Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_019491.1 Length=291144 Score E Sequences producing significant alignments: (Bits) Value seq9207 333 5e-86 seq9141 122 2e-22 seq9254 107 4e-18 >seq9207 Length=1443628 Score = 333 bits (368), Expect = 5e-86 Identities = 882/1326 (67%), Gaps = 62/1326 (5%) Strand=Plus/Minus Query 212900 CAGGTGAGGGTTGACTATCTGGAAGTCACCTGAGAGCACCCTCCTCTGGTAAAAGTTTGA 212959 ||| || ||||||| | |||||| || || || ||||| | || | ||| | ||| || Sbjct 1178826 CAGATGGTGGTTGACCACCTGGAACTCGCCCGACAGCACGCGCCGATTGTAGACGTTCGA 1178767 Query 212960 AGTGTAGGGCTCGATGCTCTCGTTGTTCCCCAGAATCTGTGCAGTGCTGGCTGTGGGCAT 213019 |||||| ||||||| ||||||||| |||||||| || || ||| ||| || ||||| Sbjct 1178766 AGTGTACGGCTCGAACGACTCGTTGTTGCCCAGAATTTGGGCCGTGGAGGCGGTCGGCAT 1178707 Query 213020 GGGAGCCACCAGGAGACTGTTCCTCACTCCGTGCTCGCCGATGAGGCGCCGAAGCTCTGC 213079 || |||| |||||| |||| | || |||| | | || | ||||| || Sbjct 1178706 CGGTGCCAGCAGGAGCGAATTCCGGATACCATGCTTGGCAATCTTTTCCTTCAGCTCGGC 1178647 Query 213080 CCAGTCCCATCTGCCAGACAGGTCCTC---GTCCTTCACGTTCCACATGTCAAACTGCAA 213136 ||||| ||| ||||||| | |||| | ||||||||| |||||| Sbjct 1178646 CCAGTTCCA---------CAGGTCCGTTGGGGTCTTCTC---CCACATGTCGTACTGCAG 1178599 Query 213137 GATGCCTTTGCTCACGGGGCTGCCCTGGTAAGAGGAGTAGGGGCCATGCTCCTTGGCCAG 213196 ||| || |||||||| || | ||||| ||| | ||| || || | ||||| Sbjct 1178598 GATTCCCTTGCTCACCGGACAGCCCTCGTACGTTTCGTACGGACCGTCGCGGGCGGCCAA 1178539 Query 213197 CTCGCAGGACGCCTGCAGGGCAGCGTAGTAGATGGTTTCAAATATCTCCCTGTTGAGCTT 213256 ||| ||| |||| ||| || | ||||||||||| ||||| |||| | ||| ||||| Sbjct 1178538 CTCACAGCTAGCCTCCAGAGCGCCATAGTAGATGGTCTCAAAGATCTGCTGGTTCAGCTT 1178479 Query 213257 CTTGGCCTC------TGGGGACGTGAAGG-GCATCATCATGCGTTGGAACACATCAGCCA 213309 | || || | | ||| || || |||| | ||| ||| |||| |||| Sbjct 1178478 TTGTGCTTCCTCACTTTCGTACG-GATGGCGCATGAGAATG------AACGCATCGGCCA 1178426 Query 213310 GCCCCTGGACCCCGATGCCGATGGGTCTGTGTCTCAGGTTAGA---CTTGGAGCACTCCT 213366 ||||| || ||||| ||||| |||| ||| | || ||| || ||| | |||| Sbjct 1178425 TTCCCTGCACGCCGATACCGATAGGTCGGTGGCGCATGTTGGAACGCTTCGC---CTCCG 1178369 Query 213367 CCAAGGGGTAAAAGTTGCAGTCGATGATCTTGTTGAGGTTGCGGGTGGCCACTTTGGTGA 213426 || ||||| ||||| ||||||||| ||||| |||||||| ||| | | |||| || Sbjct 1178368 GCACCGGGTAGTAGTTGATGTCGATGATTTTGTTCAGGTTGCGCGTGACGATCTTGGCGA 1178309 Query 213427 CATGGGCCAGGTACTCGTGATTGAACACGTAGCCCCCGTCCTGCACAAACTCAGGCAGGG 213486 | | ||| | | || | | || || ||| ||| ||||||| ||| | Sbjct 1178308 CCTCCTTCAGCTTCACGAAGTCGTAC--GTGCGATCCGGCCT-CACAAACATGTTCAGCG 1178252 Query 213487 CGATGCTGGCCAGGTTGCAAACGGCCA---CCTCCTGAGAGTCTGTGTACTCCATGATCT 213543 | || ||||| ||||| || || | | |||| || | |||||| | ||||| Sbjct 