Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14]
9,592 sequences; 220,777,669 total letters
Query= NC_015398.1
Length=101487
Score E
Sequences producing significant alignments: (Bits) Value
seq9240 114 8e-21
seq8899 100 2e-16
seq8738 100 2e-16
seq9325 96.9 2e-15
>seq9240
Length=943838
Score = 114 bits (126), Expect = 8e-21
Identities = 144/196 (73%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||||||||| ||||| || || | ||| |||| |||||||| || ||||| ||
Sbjct 630393 TCCTTCTGAATGTTGTAGTCGGACAGCGTGCGTCCATCCTCCAGCTGCTTGCCGGCGAAG 630452
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || |||||||| |||| | ||||||||||| |||||| || || ||
Sbjct 630453 ATCAGACGCTGCTGGTCCGGCGGGATGCCCTCCTTGTCCTGGATCTTCGCCTTCAC--AT 630510
Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
|| |||| || || ||| || || | ||| ||||| || |||||||| || || |
Sbjct 630511 TCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTAATGGTCTTACCCGTGAGGGTTTTGA 630570
Query 34969 CAAAGATCTGCATATT 34984
| ||||||||||| ||
Sbjct 630571 CGAAGATCTGCATCTT 630586
>seq8899
Length=3132144
Score = 100 bits (110), Expect = 2e-16
Identities = 154/218 (71%), Gaps = 4/218 (2%)
Strand=Plus/Plus
Query 34769 CAAAACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATC 34828
|| ||||| ||||| || || ||||||||||| ||||||||||| | || ||||
Sbjct 384467 CAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGCGTACGGCCATC 384526
Query 34829 ATCCAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTC 34888
|||||||| || ||||| || || || || || || ||| |||| | || ||||| ||
Sbjct 384527 CTCCAGCTGCTTACCGGCGAAGATCAGACGCTGTTGATCTGGCGGAATTCCTTCCTTATC 384586
Query 34889 GCTAATCTTCTGTTTGACGGATGCT--ATCGATTCACCGGCCTCAACATCGACGGTTATG 34946
||| ||| || || || || |||| || | ||| || || | ||| |||
Sbjct 384587 CTGAATTTTCGCCTTCAC--ATTCTCGATCGTGTCCGACGGCTCGACCTCAAGGGTGATG 384644
Query 34947 GTTTTTCCCGTGAGAGTCTTCACAAAGATCTGCATATT 34984
|| || || ||||| || ||||| || |||||||| ||
Sbjct 384645 GTCTTGCCAGTGAGGGTTTTCACGAAAATCTGCATCTT 384682
>seq8738
Length=1280009
Score = 100 bits (110), Expect = 2e-16
Identities = 139/193 (72%), Gaps = 4/193 (2%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| || ||||||||| | || |||| |||||||| || ||||||||
Sbjct 1177243 TCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAG 1177302
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || ||||| ||| | || | ||||||||||| |||||| || || ||
Sbjct 1177303 ATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCAC--AT 1177360
Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
|| |||| || | |||||| || | || ||||| ||||| || || ||||| |
Sbjct 1177361 TCTCAATCGTGTCCGAAGGCTCAACCTCCAACGTGATGGTCTTTCCAGTCAGGGTCTTGA 1177420
Query 34969 CAAAGATCTGCAT 34981
| || || |||||
Sbjct 1177421 CGAAAATTTGCAT 1177433
Score = 100 bits (110), Expect = 2e-16
Identities = 141/196 (72%), Gaps = 4/196 (2%)
Strand=Plus/Plus
Query 34791 TCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATCCAGCTGTTTTCCGGCAAAT 34850
|| ||||| ||||| || |||||||| | || |||| |||||||| || ||||||||
Sbjct 1177471 TCCTTCTGGATGTTGTAATCCGAAAGAGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAG 1177530
Query 34851 ATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCTAATCTTCTGTTTGACGGAT 34910
|| || || ||||| ||| | || | ||||||||||| |||||| || || ||
Sbjct 1177531 ATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGAATCTTGGCCTTCAC--AT 1177588
Query 34911 GCT--ATCGATTCACCGGCCTCAACATCGACGGTTATGGTTTTTCCCGTGAGAGTCTTCA 34968
|| |||| || | ||| || || | || ||||| |||||||| || ||||| |
Sbjct 1177589 TCTCAATCGTGTCCGAAGGCTCCACCTCCAACGTGATGGTCTTTCCCGTAAGGGTCTTGA 1177648
Query 34969 CAAAGATCTGCATATT 34984
| || |||||||| ||
Sbjct 1177649 CGAAAATCTGCATCTT 1177664
>seq9325
Length=2359367
Score = 96.9 bits (106), Expect = 2e-15
Identities = 151/214 (71%), Gaps = 8/214 (4%)
Strand=Plus/Minus
Query 34772 AACCAAGTGAATTGTGCTTTCTTTCTGAATGTTATAGTCCGAAAGGCTTCGTTCATCATC 34831
||||||||||| || ||| ||||| ||||| ||||| || || | ||| | || ||
Sbjct 261113 AACCAAGTGAAGGGTCGATTCCTTCTGGATGTTGTAGTCGGACAGAGTACGTCCGTCCTC 261054
Query 34832 CAGCTGTTTTCCGGCAAATATTAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGCT 34891
|||||| ||||| || || || | || ||||| ||| | || | |||||||||||
Sbjct 261053 CAGCTGCTTTCCAGCGAAGATCAAACGCTGCTGATCTGGGGGAATACCCTCCTTGTCCTG 260994
Query 34892 AATCTTCTGTTTGACGGATGCTATCGAT--TCACCG--GCCTCAACATCGACGGTTATGG 34947
||||| ||||| | | ||||| | ||| | ||| || |||| || ||||
Sbjct 260993 GATCTTAGCCTTGAC----GTTCTCGATGGTGTCCGAAGGCTCGACCTCGAGAGTGATGG 260938
Query 34948 TTTTTCCCGTGAGAGTCTTCACAAAGATCTGCAT 34981
| || || || || |||||||| || ||||||||
Sbjct 260937 TCTTGCCAGTCAGCGTCTTCACGAAAATCTGCAT 260904
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 324595649520576
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |