Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_010276.1 Length=156179 Score E Sequences producing significant alignments: (Bits) Value seq8738 125 7e-24 seq9207 120 3e-22 seq8899 105 7e-18 seq9240 104 2e-17 >seq8738 Length=1280009 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| ||||||| | ||| || ||||| | || || || || || ||||||||||| | Sbjct 1177206 ACCACCGCGCAGACGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCCGA 1177265 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | ||| || | ||||| ||||||||||||||| | ||||| |||||||| || ||||| Sbjct 1177266 AAGGGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGG 1177325 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCAC 64395 ||||| || || || || || || ||| ||| ||| | || || | || || Sbjct 1177326 GATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATCGTGTCCGAAGGCTCAAC 1177385 Query 64396 TTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATT 64444 || | || | |||||| || |||| || || ||||||||||||||| Sbjct 1177386 CTCCAACGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAAATTTGCATT 1177434 Score = 114 bits (126), Expect = 1e-20 Identities = 165/233 (71%), Gaps = 0/233 (0%) Strand=Plus/Plus Query 64217 CCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCG 64276 || ||||||| | ||| || ||||| | || || || || || ||||||||||| | Sbjct 1177435 CCACCGCGCAGACGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCCGAA 1177494 Query 64277 ACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGA 64336 | || || | ||||| ||||||||||||||| | ||||| |||||||| || ||||| Sbjct 1177495 AGAGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGG 1177554 Query 64337 ATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACT 64396 ||||| || || || || || || ||| ||| ||| | || || | ||||| Sbjct 1177555 ATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATCGTGTCCGAAGGCTCCACC 1177614 Query 64397 TCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTTAAT 64449 || | || | |||||| || || | || || |||||||| ||||| || || Sbjct 1177615 TCCAACGTGATGGTCTTTCCCGTAAGGGTCTTGACGAAAATCTGCATCTTGAT 1177667 Score = 93.3 bits (102), Expect = 4e-14 Identities = 144/206 (70%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 64241 TGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCTTCAAGCTGC 64300 || ||||| ||| | | || |||||||| || | | | | ||| | |||||||||||| Sbjct 1179142 TGCATCGTTGATCCGTGCTGGATGTTGTAGTCGGAAATGATCCGCCCATCTTCAAGCTGC 1179201 Query 64301 TTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCTTGTATTTTT 64360 || || || | |||| ||||||||||| || | || || ||| |||| ||||| Sbjct 1179202 TTTCCCGCGAAGATGATACGCTGCTGGTCCGGTGCTATACCCTCTCGCTCTTCGATTTTG 1179261 Query 64361 TGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTCTTGCCGGTC 64420 |||| | || || || || ||| | || |||| || | |||||||||||| Sbjct 1179262 CTTTTTATATCCAAGACCGTCTCGGAGGCCACGACGTCTAGCGTGATCGTCTTGCCGGTC 1179321 Query 64421 AAAGTTTTTACGAAAATTTGCATTTT 64446 | || || || |||||||||||||| Sbjct 1179322 AGTGTCTTCACAAAAATTTGCATTTT 1179347 >seq9207 Length=1443628 Score = 120 bits (132), Expect = 3e-22 Identities = 541/847 (64%), Gaps = 13/847 (2%) Strand=Plus/Minus Query 154587 GACGCCAAGTTGCAAACGGCAATTTCTTCAGAACTACT-GTATTGCACAATTTCTGCGCA 154645 ||||||| ||||| || |||||||| || | || ||| | || || || | ||| Sbjct 1178246 GACGCCAGATTGCACACCGCAATTTCGTCCTT-CGACGAGTACTCGACGATCTCCGTGCA 1178188 Query 154646 CAAATTACTGCATCGAATGGTGCCCAGGTTTTTCTGATTCGATTTGATGTTGCATGCGTC 154705 || || ||| || ||||||| ||| | ||| || || |||||| || || Sbjct 1178187 CAGGTTCGAGCACTTGATCGTGCCCACGTTCTGCTGGTTGCTCTTCCGGTTGCACGCATC 1178128 Query 154706 TTTGTACAAAATGTACGGGGTGCCCGTTTCCACTTGGGTTTCAATAATTGTGCGAAACAG 154765 ||||| | |||||||| |||||| || || || | || || || | |||| || Sbjct 1178127 CTTGTAGAGCATGTACGGCACGCCCGTCTCGACCTGCGACTCGATGATCG--CGAACCAC 1178070 Query 154766 ACTTC--GCGCCTCAACTTGACAAGTAAATCGATTTTCGCTCTCATATTGTTCGTACAGT 154823 | || |||||| || || | | || ||| ||| |||| || |||||| Sbjct 1178069 AGATCCTGCGCCTTCACCTGCCGGATGAACCGACCTTCCTTCTCGTAGCCCGTGTACAGC 1178010 Query 154824 TTTTCAAACTCTAAACTGTACACGTCCGACAAACCGGGACAGCGGTCGGGACACATCAAT 154883 ||||||||| | || ||||||| ||||| ||| || |||||||| | Sbjct 1178009 CGCTCAAACTCTTCGCCCCACGACTCCGACAGCCCGGGGCAGTCGTGCGGACACATAAGG 1177950 Query 154884 GACCACATTTCGTTTTGTTGTACGCGTTTCATAAACAAATCCGGCACCCACAAAGCGTAC 154943 |||||||||||| | || || ||||| |||| |||||||||||||| ||||| Sbjct 1177949 CTCCACATTTCGTTCGCCTCCACCCGCTTCATGAACAGATCCGGCACCCACAGCGCGTAG 1177890 Query 154944 AACAAATCACGCGCCTTTTTGTCTTCAGCGCCCATGTTTCGCTTTAAATTCAAAAAATCA 155003 |||| |||||||| || || ||| ||||| ||| | || | ||| ||| Sbjct 1177889 AACATGTCACGCGCACGGACCTCCTCCTTGCCAGTGTTTTTCTTCAGATCGAGAAACTCA 1177830 Query 155004 TATATGTCGGCGTGCCACGGCTCTAAATATACGGCCATCGCGCCTTTGCG---TTTTCCT 155060 | | ||| | ||||||||||| | || | ||| | ||| || || || || Sbjct 1177829 AACACATCGCCATGCCACGGCTCGAGGTAGATGGCGAACGCACCGGGACGCTTGTTGCCG 1177770 Query 155061 CCTTGATCCACGTGACGCACACAATTATTGTACACGCGCAACAATGGTTCCACGCCGCTG 155120 || || ||||| | || | || ||||| || |||| || || ||| ||| || Sbjct 1177769 CCCTGGTCCACATACCGGGCCGTGTTGTTGTAGACACGCAGCATCGGAACCAACCCGTTG 1177710 Query 155121 GCCGTGCCGTTGGTGCCACGTATCGCGC-TGCCGCGAGCACGCGCTTTA-TGAACATTAA 155178 | | ||||| ||||| || | | | | || || || | | | || || || | Sbjct 1177709 GAGATACCGTTCGTGCC-CGCAATGTACGTACCCTTCGCCCG-GATGCAGTGCACGTTCA 1177652 Query 155179 CGCCCAAACCTCCGCCGTATTTAGATATTTGCGCACAGTCCGCCAAAGTTTCGTACATTC 155238 || | |||||| || | || || || | || || | | || || ||||| |||| Sbjct 1177651 GACCAATGCCTCCGGCGGACTTGGAGATCAGTGCGCACTGCTTCAGCGTGTCGTAAATTC 1177592 Query 155239 CTTTGATGCTGTCTTCTTTCAACGTCAACAAGAAACACGAAGATAATTGAGGTTGAGGGC 155298 | | ||| ||||| || || ||| | | || || || || | ||| || | | Sbjct 1177591 CCTCGATACTGTCGTCCGACATCGTTAGGAGAAAGCAGGACGACAGTTGGGGCCGCTGCG 1177532 Query 155299 AGCCGGCCGCAAATAATGTAGGACTAGCGTGTGTAAACATTTTGTTGGCGGTTAAGTTGT 155358 | | |||||||| | || || ||||| ||||| | | | || |||| Sbjct 1177531 TGGCCGCCGCAAACATGGTCGGCGAGGCGTGCGTAAAGTATCGCTCCGAAAGCAAATTGT 1177472 Query 155359 AAGTTTCGATGGCGGCGTCAATGTCACGACCGTGTATACCGATCGCCACGCGCATCAGCA 155418 | |||||||| || || || ||||| ||||| || ||||| || ||||||||||||| Sbjct 1177471 ACGTTTCGATTGCCGCATCGATGTCCTCGCCGTGGATCCCGATGGCAACGCGCATCAGCA 1177412 Query 155419 TGTGTTG 155425 |||| || Sbjct 1177411 TGTGCTG 1177405 Score = 84.2 bits (92), Expect = 2e-11 Identities = 205/311 (66%), Gaps = 0/311 (0%) Strand=Plus/Minus Query 154071 GTGAACGGCTCGAACGATTCGTTGTTGCCTAATATTTGAGCTGTAGTTGCTGTGGGCATA 