGATCCGTCTATGGCGTCT-CAAAGGT-TGCGGCACATTGGCTCG 8643 |||||||||||||| || || || | | | | | ||| | | |||| | ||| | | Sbjct 2756612 ACACCCTTCTATCCGCGTTCGCCGTACG-CTTGTGCCAAGATGTACGGCT-ACTGGATTG 2756555 Query 8644 TGAAGAATTACCGAGAATCCTATGGTCTCTTTGCGTGCTCCGGTATTCTCTTCAACCACG 8703 ||| |||||||| ||| | || | | ||||| ||| || ||||| || ||||||| Sbjct 2756554 TGATAAATTACCGCGAAGCGTACGACATGTTTGCCTGCAATGGCATTCTTTTTAACCACG 2756495 Query 8704 AGTCACCCCGTCGTGGCCCGGATTTCGTGACAAAGAAGATCACC--GATGGTATCAAACA 8761 |||| || || || || | |||| || || ||||| ||| | || | || Sbjct 2756494 AGTCTCCGCGGCGGGGAGAGAATTTTGTCACCCGCAAGATAACCCGGTCAGTGGCGAA-- 2756437 Query 8762 AATCGTCGCG-GGTGAGAGGGAGTTCATTGAATTGGGGAACCTCAACGCCGAGAGGGACT 8820 |||| |||| || || ||||| | | || |||| || || || || || | |||| Sbjct 2756436 AATC-TCGCTTGGCCAGCAGGAGTGCTTGGAGCTGGGCAATCTTGACTCCAAGCGTGACT 2756378 Query 8821 GGGGACACGCCAAGGACTATGTTGAAGCCATGTGGCTCGTACTTCAACAAGAAGAGGCGG 8880 |||| || ||||| ||||| || || ||||||||||| | | || || || | ||| Sbjct 2756377 GGGGGCATGCCAAAGACTACGTGGAGGCCATGTGGCTAATGATGCAGCAGGACAAACCGG 2756318 Query 8881 ACGAATATGTCGTCGCGACGGGGGAGACACACTCCGTCAGGGAGTTCGTTGAG 8933 | || | |||| |||| || |||||||| ||||| || ||||||| || ||| Sbjct 2756317 AAGATTTTGTCATCGCCACTGGGGAGACGCACTCGGTGCGGGAGTTTGTGGAG 2756265 >seq9207 Length=1443628 Score = 107 bits (118), Expect = 2e-18 Identities = 730/1162 (63%), Gaps = 19/1162 (2%) Strand=Plus/Minus Query 113597 CGGAGGTAGTACATCCCCGTCTTGAGCCCCTGCTTCCAGGCATACATATGCATCGAGGAC 113656 || || |||||||| |||||||| || ||| ||||||| | || | || ||||| | | Sbjct 1179122 CGCAGATAGTACATGCCCGTCTTCAGGCCCATCTTCCAGCCGTAGAAGTGAATCGACGTC 1179063 Query 113657 AACTTGGAG-AGTGTTGGACTTTCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAA 113715 | |||| | ||| | || ||| | | ||| | ||||| ||||||||||| Sbjct 1179062 AGCTTGCCGTAGT-TCGGTTCGGCCACGTGAATGTTGAACGACTGGGACTGATCGATGAA 1179004 Query 113716 GCGTCCACGATCCGCCGCCATATCAAT-CACATCCTTCATCTTGATTTCCCACACAGTTC 113774 || || ||||| ||||| | || ||| | |||| | || |||||||| || Sbjct 1179003 CGCACCCCGGTCCGCGGCCATTTTGATGCACGTT-TTCACCGATATCTCCCACACCGTCT 1178945 Query 113775 TGTAGAGGTTCTTAATATCATCTGGGATATCCACGATATTTTGGATGGAGCCACCCGCCT 113834 |||| |||| || | | || || ||| |||| || || || || | Sbjct 1178944 TGTACAGGTCGCGGATGTGCTGCGGAATTTCCTCGATCCGCTGTATCGAACCGTTGTGCG 1178885 Query 113835 TGACCATGAGATCCTTCATATCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGA 113894 | || | | ||||||||| | ||| || || | | | ||||||| || | Sbjct 1178884 CAAGGATTTGGTTCTTCATATCGTCATCCCACAGGCCGAGTTCGGTCAGATCCTGCAGCA 1178825 Query 113895 GATGCTTATTGACAACAACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCG 113954 |||| | ||||| || ||||| |||| || ||| | |||| || | | Sbjct 1178824 GATGGTGGTTGACCACCTGGAACTCGCCCGACAGCACGCGCCGATTGTAGACGTTCGAAG 1178765 Query 113955 TGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCGGTGGAGGCTGTGGGCATGG 114014 |||| ||||| || |||| ||||| |||| |||||||| |||||||| || ||||| | Sbjct 1178764 TGTACGGCTCGAACGACTCGTTGTTGCCCAGAATTTGGGCCGTGGAGGCGGTCGGCATCG 1178705 Query 114015 GTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGGGCGTCCC 114074 |||||| || || || |||| ||| | | ||| |||||| || || ||| Sbjct 1178704 GTGCCAGCAGGAGCGAATTCCGGATACCATGCTTGGCAATCTTTTCCTTCAGCTCGGCCC 1178645 Query 114075 AGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGAGG 114134 ||| | | | ||| | || |||||| || |||| ||||| || | | Sbjct 1178644 AGTTCCACAGGTCCGTTGGGGTCTTCTCCCACATGTCGTACTGCAGGATTCCCTTGCTCA 1178585 Query 114135 CTGGCGATCCCTCAAATGTCTCGTATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCT 114194 | || | ||||| | || ||||| || || || | ||||| || |||| |||| Sbjct 1178584 CCGGACAGCCCTCGTACGTTTCGTACGGACCGTCGCGGGCGGCCAACTCACAGCTAGCCT 1178525 Query 114195 CGAGGGCTGCGTGATACATTGTCTCAAAAATGCGAGCATTCATTGCCTTGG--CCTCGTC 114252 | || || | | || || |||||||| || | |||| || || | | || || Sbjct 1178524 CCAGAGCGCCATAGTAGATGGTCTCAAAGATCTGCTGGTTCA--GCTTTTGTGCTTCCTC 1178467 Query 114253 GGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCC 114312 || ||| | || | ||| || |||| || | || || || |||| || Sbjct 1178466 ACTTTCGTACGGATGGCGCATGAGAATGAACGCATCGGCCATTCCCTGCACGCCGATACC 1178407 Query 114313 AATTGGGCGATGTCTCATATTAGACT--TTCGAGCGGTCTCCACGGGATAAAAATTCCTA 114370 || || || || | ||| || || |||| | | ||| || || | || | Sbjct 1178406 GATAGGTCGGTGGCGCATGTTGGAACGCTTCG--CCTCCGGCACCGGGTAGTAGTTGATG 1178349 Query 114371 TCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAA 114430 ||||| | | || || || ||||| | ||| | || || | ||||| || | Sbjct 1178348 TCGATGATTTTGTTCAGGTTGCGCGTGACGATCTTGGCGACCTCCTTCAGCTTCACGAAG 1178289 Query 114431 TCAAAACTGCGAGTCTCTTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACAC 114490 || | ||||| || | ||| || | || || || ||||||||||| ||| Sbjct 1178288 TCGTACGTGCGA---TCCGGCCTCACAAACATGTTCAGCGCAATCGACGCCAGATTGCAC 1178232 Query 114491 ACAGAGGTCTCATCCTTATCAGTGTACTCTATAATTTCCGTACACAAATTTGAACTCTTA 114550 || | | || ||||| | |||||| | || ||||| |||| || || | ||| Sbjct 1178231 ACCGCAATTTCGTCCTTCGACGAGTACTCGACGATCTCCGTGCACAGGTTCGAGCACTTG 1178172 Query 114551 ATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTAT 114610 || ||||||| ||||| || || ||| ||| |||||||||||||| |||||||| Sbjct 1178171 ATCGTGCCCACGTTCTGCTGGTTGCTCTTCCGGTTGCACGCATCCTTGTAGAGCATGTAC 1178112 Query 114611 GGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGCCTTCCAGACAT-CGGCGGCTGGCAC 114669 ||| |||||||| || |||| || || || ||| | || | ||| || ||| Sbjct 1178111 GGCACGCCCGTCTCGACCTGCGACTCGATGATCGCGAACCACAGATCCTGCGCCT-TCAC 1178053 Query 114670 AGTGGC-GTTGGCTCGCCCCTCCTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCAC 114728 || | | || || || |||| |||||| ||||| || ||||||||||| | Sbjct 1178052 -CTGCCGGATGAACCGACCTTCCTTCTCGTAGCCCGTGTACAGCCGCTCAAACTCTTCGC 1177994 Query 114729 CCACGGCCTCTGAGAGCCCTGG 114750 || | ||| || ||||| || Sbjct 1177993 CCCACGACTCCGACAGCCCGGG 1177972 >seq9243 Length=2754563 Score = 104 bits (114), Expect = 3e-17 Identities = 283/423 (67%), Gaps = 24/423 (6%) Strand=Plus/Plus Query 10780 GATCTTACGATCAAAGCGACCTGGGCGGAGGAGGGCGTCGTCAAGGATATCAATGCGGTT 10839 ||||| ||||| |||||||| ||||| ||||| || | ||| ||||| || | ||||| Sbjct 2616413 GATCTGCCGATCGAAGCGACCGGGGCGAAGGAGCGCCTTGTCTAGGATGTCCACCCGGTT 2616472 Query 10840 CGTCGCCGCGATGACAACGATGCCCGTC-TCGTTATCAAAGCCATCCATCTCAGTCAAG- 