Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq9207 251 6e-62 >seq9207 Length=1443628 Score = 251 bits (278), Expect = 6e-62 Identities = 1184/1862 (64%), Gaps = 40/1862 (2%) Strand=Plus/Plus Query 122841 TACAAATATTTTGGATACAAAACGTTAGAAAACGGA--TATTTGaaaaaaaTCGAGGAAA 122898 ||||| |||||||| | ||||||| | ||| ||| || || || ||| ||| | Sbjct 1177330 TACAATTATTTTGGCTTCAAAACGCTCGAA--CGGTCCTACCTGCTGAAGATCAAGGGCA 1177387 Query 122899 AGGTCGCCGAACGTATTCAACATATGCTCATGCGCGTCGCTATAGGCGTGCACGGACGCG 122958 || ||| |||||| || || ||||| |||||||| || || || | ||||| | Sbjct 1177388 AGATCGTCGAACGACCGCAGCACATGCTGATGCGCGTTGCCATCGGGATCCACGGCGAGG 1177447 Query 122959 ACATCGAAAACGCGACCGAAACTTACGATTTGATGTCTCAAAAATTTTTCACGCACGCGA 123018 ||||||| || | |||||| ||| ||||| | || | || || |||||||| Sbjct 1177448 ACATCGATGCGGCAATCGAAACGTACAATTTGCTTTCGGAGCGATACTTTACGCACGCCT 1177507 Query 123019 GTCCCACTTTGTTCGCCGCCGGCACGAAGTTGCCTCAGTTGTCTTCGTGTTTTTTGCTCA 123078 || || |||| || || | |||| || ||| || |||| || || ||| | || | Sbjct 1177508 CGCCGACCATGTTTGCGGCGGCCACGCAGCGGCCCCAACTGTCGTCCTGCTTTCTCCTAA 1177567 Query 123079 CCTTGCGCGAAGACAGCATCACCGGTATCTATGAAACTTTGCGCGATTGCGCGTTGATTT 123138 | || || ||||| ||| || || || || || || | ||||| |||| | Sbjct 1177568 CGATGTCGGACGACAGTATCGAGGGAATTTACGACACGCTGAAGCAGTGCGCACTGATCT 1177627 Query 123139 CCAAATTTGGCGGCGGCATAGGCGTGAACGTGCACGACGTAAGAGGCCGCGGAAGCCGCA 123198 |||| | | ||| ||||| || ||||||||||| | | | | || | || Sbjct 1177628 CCAAGTCCGCCGGAGGCATTGGTCTGAACGTGCACTGCATCCGGGCGAAGGGTACGTACA 1177687 Query 123199 TCAGAAGCACCGACGGAATCGCCTCCGGGCTCGAATCCATGCTGCGAGTTTACAATAACG 123258 | |||| |||| ||| || |||| | | | |||||||| || ||||| ||| Sbjct 1177688 TTGCGGGCACGAACGGTATCTCCAACGGGTTGGTTCCGATGCTGCGTGTCTACAACAACA 1177747 Query 123259 CCGTGCGGCACGTCGACCAGGGCGGCAAA---CGCAAAGGCGCGATGGCGATCTATCTAG 123315 | | ||| | || |||||||||||||| || || ||| | || ||||| || | Sbjct 1177748 CGGCCCGGTATGTGGACCAGGGCGGCAACAAGCGTCCCGGTGCGTTCGCCATCTACCTCG 1177807 Query 123316 AACCGTGGCACGTTGATGTGTACGATTTTTTAAATTTAAAACGCAACATGGGGGCGGAAG 123375 | |||||||| | ||||||| || ||| | || | || |||| || ||| | Sbjct 1177808 AGCCGTGGCATGGCGATGTGTTTGAGTTTCTCGATCTGAAGAAAAACACTGGCAAGGAGG 1177867 Query 123376 AAAAGAAAGCCCGCGATTTGTTGTACGCTTTATGGGTACCCGATTTGTTTATGCGACGCG 123435 | || || || |||| ||||| | ||||| || ||| |||| ||| || | Sbjct 1177868 AGGTCCGTGCGCGTGACATGTTCTACGCGCTGTGGGTGCCGGATCTGTTCATGAAGCGGG 