1178251 CAATCGACGCCAGATTGCACACCGCAATTTCGTCCTTCGAC---GAGTACTCGACGATCT 1178195 Query 213544 CGGTGCACAGGTTGCTGCATCGGATGGTGCCCAGGTTCTGGTGGTTTGACTTTGCGTTGG 213603 | ||||||||||| ||| ||| ||||||| |||||| ||||| ||| |||| Sbjct 1178194 CCGTGCACAGGTTCGAGCACTTGATCGTGCCCACGTTCTGCTGGTTGCTCTTCCGGTTGC 1178135 Query 213604 CAGAATCCTTGTAGAGCATGTAGGGGGACCCGGTCTCTAGCTGGGACACCAGTATCTGGC 213663 | |||||||||||||||||| || || ||||| | ||| ||| | | ||| | Sbjct 1178134 ACGCATCCTTGTAGAGCATGTACGGCACGCCCGTCTCGACCTGCGACTCGATGATCGCGA 1178075 Query 213664 TCCAGAGGTACCTG-GCCTTGACCACCCGCCTGACAGCTCCGGGCGTAGCCTCGTA--CT 213720 ||| || | |||| ||||| ||| ||| ||| || | | |||||| | Sbjct 1178074 ACCACAGAT-CCTGCGCCTTCACCTGCCGGATGAACCGACCTTCCTT---CTCGTAGCCC 1178019 Query 213721 GTTCGTAGAGCTCGTTGAATTCGTGGCCCCA-GACCCTGTCCAGTCCCGGACAGGA-TGC 213778 || ||| ||| | || || | |||||| ||| | | | || || || ||| ||| Sbjct 1178018 GT--GTACAGCCGCTCAAACTCTTCGCCCCACGACTCCGAC-AGCCCGGGGCAGTCGTGC 1177962 Query 213779 GGGACACATGAGGCTCCAGTCCCCGT-CATCTCTGACTCTCTGCATGAACAGGTCCGGGA 213837 || |||||| |||||||| ||| | ||| || | || ||||||||| ||||| | Sbjct 1177961 GG-ACACATAAGGCTCCACATTTCGTTCGCCTCC-ACCCGCTTCATGAACAGATCCGGCA 1177904 Query 213838 CCCACAGCGCGGTGAACAGGTCCCTGGTCCTCCTCTCGTCCACTCCAGAGTTTTTGCGCA 213897 ||||||||||| ||||| ||| | | | ||| ||| |||| |||||| || Sbjct 1177903 CCCACAGCGCGTAGAACATGTCACGCGCACGGACCTCCTCCTTGCCAGTGTTTTTCTTCA 1177844 Query 213898 GATCTAGAAAGTCAAAGATGTCCGCGTGCCACGGCTCCATGTAGATGGCAAAGGCGCCCG 213957 |||| ||||| ||||| | || | ||||||||||| | ||||||||| || || || | Sbjct 1177843 GATCGAGAAACTCAAACACATCGCCATGCCACGGCTCGAGGTAGATGGCGAACGCACCGG 1177784 Query 213958 ---GCCTCTTGCCGCCCTGGTCCACCAGCCTGGCCACCATGTTGAAGATGCGCAGGACGG 214014 || | ||||||||||||||||| || |||| ||||| ||| ||||| | | Sbjct 1177783 GACGCTTGTTGCCGCCCTGGTCCACATACCGGGCCGTGTTGTTGTAGACACGCAGCATCG 1177724 Query 214015 GTACCAGCCCGTTGGACTGTCCGTTGGTTCCCGCTATATACGAGCCGGAGGCCCTCAGGT 214074 | |||| ||||||||| ||||| || ||||| || |||| || |||| | | Sbjct 1177723 GAACCAACCCGTTGGAGATACCGTTCGTGCCCGCAATGTACGTACCCTTCGCCCGGATGC 1177664 Query 214075 TGCTCATGGAGAGCCCTATGCCACCGGCGTACTTGGAGATCATGGCGCAGCGCCTCACAG 214134 | || | || || ||||| |||||| |||||||||||| ||||| || ||| | Sbjct 1177663 AGTGCACGTTCAGACCAATGCCTCCGGCGGACTTGGAGATCAGTGCGCACTGCTTCAGCG 1177604 Query 214135 TCTCCATGATGCCGGCCATGCTGTCATCTGTGAGGTTCAGCAAGAAGCAGCTCGAGAGCT 214194 | || || || | || ||||| || | | | || | |||||| ||| || | Sbjct 1177603 TGTCGTAAATTCCCTCGATACTGTCGTCCGACATCGTTAGGAGAAAGCAGGACGACAGTT 1177544 Query 214195 GGGGCC 214200 |||||| Sbjct 1177543 GGGGCC 1177538 >seq9141 Length=1064938 Score = 122 bits (134), Expect = 2e-22 Identities = 108/135 (80%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 241489 CTTGAGCACCTTCACTTTCTCCTCCAGCCGCGCGATGCGTTCCAGTTTGCGCCGGCGGCA 241548 ||| ||| ||||||| || ||||||||| || |||||| || ||||| ||||| ||||| Sbjct 60362 CTTCAGCTCCTTCACCTTGTCCTCCAGCTTCGAGATGCGCTCGAGTTTCCGCCGCCGGCA 60421 Query 241549 TTTGGTGGCTGCCAAGCGGTTCCGGAGTCTCTTACGTTCCGCCTTGATGCGTTCCTGGTC 241608 |||| ||| |||| || ||||| |||| ||| || || ||||||||| |||||| Sbjct 60422 CTTGGAGGCGGCCACCCGATTCCGTAGTCGCTTCCGCTCGAGCTTGATGCGCTCCTGGGA 60481 Query 241609 CTCCATGTCGATCGG 241623 ||||||||||||||| Sbjct 60482 CTCCATGTCGATCGG 60496 >seq9254 Length=4138565 Score = 107 bits (118), Expect = 4e-18 Identities = 166/237 (70%), Gaps = 0/237 (0%) Strand=Plus/Plus Query 48130 GCAGGCAAAGTCCCTGTGCAAGCCTTCGTCCCGGCTGATGAGCACGTTGGAGAAGCAGAG 48189 ||| |||||||| | ||||||||| ||||| || || ||| |||| |||||| | Sbjct 2197227 GCAAGCAAAGTCACAGTGCAAGCCCTCGTCACGCGAAATCAGCTCGTTCGAGAAGGTCAA 2197286 Query 48190 ACCAGGCATGACCCCCCTCTGTTTGAGCCAGAAAATTGCCGCGAAAGAGCCAGAGAAGAA 48249 || ||||| | || | || || |||||||| || || || || ||| |||||| Sbjct 2197287 GCCTGGCATCAGTCCTCGCTTCTTAAGCCAGAAGATAGCGGCAAAGCTGCCGCTGAAGAA 2197346 Query 48250 GATGCCCTCCACTGCCGCGAACGCGGTGAGCCTCTCTCCGAAAGAAGCGTTCTTGTCTGA 48309 || ||||| || || || |||||| | | ||| ||||| || |||||| || Sbjct 2197347 AATTCCCTCGACGGCGGCAAACGCGACAACACGCTCGCCGAAGTTGGCTTTCTTGCTCGA 2197406 Query 48310 GATCCAGGAAAGCGCCCAGTCTGCCTTCTTCTTGATGCATGGCATCGTCTCTATGGC 48366 |||||| || |||||||| ||||||||||| | || || | ||| || ||||| Sbjct 2197407 AATCCAGTTCAGTGCCCAGTCAGCCTTCTTCTTCACACACGGTAGCGTTTCGATGGC 2197463 Score = 84.2 bits (92), Expect = 4e-11 Identities = 159/234 (68%), Gaps = 0/234 (0%) Strand=Plus/Plus Query 48424 GTACATCTCAGAGTGCACATTCTCTATAGCGATCTGGAACCCGTAGAAGGCCCTGGCCTC 48483 ||||||||| ||| || || || || ||||||||||| || |||||| | || || Sbjct 2197600 GTACATCTCGCTGTGGACGTTTTCCATCGCGATCTGGAAACCATAGAAGCAGCGCGCTTC 2197659 Query 48484 AAACACCTGCACTTCTGTGGAGAATCTCTCCAGCAGATTCTCATTGACTATCCCATCTGA 48543 |||||||||||| | ||||| || | ||||||||| ||||| || || || || Sbjct 2197660 GGTCACCTGCACTTCCTGGCTGAATCGTTCGACCAGATTCTCGTTGACGATTCCGTCCGA 2197719 Query 48544 AGCAGCAAAGAAGGCAAGGACATGTTTAAGGAAATGGCGCTCGTTGTGGGTGAGAGCATT 48603 || || ||||| || || || || | ||| || || ||| | | | | | | Sbjct 2197720 TGCGGCGAAGAAAGCGAGCACGTGCGAGATGAAGTGACGTTCGCTCGGTTTCAACGACTC 2197779 Query 48604 CCAGCCCTGTACGTCTTTGCCCAGGTCCACTTCTTCCACAGTCCAGAAGGACGC 48657 |||| ||| | ||| || ||||| || || || || |||||||| || || Sbjct 2197780 CCAGTCCTTCATGTCCTTCGAGAGGTCTACCTCCTCTACCGTCCAGAAAGATGC 2197833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 931421109217280