10897 ||| ||||| | || || | |||| |||| || || || |||||||| | | || Sbjct 2616473 CGTTGCCGCCAGCACGACCACATTCGTCGTCGT-ATTGAATCCGTCCATCTC-GACGAGC 2616530 Query 10898 AGTTGATTGATGGTTTGTTCGCGTTCATCATTCGCGGGCATACCACCC--GCACT----G 10951 || || |||| || |||| || | | ||| ||||| || || | Sbjct 2616531 AGCTGGTTGAGCGT--------GTTC-TCTTGCTCGGAGTGTCCACCGAAGCTCTTCCCG 2616581 Query 10952 CGTTGCTT---ACCGACGGCGTCAATTTCATCGATGAAAACGATACACGGTTGATTTTCA 11008 | |||| ||| |||||||| |||||||||||||| | || |||||| ||||| Sbjct 2616582 CCACGCTTTCGACCTACGGCGTCGATTTCATCGATGAACAAAATGCACGGTGCATTTTTG 2616641 Query 11009 CGGGCAACTTCAAAGATATCTCGGACTCTCTTGGCACCGACACCCACAAACATTTCCACA 11068 || || | | || ||||| || || | | | ||||||||| ||||||||||||| | Sbjct 2616642 CGCGCCATGGCGAACATATCGCGCACACGCGACGGACCGACACCGACAAACATTTCCAAA 2616701 Query 11069 AAATTGGCGGCGGA-ACATTGGATGAAGGGGACGTTGGATTCACCCGCGATGGCTCGGGC 11127 || | | | || || | |||||| || ||||| | ||| || ||| | || || Sbjct 2616702 AACTCCGATCCCGACACGGT-GATGAACGGTACGTTCGCTTCCCCAGCGGTCGCCTTCGC 2616760 Query 11128 GAGGAGGGTCTTCCCCGTCCCAGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGC 11187 ||| || || || || || || ||| || | || | |||||| ||||| | || Sbjct 2616761 GAGAAGCGTTTTTCCGGTACCGGGTGGGCCAGTCAGCATGGCACCTTTGGGGATTTTCGC 2616820 Query 11188 ACC 11190 ||| Sbjct 2616821 ACC 2616823 >seq9217 Length=1236993 Score = 93.3 bits (102), Expect = 5e-14 Identities = 287/435 (66%), Gaps = 18/435 (4%) Strand=Plus/Plus Query 171728 CCTGTGCCAATACCTTCGGTGCCGTTCACGAGAACCATTGGAAGCGTTGGCATATAGAAG 171787 || || || ||||| |||| |||||||| || | ||| |||| | |||| ||| || Sbjct 55686 CCGGTACCGATACCGTCGGCACCGTTCACCAGTAGCATCGGAATGATGGGCAGATACCAG 55745 Query 171788 TCTGGTTCAATCGCACGCCCATCATCATCCAAATAGTT---GAGCACGGGGTCGTCCCTC 171844 ||||||| || ||| || || || | | || ||||| || |||||| | Sbjct 55746 ACTGGTTCGATG---CGCTGATTGTCCTCGTACTGGTACGCGAGCAGCGGATCGTCCAGC 55802 Query 171845 GGATCAAAGATTTTACGAGCATCCTTGGTGA--GTTTTGTGAAGATGTACCTCGTTTGAG 171902 |||| ||||| || | || | || | | ||||||||||| | || || Sbjct 55803 GGATGGAAGATGCAGCGCG--TCAGGGCCGACAGCATGGTGAAGATGTAACGCGGGCTAG 55860 Query 171903 ACGCA-TCTTTGCCACCCATGAGACGCGTCCCAAATTGACCACACGGTTCAAGGAGATTG 171961 ||| || |||||||| | | ||||| || || ||||| | ||| | || |||||| Sbjct 55861 -CGCTGTCCTTGCCACCGGTCAACCGCGTACCGAACTGACCGCCCGGGTACAGCAGATTG 55919 Query 171962 ATATTGTTTGAACCCATGTAGTCATTGGCCAACTTGACAATCGTATCCGCG-AGGGAGAC 172020 || || || || | ||||| | ||||| || || ||||| || | || | ||| Sbjct 55920 ATGTTATTACTGCCGACGTAGTTCTGCGCCAAGTTAACGATCGT---CGAGCAGAGCGAC 55976 Query 172021 T--TCACCGTGATGGTAGGCCGACTTGTCCGCGACATACGCCGCCAACTGTGCCACCTTC 172078 | || ||||||||||| || ||| | ||||| || | | |||| ||| ||||||||| Sbjct 55977 TGCTCGCCGTGATGGTATGCGGACATTTCCGCCACCGAACCGGCCAGCTGGGCCACCTTC 56036 Query 172079 ATCTCATCCTTGAGGTTCTTGTGGAAGCACGCATACATGACCTTTCTCTGTGAAGGCTTG 172138 | ||| |||| ||| | |||||| | ||| ||||| | ||| ||||| Sbjct 56037 ACCTCGCGCTTGTCGTTACGCTTGAAGCAGGTGAACAGCACCTTCCGCTGGCCCGGCTTC 56096 Query 172139 AGGCCGTCGGCCATG 172153 || |||||| |||| Sbjct 56097 AGCCCGTCGAGCATG 56111 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 597281977303360