1177927 Query 123436 TAAAAGACGACGGCGTGTGGTCGCTCATGTGTCCCGATCGGTGTCCCGGCTTGAGCGACG 123495 | | | ||| ||||| || |||||||| | || ||||| || || Sbjct 1177928 TGGAGGCGAACGAAATGTGGAGCCTTATGTGTCCGCACGACTGCCCCGGGCTGTCGGAGT 1177987 Query 123496 TTTACGGCAATCAGTTTGACGAGTTGTACGCGCAATACGAGCGCGAAGGCAAACAGGTTA 123555 | ||| | ||||||| | ||||| || |||||| ||||| | | | | Sbjct 1177988 CGTGGGGCGAAGAGTTTGAGCGGCTGTACACGGGCTACGAGAAGGAAGGT---CGGTTCA 1178044 Query 123556 ---GTCAGGTTCCGGCACGTGATTTGTTCAAATTTATTATCGAAACACAAGTCGAAACCG 123612 | ||||| ||| | ||| ||| || ||||| | || ||||| || | Sbjct 1178045 TCCGGCAGGTGAAGGCGCAGGATCTGTGGTTCGCGATCATCGAGTCGCAGGTCGAGACGG 1178104 Query 123613 GAACGCCGTACATGCTCTACAAAGACGCCTGCAACAGGAAAACCAATCAGAGCAACTTGG 123672 | |||||||||||||||||| || || |||||| |||| | ||| ||| ||| ||| Sbjct 1178105 GCGTGCCGTACATGCTCTACAAGGATGCGTGCAACCGGAAGAGCAACCAGCAGAACGTGG 1178164 Query 123673 GAACAATAAAATGTAGTAATCTTTGCTCCGAAATTATCGAATACAG--CGATGCCGATCA 123730 | || || || || || || ||| | || || |||| ||| ||| | || | Sbjct 1178165 GCACGATCAAGTGCTCGAACCTGTGCACGGAGATCGTCGAGTACTCGTCGAAG--GACGA 1178222 Query 123731 AGTGGCCGTGTGTAATTTGGCTTCGATTTGCG-TGAATCGTTGCGTCGAAAACGG--CGC 123787 | | || ||||| ||| |||| |||||| ||| |||| | || || ||| ||| Sbjct 1178223 AATTGCGGTGTGCAATCTGGCGTCGATT-GCGCTGAACATGTTTGT-GAGGCCGGATCGC 1178280 Query 123788 TTTTA--ATTTCCAAACGCTCAAACGCATAACAAAAACTGTAGTAAAG---AATTTGAAC 123842 || | ||| | ||| || | | || | | || | | || ||||| Sbjct 1178281 ACGTACGACTTCGTGAAGCTGAAGGAGGTCGCCAAGA---TCGTCACGCGCAACCTGAAC 1178337 Query 123843 AAAATTATCGATGTTAATTTTTATCCTTTGGAGGAAGCG---CGTTTGTCTAATTTGAAA 123899 ||||| ||||| | || | || || || ||| ||| |||| | || || Sbjct 1178338 AAAATCATCGACATCAACTACTACCCGGTGCCGGAGGCGAAGCGTT---CCAACATGCGC 1178394 Query 123900 CACAGACCGGTCGGAGTGGGCATTCAAGGGTTGGCCGACGCGTTTGTAATGCTGCGCATG 123959 ||| |||| |||| | ||| | || || ||||||| ||||| | | ||||| Sbjct 1178395 CACCGACCTATCGGTATCGGCGTGCAGGGAATGGCCGATGCGTTCATTCTCATGCGCCAT 1178454 Query 123960 CCGTACGAAAGCGACGAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTAC 124019 ||||||||||| || |||||| | ||| || ||| || || || || || || Sbjct 1178455 CCGTACGAAAGTGAGGAAGCACAAAAGCTGAACCAGCAGATCTTTGAGACCATCTACTAT 1178514 Query 124020 GGCGCTTTGGAGGCGAGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCG 124079 |||||| ||||||| ||||| || | || |||| ||||||||| |||| | Sbjct 1178515 