Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq9207 251 1e-61 seq9254 95.1 2e-14 >seq9207 Length=1443628 Score = 251 bits (278), Expect = 1e-61 Identities = 706/1068 (66%), Gaps = 38/1068 (4%) Strand=Plus/Minus Query 221356 CACCGGACTCCCATCGTACGACTCGTAGGGACCGTACAGTTCGGCCTGGGCGCAAGACTG 221415 |||||||| || ||||||| ||||| ||||||| | ||||| | || | | Sbjct 1178586 CACCGGACAGCCCTCGTACGTTTCGTACGGACCGTCGCGGGCGGCCAACTCACA-GCTAG 1178528 Query 221416 CGTC-AGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTG-GCCTCG 221473 | || || || | | ||||||||||||||||||| || ||| || || ||| || || Sbjct 1178527 CCTCCAGAGCGCCATAGTAGATGGTCTCAAAGATCTGCTGGTTCAG-CTTTTGTGCTTCC 1178469 Query 221474 GGAGAAGTGAAGGGCATACGCAGCATCTGAAAGA---CGTCGGCCAGTCCCTGTACTCCG 221530 | | | || | | |||| ||| || | ||||||| |||||| || ||| Sbjct 1178468 TCACTTTCGTACGG---ATGGCGCATGAGAATGAACGCATCGGCCATTCCCTGCACGCCG 1178412 Query 221531 ATACCGATGGGCCTGTGTCTCCTGTTGGAAGCGGCCGCTTCTGGCACGGGATAAAAGTTG 221590 |||||||| || | ||| | | |||||||| ||| || ||||| || || ||||| Sbjct 1178411 ATACCGATAGGTCGGTGGCGCATGTTGGAACGCTTCGCCTCCGGCACCGGGTAGTAGTTG 1178352 Query 221591 ACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGG 221650 | |||||| | ||||| ||||| | |||| || || | ||||| |||||||| Sbjct 1178351 ATGTCGATGATTTTGTTCAGGTTGCGCGTGACGATCTTGGCGACCTCCTTCAGCTTC--- 1178295 Query 221651 TGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACG 221710 || || ||| ||| | | || |||||| ||| || |||| Sbjct 1178294 ---------ACGAAGTCGTA--CGT-GCGATCCGGCCTCACAAACATGTTCAGCGCAATC 1178247 Query 221711 CTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAG 221770 ||||| || ||||| || | |||||||| | |||| | |||||| || || Sbjct 1178246 GACGCCAGATTGCACACCGCAATTTCGTCCTTCGACGAGTACTCGACGATCTCCGTGCAC 1178187 Query 221771 AGGTTGCTGCACTTGATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCGTCC 221830 ||||| ||||||||| || |||| || | || || ||| || ||| || ||| Sbjct 1178186 AGGTTCGAGCACTTGATCGTGCCCACGTTCTGCTGGTTGCTCTTCCGGTTGCACGCATCC 1178127 Query 221831 TTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAGAGT 221890 ||||||||||| | || |||| ||||| | ||| | | | | ||| | ||| || Sbjct 1178126 TTGTAGAGCATGTACGGCACGCCCGTCTCGACCTGCGACTCGATGATCGCGAACCACAGA 1178067 Query 221891 TCTCTG-GCGCTCACCGTCCTCTTGACTGCACCCTCGGTCTTTTCATACCCGGTATAGAG 221949 || ||| || ||||| || ||| ||| || ||| || || || || || || Sbjct 1178066 TC-CTGCGCCTTCACCTGCCGGATGAACCGACCTTC---CTTCTCGTAGCCCGTGTACAG 1178011 Query 221950 CATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGACACATCAG 222009 | ||||||| ||| || ||| ||| ||| || || || | |||||||| || Sbjct 1178010 CCGCTCAAACTCTTCGCCCCACGACTCCGACAGCCCGGGGCAGTCGTGCGGACACATAAG 1177951 Query 222010 ACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCACAGCGCCTG 222069 ||||| | ||| | | |||| || |||||| || ||||| | ||||||||| | Sbjct 1177950 GCTCCACATTTCGTTCGCCTCCACCCGCTTCATGAACAGATCCGGCACCCACAGCGCGTA 1177891 Query 222070 AAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCCAAAAACTC 