Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq8738 109 4e-19 seq9240 98.7 8e-16 seq8899 89.7 4e-13 >seq8738 Length=1280009 Score = 109 bits (120), Expect = 4e-19 Identities = 152/213 (71%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || || ||| || || || |||||||| || ||| | || | || ||| Sbjct 1177453 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCCGAAAGAGTACGGCCATCTTCC 1177512 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| |||||||| || || ||||| ||||| | || | ||||||||||| | Sbjct 1177513 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGA 1177572 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||||||||||| ||| || || ||| Sbjct 1177573 ATCTTGGCCTTCACATTCTCAATCGTGTCCGAAGGCTCCACCTCCAACGTGATGGTCTTT 1177632 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 ||||| | || || || |||||||||||| || Sbjct 1177633 CCCGTAAGGGTCTTGACGAAAATCTGCATCTTG 1177665 Score = 93.3 bits (102), Expect = 3e-14 Identities = 146/209 (70%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 |||| ||| || || ||| || || || |||||||| || || | || | || ||| Sbjct 1177225 ACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCCGAAAGGGTACGGCCATCTTCC 1177284 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 | |||||| |||||||| || || ||||| ||||| | || | ||||||||||| | Sbjct 1177285 AGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGGATTCCCTCCTTGTCCTGA 1177344 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || ||| | | | || || | ||| ||||||| ||| || || ||| Sbjct 1177345 ATCTTGGCCTTCACATTCTCAATCGTGTCCGAAGGCTCAACCTCCAACGTGATGGTCTTT 1177404 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 || |||| || || || ||||| ||||| Sbjct 1177405 CCAGTCAGGGTCTTGACGAAAATTTGCAT 1177433 >seq9240 Length=943838 Score = 98.7 bits (108), Expect = 8e-16 Identities = 155/222 (70%), Gaps = 0/222 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| ||||| ||| || || ||| || ||||| ||||| || || || | || Sbjct 630366 AGGCGCAGCACCAGATGGAGGGTCGACTCCTTCTGAATGTTGTAGTCGGACAGCGTGCGT 630425 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||| ||||| || ||||| ||||| || |||| || | ||||||| Sbjct 630426 CCATCCTCCAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCCGGCGGGATGCCCTCC 630485 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 ||||| ||||| || ||| | | | || || | ||| ||||| | ||| Sbjct 630486 TTGTCCTGGATCTTCGCCTTCACATTCTCGATCGTATCCGAGGGCTCGACCTCAAGGGTA 630545 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATCGTG 48770 || || || ||||| | ||||| || || ||||||||| || Sbjct 630546 ATGGTCTTACCCGTGAGGGTTTTGACGAAGATCTGCATCTTG 630587 >seq8899 Length=3132144 Score = 89.7 bits (98), Expect = 4e-13 Identities = 151/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 48549 AGCCGCAACACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGA 48608 || |||| |||| || || || ||| || ||||| ||||| || || || | || Sbjct 384462 AGTCGCAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGCGTACGG 384521 Query 48609 TCGTCGTCCAACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCC 48668 | || |||| |||||||||||| || ||||| ||||||||||| | |||| || ||| Sbjct 384522 CCATCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGTTGATCTGGCGGAATTCCTTCC 384581 Query 48669 TTGTCGCTAATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTA 48728 || || ||| || || ||| | | | || |||| ||| ||||| | || Sbjct 384582 TTATCCTGAATTTTCGCCTTCACATTCTCGATCGTGTCCGACGGCTCGACCTCAAGGGTG 384641 Query 48729 ATCGTTTTTCCCGTCAAAGTTTTTACAAAAATCTGCATC 48767 || || || || || | ||||| || |||||||||||| Sbjct 384642 ATGGTCTTGCCAGTGAGGGTTTTCACGAAAATCTGCATC 384680 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380893067442216