154130 ||| ||||||||||||| ||||||||||| | ||||| || || | || || ||||| Sbjct 1178765 GTGTACGGCTCGAACGACTCGTTGTTGCCCAGAATTTGGGCCGTGGAGGCGGTCGGCATC 1178706 Query 154131 TACGCCACCAACAAAGAGTTTCGCAAACCGTGTTTTGCAATGCGCAATTTTAAATCTGCC 154190 |||| || | || || || | ||| || || ||||| || | || ||| Sbjct 1178705 GGTGCCAGCAGGAGCGAATTCCGGATACCATGCTTGGCAATCTTTTCCTTCAGCTCGGCC 1178646 Query 154191 CAATTCCACAAGTTGGTAGGTTGCACGTTCCACATGTCGTATTGCAAAACACCCAAACTC 154250 || ||||||| || || || | | |||||||||||| |||| | ||| ||| Sbjct 1178645 CAGTTCCACAGGTCCGTTGGGGTCTTCTCCCACATGTCGTACTGCAGGATTCCCTTGCTC 1178586 Query 154251 GCCGGACTGTCACTATAACTAGAGTACGGCCCGTTCAGTTTTGCCAAGTCGCAACTGGCT 154310 |||||| | | || | |||||| |||| | ||||| || || || || Sbjct 1178585 ACCGGACAGCCCTCGTACGTTTCGTACGGACCGTCGCGGGCGGCCAACTCACAGCTAGCC 1178526 Query 154311 TCTAACGCCGCATAGTATACGGTTTCGGCAATTTGTTTGTTTAACATTTTGGCTTTGTCA 154370 || | || ||||||| | ||| || || || | ||| | | ||| |||| ||| Sbjct 1178525 TCCAGAGCGCCATAGTAGATGGTCTCAAAGATCTGCTGGTTCAGCTTTTGTGCTTCCTCA 1178466 Query 154371 CTTTCGTACGG 154381 ||||||||||| Sbjct 1178465 CTTTCGTACGG 1178455 >seq8899 Length=3132144 Score = 105 bits (116), Expect = 7e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 64216 ACCGCCGCGCAATCTAAGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGC 64275 ||| || || | || || || || |||| ||||| || || ||||||||||| || | Sbjct 384452 ACCACCACGAAGTCGCAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCGA 384511 Query 64276 GACGGTGCGCGCGTCTTCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGG 64335 | || || | || || |||||||| ||||| | || || ||||| || || || || Sbjct 384512 AAGCGTACGGCCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGTTGATCTGGCGG 384571 Query 64336 AATTCCTTCTTTTTCTTGTATTTTTTGCTTTACAACCTCCACTGTAT-CACCGGCGTCCA 64394 ||||||||| || || || ||||| ||| ||| ||| | || | | |||| || | Sbjct 384572 AATTCCTTCCTTATCCTGAATTTTCGCCTTCACATTCTCGATCGTGTCCGACGGC-TCGA 384630 Query 64395 CTTCTACAGTTACGGTCTTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 | || | || | ||||||||| || | ||||| |||||||| ||||| || Sbjct 384631 CCTCAAGGGTGATGGTCTTGCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 384682 >seq9240 Length=943838 Score = 104 bits (114), Expect = 2e-17 Identities = 152/215 (71%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 64232 AGCACTAGATGAATCGTCGATTCTTTTTGAATGTTGTAATCTGCGACGGTGCGCGCGTCT 64291 ||||| ||||| | ||||| || || ||||||||||| || | | ||||| | || Sbjct 630372 AGCACCAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTGCGTCCATCC 630431 Query 64292 TCAAGCTGCTTGCCGGCATAAATGAGCCGCTGCTGGTCGGGAGGAATTCCTTCTTTTTCT 64351 || |||||||||||||| | || || ||||||||||| || || || || || || || Sbjct 630432 TCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCC 630491 Query 64352 TGTATTTTTTGCTTTACAACCTCCACTGTATCACCGGCGTCCACTTCTACAGTTACGGTC 64411 || || || ||| ||| ||| | ||||| || || || || | || | |||| Sbjct 630492 TGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTC 630551 Query 64412 TTGCCGGTCAAAGTTTTTACGAAAATTTGCATTTT 64446 || || || | ||||| ||||| || ||||| || Sbjct 630552 TTACCCGTGAGGGTTTTGACGAAGATCTGCATCTT 630586 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 499584892588480