GGCGCTCTGGAGGCTAGCTGTGAGTTGGCCGCCCGCGACGGTCCGTACGAAACGTACGAG 1178574 Query 124080 GGCAGCCCGGCGAGCCGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAAT 124139 ||| | |||| |||| || || ||||||||||||||||| | || || || | Sbjct 1178575 GGCTGTCCGGTGAGCAAGGGAATCCTGCAGTACGACATGTGGGAGAAGACCCCAACGGAC 1178634 Query 124140 TTGTGGGACTGGAGCGTTTTAAAACAACGCATATCGACGCACGGTTTGCGTAACTCGCTG 124199 ||||| ||||| || | || || || | | ||| ||| | || || ||||| Sbjct 1178635 CTGTGGAACTGGGCCGAGCTGAAGGAAAAGATTGCCAAGCATGGTATCCGGAATTCGCTC 1178694 Query 124200 TTGGTGGCGTACATGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTC 124259 || |||| |||||||| || |||| || |||||| | || |||||||| || ||| Sbjct 1178695 CTGCTGGCACCGATGCCGACCGCCTCCACGGCCCAAATTCTGGGCAACAACGAGTCGTTC 1178754 Query 124260 GAGCCGTTCACTAACAATTTGTACGTGCGACGAGTGTTAGCCGGCGATTTTCAAGTGATA 124319 ||||||| |||| || | ||| || || ||| | | ||||| || || ||| | Sbjct 1178755 GAGCCGTACACTTCGAACGTCTACAATCGGCGCGTGCTGTCGGGCGAGTTCCAGGTGGTC 1178814 Query 124320 AATCATCATTTGGTGGACGACTTGGTGGCGTTAAATTTGTACGATGAAAACATGCGCAAC 124379 || || ||| || || | || || | | ||| ||||| | ||| ||| Sbjct 1178815 AACCACCATCTGCTGCAGGATCTGACCGAACTCGGCCTGTGGGATGACGATATGAAGAAC 1178874 Query 124380 GAAATTATTGCGGCCGGTGGCAGCGTGCAGCGCATCGCTTCGATTCCGGAACACGTCAAG 124439 |||| ||||| | || | ||||| |||| |||||| | ||| || Sbjct 1178875 CAAATCCTTGCGCACAACGGTTCGATACAGCGGATCGAGGAAATTCCGCAGCACATCCGC 1178934 Query 124440 CAACTGTACAAAACCGTGTGGGAAATGAAAAAT--AAACGATTAATTGAAATGGCCGTCG 124497 | |||||||| || |||||||| || | | ||||| | || ||||||||| | Sbjct 1178935 GACCTGTACAAGACGGTGTGGGAGAT-ATCGGTGAAAACG-TGCATCAAAATGGCCGCGG 1178992 Query 124498 ACCGAGGCGCGTACACGGATCAAAGTCAATCTTTTAACGTGTTTGTAGCGGAACCCACCT 124557 |||| || |||| || ||||| || || || ||| | || || ||||| | || Sbjct 1178993 ACCGGGGTGCGTTCATCGATCAGTCCCAGTCGTTCAACATTCACGTGGCCGAACCGAACT 1179052 Query 124558 ACGCCCGCATGACCAGCATACACATGCACGCGTGGAGCAGCGGACTCAAAACGGGCATGT 124617 ||| | |||| || ||| | ||| |||| | || || || |||||||||| Sbjct 1179053 ACGGCAAGCTGACGTCGATTCACTTCTACGGCTGGAAGATGGGCCTGAAGACGGGCATGT 1179112 Query 124618 ATTACTTAAGAACCAAACCGGCGGCCGATGCCATTCAATTTACCGTCGACAAATCTAAAC 124677 | || | | ||||| ||||| | | || || || ||||| || |||||||| |||| Sbjct 1179113 ACTATCTGCGCACCAAGCCGGCCGTGAACGCGATCCAGTTTACGGTGGACAAATCGAAAC 1179172 Query 124678 TA 124679 || Sbjct 1179173 TA 1179174 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 451949004816320