Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq9207 269 4e-67 seq9254 118 2e-21 >seq9207 Length=1443628 Score = 269 bits (298), Expect = 4e-67 Identities = 475/686 (69%), Gaps = 12/686 (2%) Strand=Plus/Minus Query 203834 TTCGTCTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTAC 203893 |||| ||||||||||| ||||| || ||||||||||| ||| || | | |||||||||| Sbjct 1179170 TTCGATTTGTCCACCGTAAACTGGATCGCGTTCACGGCCGGCTTGGTGCGCAGATAGTAC 1179111 Query 203894 ATGCCGGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACG 203953 ||||| ||||| |||||| ||| ||| ||||| | ||| || || | ||| |||| | Sbjct 1179110 ATGCCCGTCTTCAGGCCCATCTTCCAGCCGTAGAAGTGAATCGACGTCAGCTTGCCGTAG 1179051 Query 203954 TTGGGGTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCCCGATCT 204013 || || ||||||| ||||||||| | |||||| || |||||||| | |||| || Sbjct 1179050 TTCGGTTCGGCCACGTGAATGTTGAACGACTGGGACTGATCGATGAACGCACCCCGGTCC 1178991 Query 204014 GCGGCCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACACGTCTCTG 204073 |||||||| ||||| || ||| ||| |||||||||||||||||| ||| ||| | | Sbjct 1178990 GCGGCCATTTTGATGCACGTTTTCACCGATATCTCCCACACCGTCTTGTACAGGTCGCGG 1178931 Query 204074 GTGTGTTGAGGCACATCTTCCCACG-TCC--TG-ATCGAGCCGTTGTCGGCCATCAGTCT 204129 |||| || || | || || || ||| || ||||| ||||||| || | | | Sbjct 1178930 ATGTGCTGCGGAA----TTTCCTCGATCCGCTGTATCGAACCGTTGTGCGCAAGGATTTG 1178875 Query 204130 CATCCTCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTT 204189 || || | || || |||||| ||| | | |||| ||| ||| ||| ||| |||| Sbjct 1178874 GTTCTTCATATCGTCATCCCACAGGCCGAGTTCGGTCAGATCCTGCAGCAGATGGTGGTT 1178815 Query 204190 GATGATCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTC 204249 || | ||| || || || |||||||| | || || | | ||| ||| | || || Sbjct 1178814 GACCACCTGGAACTCGCCCGACAGCACGCGCCGATTGTAGACGTTCGAAGTGTACGGCTC 1178755 Query 204250 GAACGCCTCGTTGTTGCCGAAAATCTGAGCGGTGCTGGCCGTGGGCATGGGAGCCAGGAG 204309 ||||| |||||||||||| | ||| || || ||| ||| || ||||| || ||||| || Sbjct 1178754 GAACGACTCGTTGTTGCCCAGAATTTGGGCCGTGGAGGCGGTCGGCATCGGTGCCAGCAG 1178695 Query 204310 CAGGGAGTTGCGCACACCGTATTTTTGG--ACCCTGCGCTTCAGAGAGGTCCAGTCGTGC 204367 || || || || | ||| || |||| | | | |||||| || ||||| | Sbjct 1178694 GAGCGAATTCCGGATACC--ATGCTTGGCAATCTTTTCCTTCAGCTCGGCCCAGTTCCAC 1178637 Query 204368 ATCGCACTGGGTTTCACGCCCCACATGTCGAACTGAAAGATGCCTTGACTGACTGGGCTG 204427 | | | || || ||||||||||| |||| | ||| || | || || || | | Sbjct 