Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq9254 255 6e-63 seq9325 134 1e-26 seq9240 131 2e-25 seq8899 111 2e-19 seq8738 100 3e-16 >seq9254 Length=4138565 Score = 255 bits (282), Expect = 6e-63 Identities = 313/425 (74%), Gaps = 2/425 (0%) Strand=Plus/Plus Query 132715 TCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATGGTTTCGCAATTAAGT 132774 ||||| ||||||| |||||| |||||||||||||| |||||||| || || || | Sbjct 2197048 TCGACCAGCAGCCGGTCGGCAACGAACTCGATGTACTGCGACATCAGGTCACAGTTCATG 2197107 Query 132775 CCCAGCAGACGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCGACCGCGTCG 132834 ||||||| | || |||||||| | ||| || || || ||||| | ||||| ||| Sbjct 2197108 CCCAGCATATCGACTGGCAGCGCCTTGGTAAGGAACTCCTGTTCGATTACCACCGCATCG 2197167 Query 132835 GTGACGATTTCCCTAACGCGCGCCGCGC-TCGGCCGTTGCACCAAATGCTTGAACATCAA 132893 | ||| | || ||| | |||| ||||| ||| |||| | |||||||| | Sbjct 2197168 CGAATGATGCTAGTCACACGCTC-GCGCGTCGGCTTTTGAACCAGGTATTTGAACATAAG 2197226 Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 |||||||||||| || |||||||||||||| | ||||| || ||||| ||| ||||| Sbjct 2197227 GCAAGCAAAGTCACAGTGCAAGCCCTCGTCACGCGAAATCAGCTCGTTCGAGAAGGTCAA 2197286 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 ||| ||||| || || || || || ||||| || || ||||| || ||||| ||||| Sbjct 2197287 GCCTGGCATCAGTCCTCGCTTCTTAAGCCAGAAGATAGCGGCAAAGCTGCCGCTGAAGAA 2197346 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 | ||||||||||| || || || || | ||||||||||| |||||| ||||| | Sbjct 2197347 AATTCCCTCGACGGCGGCAAACGCGACAACACGCTCGCCGAAGTTGGCTTTCTTGCTCGA 2197406 Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCACGGCATCGTTTCGATGGCGTT 133133 |||||| ||| ||||| || ||||| | || || ||||| | |||||||||||| || Sbjct 2197407 AATCCAGTTCAGTGCCCAGTCAGCCTTCTTCTTCACACACGGTAGCGTTTCGATGGCATT 2197466 Query 133134 CAACA 133138 |||| Sbjct 2197467 GAACA 2197471 Score = 188 bits (208), Expect = 7e-43 Identities = 202/267 (76%), Gaps = 0/267 (0%) Strand=Plus/Plus Query 133161 ACGCACGTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGAT 133220 ||| | ||| |||||||| || || ||||| || ||| ||||| ||||| ||||| Sbjct 2197573 ACGAATGTACGTGTCGATCAGCAGGGAGTACATCTCGCTGTGGACGTTTTCCATCGCGAT 2197632 Query 133221 TTGAAAGCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGAC 133280 || || || || ||||| ||||| ||| |||||||||||| || ||| || ||||| Sbjct 2197633 CTGGAAACCATAGAAGCAGCGCGCTTCGGTCACCTGCACTTCCTGGCTGAATCGTTCGAC 2197692 Query 133281 CAGATTTTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAA 133340 |||||| ||||||||||| ||||| |||||||| || || ||||||||| |||||| Sbjct 2197693 CAGATTCTCGTTGACGATTCCGTCCGATGCGGCGAAGAAAGCGAGCACGTGCGAGATGAA 2197752 Query 133341 ATGGCGCTCGTTGTCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTC 133400 || || ||| | ||||| ||||||||| | ||||||| || ||||| ||||| Sbjct 2197753 GTGACGTTCGCTCGGTTTCAACGACTCCCAGTCCTTCATGTCCTTCGAGAGGTCTACCTC 2197812 Query 133401 CTCGACGGTCCAAAACGACGCCTCGGC 133427 ||| || ||||| || || |||||||| Sbjct 2197813 CTCTACCGTCCAGAAAGATGCCTCGGC 2197839 >seq9325 Length=2359367 Score = 134 bits (148), Expect = 1e-26 Identities = 162/218 (74%), Gaps = 2/218 (1%) Strand=Plus/Plus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 |||||| || ||||| || ||||| || ||||| |||||||| |||| |||||| | | Sbjct 260903 AATGCAGATTTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTCGAGGTCGAGCCTTC 260962 Query 38303 CGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | | | |||| | || | || |||| ||||| ||||| |||||| | || | Sbjct 260963 GGACACCATCGAGAACG-TCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCCCCAGATC 261021 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| | || | ||| || || |||||||| |||| || || || |||||||| Sbjct 261022 AGCAGCGTTTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACA 261081 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||| |||||| |||| || || ||||| || ||| Sbjct 261082 ACATCCAGAAGGAATCGACCCTTCACTTGGTTCTTCGT 261119 >seq9240 Length=943838 Score = 131 bits (144), Expect = 2e-25 Identities = 162/219 (74%), Gaps = 2/219 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| ||||| |||||||| || ||||| ||| | || |||||| || Sbjct 630586 AAGATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCC 630527 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCG-A 38359 | || | | | | | || | || |||| ||||| ||||| || ||||||| | Sbjct 630526 TCGGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCAT-CCCGCCGGA 630468 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| || || | ||| ||||| |||||||| || | ||||| || |||||| Sbjct 630467 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACGCTGTCCGACTA 630408 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || ||||| |||| || ||| |||||||||| Sbjct 630407 CAACATTCAGAAGGAGTCGACCCTCCATCTGGTGCTGCG 630369 >seq8899 Length=3132144 Score = 111 bits (122), Expect = 2e-19 Identities = 156/219 (71%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 38240 AAAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGC 38299 ||| ||||| || ||||| ||||| ||||| ||||| ||||||||| | || |||||| | Sbjct 384683 AAAGATGCAGATTTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCC 384624 Query 38300 CACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | | | | || | ||||| | || || || |||||||| | || Sbjct 384623 GTCGGACACGATCGAGAATGTGAAGGCGAAAATTCAGGATAAGGAAGGAATTCCGCCAGA 384564 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 |||||||| || || | ||| || || |||||||| || | || || || ||||| Sbjct 384563 TCAACAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGTACGCTTTCGGACTA 384504 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCG 38458 |||||| || ||||| |||| || || |||| ||||| Sbjct 384503 CAACATTCAGAAGGAGTCGACCCTTCACCTGGTTCTGCG 384465 >seq8738 Length=1280009 Score = 100 bits (110), Expect = 3e-16 Identities = 161/229 (70%), Gaps = 2/229 (1%) Strand=Plus/Minus Query 38243 AATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCAC 38302 ||||||||| ||||| || || || || || || |||||||| | || || ||| | | Sbjct 1177434 AATGCAAATTTTCGTCAAGACCCTGACTGGAAAGACCATCACGTTGGAGGTTGAGCCTTC 1177375 Query 38303 CGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACC 38361 |||| | || || | | || | || || | ||||| |||||||| || | || | Sbjct 1177374 GGACACGATTGAGAATG-TGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGATC 1177316 Query 38362 AACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACA 38421 | ||||| ||||| | || ||||| |||||||| || | || ||||| || |||| Sbjct 1177315 AGCAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTTTCGGATTACA 1177256 Query 38422 ACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||| ||||| | || || ||| |||| || ||| || | || || Sbjct 1177255 ACATCCAGAAGGAGTCTACTCTCCATCTGGTCCTTCGTCTGCGCGGTGG 1177207 Score = 95.1 bits (104), Expect = 1e-14 Identities = 161/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || ||||| || |||||||| | || || ||| | Sbjct 1177664 AAGATGCAGATTTTCGTCAAGACCCTTACGGGAAAGACCATCACGTTGGAGGTGGAGCCT 1177605 Query 38301 ACCGACA-GCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 | |||| | || || | | || | || || | ||||| |||||||| || | || Sbjct 1177604 TCGGACACGATTGAGAATG-TGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGA 1177546 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 || ||||| ||||| | || ||||| |||||||| || | || || || || || Sbjct 1177545 TCAGCAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCGGATTA 1177486 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGG 38470 ||||||||| ||||| | || || ||| |||| || ||| || | || || Sbjct 1177485 CAACATCCAGAAGGAGTCTACTCTCCATCTGGTCCTTCGTCTGCGCGGTGG 1177435 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/234 (69%), Gaps = 6/234 (3%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 ||||||||||| || || || || || || ||||| || ||||| | ||||||| |||| Sbjct 1179347 AAAATGCAAATTTTTGTGAAGACACTGACCGGCAAGACGATCACGCTAGACGTCGTGGCC 1179288 Query 38301 ACCGACAGCGT---GCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCC 38357 |||| | || | | | | ||| |||||| || |||||| || | | Sbjct 1179287 TCCGAGACGGTCTTGGATA---TAAAAAGCAAAATCGAAGAGCGAGAGGGTATAGCACCG 1179231 Query 38358 GACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGAC 38417 ||||| ||||| |||| | |||||| || ||||| || || | ||| | | | |||| Sbjct 1179230 GACCAGCAGCGTATCATCTTCGCGGGAAAGCAGCTTGAAGATGGGCGGATCATTTCCGAC 1179171 Query 38418 TACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||||||||| | | | | ||| |||| ||||| ||||| | | ||| ||| Sbjct 1179170 TACAACATCCAGCACGGATCAACGATGCACTTGGTCCTGCGCCTCAAAGGAGGC 1179117 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500112829281280