Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14]
9,592 sequences; 220,777,669 total letters
Query= NC_011335.1
Length=119343
Score E
Sequences producing significant alignments: (Bits) Value
seq9210 111 1e-19
seq8937 87.8 1e-12
seq9147 84.2 2e-11
>seq9210
Length=250497
Score = 111 bits (122), Expect = 1e-19
Identities = 210/304 (69%), Gaps = 4/304 (1%)
Strand=Plus/Plus
Query 108340 GCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCC 108399
||||||||||| ||||| | || || || ||| | ||| ||| | ||||||||
Sbjct 21118 GCCGGGTTCGGCGTGACCGGTGGAGTGCACCGGCTCTGGTGCCATCGGTCGTACAAGGCG 21177
Query 108400 ACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATC 108459
| ||| | | | ||||| | |||| |||| | || || |||||||| |||
Sbjct 21178 AAGCTGCCGCTGCGCATCATCCTGATGTGCTGCTACTCGATCGCCGGTCAGAACACGATC 21237
Query 108460 CCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC-GACGGCCGACCC 108518
| ||||| | |||||| | |||||||||||||||| || || ||||| || ||
Sbjct 21238 TACGACTGGGTCCGGGATCACCGCATTCACCACAAGTACTCGGAAACGGACGG-TGATCC 21296
Query 108519 ACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGA 108578
||||||||||||| |||| ||| || | ||||||| || ||||| ||| | |||| |
Sbjct 21297 ACACAACGCCAACCGGGGCTTCCTGTACGCGCACGTCGGCTGGCTGATGCTTCGCAAGCA 21356
Query 108579 CCCCGACGTG-ATCTCGGCCGGTCGAAAAATGGACATGACGGACATATACTCCGATCCGG 108637
||| || ||| ||| | || || ||| || ||| | ||||| | ||||||||
Sbjct 21357 CCCGGA-GTGCATCAAGAAGGGACGGCTAATTGATATGTCCGACATCGTCAGCGATCCGG 21415
Query 108638 TGGT 108641
| ||
Sbjct 21416 TCGT 21419
Score = 91.5 bits (100), Expect = 1e-13
Identities = 73/88 (83%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 108870 GGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGA 108929
|||||| |||| || ||||||| |||||||||||||| |||||||||||||| | ||
Sbjct 43431 GGTGGCATCGTTCGCGTTCGGCGAAGGATGGCACAACTATCACCACGTGTTCCCGTGGGA 43490
Query 108930 CTACAAGGCCGCCGAGTTGGGGAACGAC 108957
||||||| | |||||| |||| ||| ||
Sbjct 43491 CTACAAGACGGCCGAGCTGGGCAACTAC 43518
Score = 87.8 bits (96), Expect = 1e-12
Identities = 66/78 (85%), Gaps = 0/78 (0%)
Strand=Plus/Plus
Query 108881 TGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCG 108940
|||| | |||||||| ||||||||||| |||||||||||||| | ||||||||||| |
Sbjct 22834 TGGCGATGGGCGAGGGCTGGCACAACTATCACCACGTGTTCCCATGGGACTACAAGGCGG 22893
Query 108941 CCGAGTTGGGGAACGACT 108958
||||| |||| ||| |||
Sbjct 22894 CCGAGCTGGGCAACTACT 22911
Score = 82.4 bits (90), Expect = 6e-11
Identities = 60/70 (86%), Gaps = 0/70 (0%)
Strand=Plus/Plus
Query 108881 TGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCG 108940
|||| | |||||||| ||||||||||| |||||||||||||| | ||||||||||| |
Sbjct 26543 TGGCGATGGGCGAGGGCTGGCACAACTATCACCACGTGTTCCCGTGGGACTACAAGGCGG 26602
Query 108941 CCGAGTTGGG 108950
||||| ||||
Sbjct 26603 CCGAGATGGG 26612
>seq8937
Length=61444
Score = 87.8 bits (96), Expect = 1e-12
Identities = 104/141 (74%), Gaps = 0/141 (0%)
Strand=Plus/Plus
Query 108810 GGCGCACATGTACGGCGACCGTCCGTTCGACAAGAACATTTTCCCAAGAGAAAACAAATT 108869
||||||||||| |||| |||| |||| ||| || | || ||| || ||| |
Sbjct 57010 GGCGCACATGTTCGGCAACCGGCCGTACGATAAAAGTATCAGCCCGGTCGAGAACCTGTC 57069
Query 108870 GGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGA 108929
||||||| ||| ||||| ||||| ||||||||||| |||||||| ||||| | ||
Sbjct 57070 GGTGGCGATCGCGGCCCTCGGTGAGGGCTGGCACAACTATCACCACGTTTTCCCGTGGGA 57129
Query 108930 CTACAAGGCCGCCGAGTTGGG 108950
||||||| || |||| ||||
Sbjct 57130 CTACAAGACCAGCGAGCTGGG 57150
>seq9147
Length=209324
Score = 84.2 bits (92), Expect = 2e-11
Identities = 88/116 (76%), Gaps = 0/116 (0%)
Strand=Plus/Minus
Query 118179 CCGTCGCGACCGGCCCTTCCTATCTCTTGATAATAACCGTCCAGTGATTTGGGCATACTG 118238
|||||||| || |||| ||| ||| ||||| || || || | || |||||||| | |
Sbjct 42819 CCGTCGCGCCCCGCCCGTCCCGACTCCTGATAGTAGCCCTCGATCGACTTGGGCATGCAG 42760
Query 118239 TGATGTATCACCAACCGCACGTCGGGTTTATCGATGCCCATCCCGAACGCTATCGT 118294
|| | ||| ||||||| || || ||||||||||||||||||||||| || ||
Sbjct 42759 AAGTGAAGCACATACCGCACATCCGGCTTATCGATGCCCATCCCGAACGCAATGGT 42704
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 381728169805248
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |