Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_020852.1 Length=186468 Score E Sequences producing significant alignments: (Bits) Value seq9254 116 4e-21 seq9207 111 2e-19 >seq9254 Length=4138565 Score = 116 bits (128), Expect = 4e-21 Identities = 276/413 (67%), Gaps = 12/413 (3%) Strand=Plus/Plus Query 177559 TCAACAAACTGCCTCACAGAGTGTGTCTCCCCCGTCGCGACAACATATTCATCAGCCTCT 177618 || ||||||| || ||| ||||| |||||||| || |||| ||| | || || | | Sbjct 2756266 TCCACAAACTCCCGCACCGAGTGCGTCTCCCCAGTGGCGATGACAAAATCTTCCGGTTTG 2756325 Query 177619 TCTTGTTGAAGCATGAGCCACATGGCTTCAACATAGTCCTTGGCATGACCCCAGTCTCTG 177678 || || || | ||| ||||||||||| || || ||||| |||||||| |||||||| | Sbjct 2756326 TCCTGCTGCATCATTAGCCACATGGCCTCCACGTAGTCTTTGGCATGCCCCCAGTCACGC 2756385 Query 177679 GCAGCGTTGAGGTTACCGAGTTCAAGGAACTCTCTCTCACCTTTCACAATTTGTTTGACG 177738 | || || || || || || | | |||| || || | |||| || Sbjct 2756386 TTGGAGTCAAGATTGCCCAGCTCCAAGCACTCCTGCTGGCCAAGCGAGATTT-----TCG 2756440 Query 177739 CCA-TCA----GTAATCTTCTTTGTGACAAAGTCGGCACCTCGTCTCGGTGATTCGTGGT 177793 ||| | | || ||||| |||||||| | | || || | ||| || ||||||| Sbjct 2756441 CCACTGACCGGGTTATCTTGCGGGTGACAAAATTCTCTCCCCGCCGCGGAGACTCGTGGT 2756500 Query 177794 TGAAGAGGATTCCGGAGCAGGCATACATACCATAGGATTCTCGGTAATTTTTGACGAGCC 177853 | || || || || ||||||| |||| | || | ||| ||||||||| | || | || Sbjct 2756501 TAAAAAGAATGCCATTGCAGGCAAACATGTCGTACGCTTCGCGGTAATTTATCACAATCC 2756560 Query 177854 AGTGAGCGGCCAATTTGG-AGACGCCATAGACGGATCGTGGGTAGAAGGGTGTCTCCTCA 177912 ||| || || |||| | | | | || || || || ||||||||||| | ||| Sbjct 2756561 AGTAGCCGTACATCTTGGCACAAG-CGTACGGCGAACGCGGATAGAAGGGTGTTTTTTCA 2756619 Query 177913 GTTTGTGGAGTTTCTCGGACTTTACCAAACATCTCCGAAGTTGAGGCTTGGTA 177965 | ||||| ||||| || || || | | ||||||||| || || ||||| Sbjct 2756620 TTCTGTGGCGTTTCCACCACCTTGCCGTAAAGCTCCGAAGTGGATGCCTGGTA 2756672 >seq9207 Length=1443628 Score = 111 bits (122), Expect = 2e-19 Identities = 435/676 (64%), Gaps = 11/676 (2%) Strand=Plus/Plus Query 75917 CCATATATGCTTTACAAGGATGCTTGTAACAAGAAGAGTAACCAAAAGAATTTGGGAACA 75976 || || ||||| ||||||||||| || ||| |||||| ||||| |||| |||| || Sbjct 1178110 CCGTACATGCTCTACAAGGATGCGTGCAACCGGAAGAGCAACCAGCAGAACGTGGGCACG 1178169 Query 75977 ATCAAGAGCTCAAATCTTTGCACGGAAATTTTAGAGTACACAGATAAGGATGAGACGGCT 76036 |||||| |||| || || |||||||| || | |||||| | ||||| || | || Sbjct 1178170 ATCAAGTGCTCGAACCTGTGCACGGAGATCGTCGAGTACTCGTCGAAGGACGAAATTGCG 1178229 Query 76037 GTTTGCAATTTGGCATCAATCGCCCTTCCAAAGTATGTCAATGAAGAGACTCGCACTTTT 76096 || |||||| |||| || || || || | || ||| | || |||||| | Sbjct 1178230 GTGTGCAATCTGGCGTCGATTGCGCTGAACATGTTTGTGAGGCCGGA---TCGCACGTAC 1178286 Query 76097 GATTATGAAAAACTTCATGAAATCACAAAGATTGTTACCAAAAATCTAAACCGAGTCATT 76156 || | | || || | || || | ||||| || || || || ||| | |||| Sbjct 1178287 GACTTCGTGAAGCTGAAGGAGGTCGCCAAGATCGTCACGCGCAACCTGAACAAAATCATC 1178346 Query 76157 GACAGAAATTTTTATCCCGTTGAGACTGCGCGAA--AGTCTAATATGCGACACAGACCTA 76214 |||| || | || |||| || | ||||| || || ||||| ||| |||||| Sbjct 1178347 GACATCAACTACTA-CCCGGTGCCGGAG-GCGAAGCGTTCCAACATGCGCCACCGACCTA 1178404 Query 76215 TTGGTTTGGGTGTTCAAGGTCTCGCGGATGTATTTATTTTGTGCCGCTACGCATTTGATT 76274 | ||| | || || || || | || |||| || ||| | ||| | | | || Sbjct 1178405 TCGGTATCGGCGTGCAGGGAATGGCCGATGCGTTCATTCTCATGCGCCATCCGTACGAAA 1178464 Query 76275 CAGATGAAGCCAAGGAGATGAATGCTCGTATCTTTGAAACCATGTATCACGCATCCCTGG 76334 || ||||| | || |||| | |||||||| ||||| || | | | |||| Sbjct 1178465 GTGAGGAAGCACAAAAGCTGAACCAGCAGATCTTTGAGACCATCTACTATGGCGCTCTGG 1178524 Query 76335 AGGCGAGTTGTGAATTGGCTGAAGCCCAAGGTTCCTATGAGACATTTGAGGGTTCTCCCG 76394 |||| || ||||| ||||| | | | ||| | || || || | ||||| | ||| | Sbjct 1178525 AGGCTAGCTGTGAGTTGGCCGCCCGCGACGGTCCGTACGAAACGTACGAGGGCTGTCCGG 1178584 Query 76395 CGTCCCAAGGGGTGCTTCAGTTTGATATGTGGGAAGGTGAAACCAAGCTCAACTACG--A 76452 | | | || | || |||| || ||||||| || || |||| | | || | | Sbjct 1178585 TGAGCAAGGGAATCCTGCAGTACGACATGTGGG-AGAAGACCCCAA-CGGACCTGTGGAA 1178642 Query 76453 CTGGGATGTTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGC 76512 ||||| | || |||||| || || | ||| | || || || || |||| Sbjct 1178643 CTGGGCCGAGCTGAAGGAAAAGATTGCCAAGCATGGTATCCGGAATTCGCTCCTGCTGGC 1178702 Query 76513 ACCAATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCATA 76572 ||| ||||| || |||||||| || ||||| |||| || || || | || || || || Sbjct 1178703 ACCGATGCCGACCGCCTCCACGGCCCAAATTCTGGGCAACAACGAGTCGTTCGAGCCGTA 1178762 Query 76573 CACAACAAACATCTAC 76588 ||| | ||| ||||| Sbjct 1178763 CACTTCGAACGTCTAC 1178778 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 596498071304960