1178636 AGGTCCGTTGGGGTCTTCTCCCACATGTCGTACTGCAGGATTCCCTTGCTCACCGGACAG 1178577 Query 204428 CCCTTGTACGTCGGATAAGGCTGATCCTCTTCTGCCAGCTTGCACGAGGCGGCCATGGCG 204487 |||| |||||| || || || | |||| || || || ||| ||| Sbjct 1178576 CCCTCGTACGTTTCGTACGGACCGTCGCGGGCGGCCAACTCACAGCTAGCCTCCAGAGCG 1178517 Query 204488 TGATAGTACATGGTCTCAAAGATCTG 204513 |||||| ||||||||||||||||| Sbjct 1178516 CCATAGTAGATGGTCTCAAAGATCTG 1178491 Score = 138 bits (152), Expect = 2e-27 Identities = 437/668 (65%), Gaps = 7/668 (1%) Strand=Plus/Minus Query 204883 CTCCACGATCTCGGTGCACAAGTTACCGCACTTCACCACCCCCACATGCTGCTGGTTAGA 204942 ||| |||||||| ||||||| ||| |||||| | | ||||| | ||||||||| Sbjct 1178205 CTCGACGATCTCCGTGCACAGGTTCGAGCACTTGATCGTGCCCACGTTCTGCTGGTTGCT 1178146 Query 204943 CTTGCGGTTACAGGAGTCCTTGTACATCATGAACGGCATTCCGTTCTCCATCTGAGA-TC 205001 ||| ||||| || | |||||||| | |||| |||||| || |||| | ||| || || Sbjct 1178145 CTTCCGGTTGCACGCATCCTTGTAGAGCATGTACGGCACGCCCGTCTCGACCTGCGACTC 1178086 Query 205002 GCAGAATGTGGGTCCACAATTCGCGAGCCTCCACTTGCTTCACGTACATCCCTTGAGACT 205061 | || | | ||||| || | |||| ||| ||| | | || |||| || Sbjct 1178085 GATGATCGCGAA-CCACAGATCCTGCGCCTTCACCTGCCGGATGAACCGACCTTCCTTCT 1178027 Query 205062 CGTATTTTGTGTACAGCGCCACAAAGTCAGAACCGTACACGTCCATCAGCCCTGGACATT 205121 |||| ||||||||| | |||| || || || ||| |||||| || || | Sbjct 1178026 CGTAGCCCGTGTACAGCCGCTCAAACTCTTCGCCCCACGACTCCGACAGCCCGGGGCAGT 1177967 Query 205122 TTTTGGGACACATCAGAGACCACATCT-GATCGTCTTTCACCCTCTCCATAAACAGGTCG 205180 | |||||||| || |||||| | | ||| || ||||| || ||| ||||| || Sbjct 1177966 CGTGCGGACACATAAGGCTCCACATTTCGTTCGCCTC-CACCCGCTTCATGAACAGATCC 1177908 Query 205181 CTGATCCACAGGCCGTAAAACAGATCACGGGCCCTAATTCCGTCGTCTCCAAGGTTCTTT 205240 | |||||| |||| |||| ||||| || | | | || | ||| ||| || Sbjct 1177907 GGCACCCACAGCGCGTAGAACATGTCACGCGCACGGACCTCCTCCTTGCCAGTGTTTTTC 1177848 Query 205241 TTCAAGTCCAGCCAAGCCGCAATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCG 205300 |||| || || | | | ||| | ||||||||||| | | | ||| | || Sbjct 1177847 TTCAGATCGAGAAACTCAAACACATCGCCATGCCACGGCTCGAGGTAGATGGCGAACGCA 1177788 Query 205301 CCTGGCCTCTTGTTCCCACCCTGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGC 205360 || || | |||||| || ||||||||||| || | | | |||| | || |||||| Sbjct 1177787 CCGGGACGCTTGTTGCCGCCCTGGTCCACATACCGGGCCGTGTTGTTGTAGACACGCAGC 1177728 Query 205361 ATCGGCACCAGACCGTTGGCGGTCCCGTTCGTGCTGTTGATGGCCG-AGCCTTCAGCCCT 205419 ||||| |||| ||||||| | | |||||||||| ||| || | ||||| |||| Sbjct 1177727 ATCGGAACCAACCCGTTGGAGATACCGTTCGTGCCCGCAATGTACGTACCCTTC-GCCCG 1177669 Query 205420 CACGTTGGAGATGGCCGCGCCAATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCTTG 205479 | | | | | | ||||| || || | |||||| |||| | ||||||| | Sbjct 1177668 GATGCAGTGCACGTTCAGACCAATGCCTCCGGCGGACTTGGAGATCAGTGCGCACTGCTT 1177609 Query 205480 CAGAGTGCTGTAGATGCCTGCGATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGC 205539 ||| ||| ||| || || |||| ||||||| || || | ||| |||| || | Sbjct 1177608 CAGCGTGTCGTAAATTCCCTCGATACTGTCGTCCGACATCGTTAGGAGAAAGCAGGACGA 1177549 Query 205540 CAGCTTGG 205547 ||| |||| Sbjct 1177548 CAG-TTGG 1177542 >seq9254 Length=4138565 Score = 118 bits (130), Expect = 2e-21 Identities = 264/391 (68%), Gaps = 9/391 (2%) Strand=Plus/Plus Query 159744 CCAGCAACCTGTCTGCCACAAATTCGATGTAGCTAC-ACATCTGCTCACAGTTGATCCCC 159802 |||||| || ||| || || || |||||||| || | ||||| | |||||||| || ||| Sbjct 2197052 CCAGCAGCCGGTCGGCAACGAACTCGATGTA-CTGCGACATCAGGTCACAGTTCATGCCC 2197110 Query 159803 AGCAGCCTAACGGGGAGCGCTTCCGACAGAAACTCCTTCTCAATCTCGACCGCTTCGGTC 159862 |||| || || ||||| | | || ||||||| || || | ||||| ||| Sbjct 2197111 AGCATATCGACTGGCAGCGCCTTGGTAAGGAACTCCTGTTCGATTACCACCGCATCGCGA 2197170 Query 159863 ACAATCTGCGAG--ACACGTTCGTACCCCGGCTTGCCCAAAATGTGGTCCTTAAACAGGA 159920 | || || || ||||| ||| | |||||| | | ||| || |||| | Sbjct 2197171 ATGAT--GCTAGTCACACGCTCGCGCGTCGGCTTTTGAACCA---GGTATTTGAACATAA 2197225 Query 159921 GGCACGCAAAGTCGCAGTGCAGTCCCTCGTCCCGAGAGATGAACTCGTTGGACATGATGA 159980 |||| |||||||| ||||||| |||||||| || || || | |||||| || | | | | Sbjct 2197226 GGCAAGCAAAGTCACAGTGCAAGCCCTCGTCACGCGAAATCAGCTCGTTCGAGAAGGTCA 2197285 Query 159981 GGCCCGGCATGATCCCACGCGGTTTGAGCCAAAAAATGGCCGCAAAAGCACCGCTAAAAA 160040 ||| ||||| | || ||| || ||||| || || || ||||| ||||| || | Sbjct 2197286 AGCCTGGCATCAGTCCTCGCTTCTTAAGCCAGAAGATAGCGGCAAAGCTGCCGCTGAAGA 2197345 Query 160041 AGATCCCCTCCACGGCCGCAAACGCCACGAGCCTCTCACCAAAAGAGGCGTTGGTGTCAT 160100 | || ||||| ||||| |||||||| || | | ||| || || ||| || || Sbjct 2197346 AAATTCCCTCGACGGCGGCAAACGCGACAACACGCTCGCCGAAGTTGGCTTTCTTGCTCG 2197405 Query 160101 GGGTCCACCTTTTGGCCCATTCAGCCTTCTT 160131 |||| | ||||| ||||||||||| Sbjct 2197406 AAATCCAGTTCAGTGCCCAGTCAGCCTTCTT 2197436 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795059860891520