222129 || | || | | || ||||||| ||| |||||||| ||||||| | |||||| Sbjct 1177890 GAACATGTCACGCGCACGGACCTCCTCCTTGCCAGTGTTTTTCTTCAGATCGAGAAACTC 1177831 Query 222130 AAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGCTTGTTGCC 222189 ||| | || | ||||||||||| || |||| ||| | || ||||| ||||||||||| Sbjct 1177830 AAACACATCGCCATGCCACGGCTCGAGGTAGATGGCGAACGCACCGGGACGCTTGTTGCC 1177771 Query 222190 ACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACCAGTCCGTT 222249 ||||| ||||| || || |||| ||| || || |||| |||| ||||| Sbjct 1177770 GCCCTGGTCCACATACCGGGCCGTGTTGTTGTAGACACGCAGCATCGGAACCAACCCGTT 1177711 Query 222250 GGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG-GCA--GA 222306 ||| |||||| |||||| |||||||| ||| |||| || | | | ||| Sbjct 1177710 GGAGATACCGTTCGTGCCCGCAATGTACGTACCCTTCGCCC---GGATGCAGTGCACGTT 1177654 Query 222307 CATGCCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTGTCCATGAT 222366 || || || || |||||| || ||||||| ||||| ||| || ||||| || Sbjct 1177653 CAGACCAATGCCTCCGGCGGACTTGGAGATCAGTGCGCACTGCTTCAGCGTGTCGTAAAT 1177594 Query 222367 GCCCTCCATAGAGTCCTCCTTGA-CGTTCAGCAGAAAACAAGACGACA 222413 ||||| ||| ||| ||| | |||| || ||||| || ||||||| Sbjct 1177593 TCCCTCGATACTGTCGTCCGACATCGTT-AGGAGAAAGCAGGACGACA 1177547 Score = 102 bits (112), Expect = 2e-16 Identities = 98/126 (78%), Gaps = 0/126 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| ||||| ||||| || ||||| ||||| | || | ||| | ||| |||||| |||| Sbjct 1178817 GTTGACCACCTGGAACTCGCCCGACAGCACGCGCCGATTGTAGACGTTCGAAGTGTACGG 1178758 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 |||| ||||||||||||||| || || |||||| |||||| ||||| ||||||| Sbjct 1178757 CTCGAACGACTCGTTGTTGCCCAGAATTTGGGCCGTGGAGGCGGTCGGCATCGGTGCCAG 1178698 Query 221236 CAGCAG 221241 ||| || Sbjct 1178697 CAGGAG 1178692 >seq9254 Length=4138565 Score = 95.1 bits (104), Expect = 2e-14 Identities = 172/249 (69%), Gaps = 2/249 (1%) Strand=Plus/Minus Query 25786 CTGTTTGGTGCCATCGAGCACATACCCAGCATCAAGAGGAAGGCGCGGTGGGCCATGAAG 25845 ||||| ||||||||| |||| | | |||| |||||| ||||| |||| Sbjct 2197472 CTGTTCAATGCCATCGAAACGCTACCGTGTGTGAAGAAGAAGGCTGACTGGGCACTGAAC 2197413 Query 25846 TGGATCAACAGCCAGAGCGCTACGTTTGGCGAGCGGCTGGTAGCCTTTGCTGCTGTGGAG 25905 ||||| ||| ||| || | || |||||||| | || || ||||| || || ||| Sbjct 2197412 TGGATTTCGAGCAAGAAAGCCAACTTCGGCGAGCGTGTTGTCGCGTTTGCCGCCGTCGAG 2197353 Query 25906 GGCATCTTTTTCAGCGGTTCGTTTGCGGCCATCTTCTGGCTCAAGCAGAAGGGGAC-CAT 25964 || || || |||||||| ||||| || ||||||||||| ||| || | |||| || Sbjct 2197352 GGAATTTTCTTCAGCGGCAGCTTTGCCGCTATCTTCTGGCTTAAGAAG-CGAGGACTGAT 2197294 Query 25965 GCCCGGGCTGTACTTTTCCAACGAGCTCATCAGCAGGGACGAGGGTCTCCACAGAGATTT 26024 ||| || || ||| || |||||||| || | |||||||| | ||| | || || Sbjct 2197293 GCCAGGCTTGACCTTCTCGAACGAGCTGATTTCGCGTGACGAGGGCTTGCACTGTGACTT 2197234 Query 26025 TGCCTGCCT 26033 ||| ||||| Sbjct 2197233 TGCTTGCCT 2197225 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928733431508480