Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_011335.1 Length=119343 Score E Sequences producing significant alignments: (Bits) Value seq9210 111 1e-19 seq8937 87.8 1e-12 seq9147 84.2 2e-11 >seq9210 Length=250497 Score = 111 bits (122), Expect = 1e-19 Identities = 210/304 (69%), Gaps = 4/304 (1%) Strand=Plus/Plus Query 108340 GCCGGGTTCGGTGTGACGGCCGGCGTCCATCGGATGTGGACCCACAAAGCCTACAAGGCC 108399 ||||||||||| ||||| | || || || ||| | ||| ||| | |||||||| Sbjct 21118 GCCGGGTTCGGCGTGACCGGTGGAGTGCACCGGCTCTGGTGCCATCGGTCGTACAAGGCG 21177 Query 108400 ACCGCCCCGTTCAGGGTGTTCCTGGCGCTTTGCTTCTCGGTGGCAGGACAGAACACCATC 108459 | ||| | | | ||||| | |||| |||| | || || |||||||| ||| Sbjct 21178 AAGCTGCCGCTGCGCATCATCCTGATGTGCTGCTACTCGATCGCCGGTCAGAACACGATC 21237 Query 108460 CCGCAGTGGGTGCTCGATCACAGGGTTCACCACAAGTACTCTGACAC-GACGGCCGACCC 108518 | ||||| | |||||| | |||||||||||||||| || || ||||| || || Sbjct 21238 TACGACTGGGTCCGGGATCACCGCATTCACCACAAGTACTCGGAAACGGACGG-TGATCC 21296 Query 108519 ACACAACGCCAACAGGGGGTTCTGGTTCTCGCACGTGGGATGGCTCATGATGACCAAGGA 108578 ||||||||||||| |||| ||| || | ||||||| || ||||| ||| | |||| | Sbjct 21297 ACACAACGCCAACCGGGGCTTCCTGTACGCGCACGTCGGCTGGCTGATGCTTCGCAAGCA 21356 Query 108579 CCCCGACGTG-ATCTCGGCCGGTCGAAAAATGGACATGACGGACATATACTCCGATCCGG 108637 ||| || ||| ||| | || || ||| || ||| | ||||| | |||||||| Sbjct 21357 CCCGGA-GTGCATCAAGAAGGGACGGCTAATTGATATGTCCGACATCGTCAGCGATCCGG 21415 Query 108638 TGGT 108641 | || Sbjct 21416 TCGT 21419 Score = 91.5 bits (100), Expect = 1e-13 Identities = 73/88 (83%), Gaps = 0/88 (0%) Strand=Plus/Plus Query 108870 GGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGA 108929 |||||| |||| || ||||||| |||||||||||||| |||||||||||||| | || Sbjct 43431 GGTGGCATCGTTCGCGTTCGGCGAAGGATGGCACAACTATCACCACGTGTTCCCGTGGGA 43490 Query 108930 CTACAAGGCCGCCGAGTTGGGGAACGAC 108957 ||||||| | |||||| |||| ||| || Sbjct 43491 CTACAAGACGGCCGAGCTGGGCAACTAC 43518 Score = 87.8 bits (96), Expect = 1e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Plus Query 108881 TGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCG 108940 |||| | |||||||| ||||||||||| |||||||||||||| | ||||||||||| | Sbjct 22834 TGGCGATGGGCGAGGGCTGGCACAACTATCACCACGTGTTCCCATGGGACTACAAGGCGG 22893 Query 108941 CCGAGTTGGGGAACGACT 108958 ||||| |||| ||| ||| Sbjct 22894 CCGAGCTGGGCAACTACT 22911 Score = 82.4 bits (90), Expect = 6e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 108881 TGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGACTACAAGGCCG 108940 |||| | |||||||| ||||||||||| |||||||||||||| | ||||||||||| | Sbjct 26543 TGGCGATGGGCGAGGGCTGGCACAACTATCACCACGTGTTCCCGTGGGACTACAAGGCGG 26602 Query 108941 CCGAGTTGGG 108950 ||||| |||| Sbjct 26603 CCGAGATGGG 26612 >seq8937 Length=61444 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/141 (74%), Gaps = 0/141 (0%) Strand=Plus/Plus Query 108810 GGCGCACATGTACGGCGACCGTCCGTTCGACAAGAACATTTTCCCAAGAGAAAACAAATT 108869 ||||||||||| |||| |||| |||| ||| || | || ||| || ||| | Sbjct 57010 GGCGCACATGTTCGGCAACCGGCCGTACGATAAAAGTATCAGCCCGGTCGAGAACCTGTC 57069 Query 108870 GGTGGCGGCGTTGGCTCTCGGCGAGGGATGGCACAACTACCACCACGTGTTCCCCTACGA 108929 ||||||| ||| ||||| ||||| ||||||||||| |||||||| ||||| | || Sbjct 57070 GGTGGCGATCGCGGCCCTCGGTGAGGGCTGGCACAACTATCACCACGTTTTCCCGTGGGA 57129 Query 108930 CTACAAGGCCGCCGAGTTGGG 108950 ||||||| || |||| |||| Sbjct 57130 CTACAAGACCAGCGAGCTGGG 57150 >seq9147 Length=209324 Score = 84.2 bits (92), Expect = 2e-11 Identities = 88/116 (76%), Gaps = 0/116 (0%) Strand=Plus/Minus Query 118179 CCGTCGCGACCGGCCCTTCCTATCTCTTGATAATAACCGTCCAGTGATTTGGGCATACTG 118238 |||||||| || |||| ||| ||| ||||| || || || | || |||||||| | | Sbjct 42819 CCGTCGCGCCCCGCCCGTCCCGACTCCTGATAGTAGCCCTCGATCGACTTGGGCATGCAG 42760 Query 118239 TGATGTATCACCAACCGCACGTCGGGTTTATCGATGCCCATCCCGAACGCTATCGT 118294 || | ||| ||||||| || || ||||||||||||||||||||||| || || Sbjct 42759 AAGTGAAGCACATACCGCACATCCGGCTTATCGATGCCCATCCCGAACGCAATGGT 42704 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 381728169805248