Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq8468 104 7e-17 seq9207 87.8 5e-12 seq8981 86.0 2e-11 >seq8468 Length=78740 Score = 104 bits (114), Expect = 7e-17 Identities = 186/266 (70%), Gaps = 8/266 (3%) Strand=Plus/Plus Query 302575 TCCATACTCTTGATTAAACGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTA 302634 |||||| ||| || | ||||||||| || ||||| ||| | || || || || ||| Sbjct 38242 TCCATAGCCTTAATGAGACGACGCTGGATGTAACCGGTTTCGGCCGTCTTGACGGCGGTA 38301 Query 302635 TCAATTAGACCAACACGACCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCC 302693 || || | ||| ||||||| ||||| || |||||| | | ||| || ||| || || Sbjct 38302 TCGATCAAACCCTCACGACCGCCCATGGCGTGGAAGTAGAACTCGGTAGG-CGTCAGTCC 38360 Query 302694 CCCAATAAAGGAGCTCTCAACGAAACCACGCGCCTCGGG--CG-AATCGTCGAACTTGGT 302750 | | | ||| | || ||||| ||||||| |||||| || |||| || |||| | Sbjct 38361 GGCCAGGTACGAGTTTTCCACGAAGCCACGCGACTCGGGACCGTAATCATC---CTTGAT 38417 Query 302751 AAAGTGTGGCAGGGTCCTGTTCTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTG 302810 || || |||||||| | || | ||| |||| || ||||| || || |||||||| Sbjct 38418 GAAATGGGGCAGGGTGCGCTTGCGGAACCCGAATGGAATGCGCTTACCCTCGACGTTCTG 38477 Query 302811 CTGTCCCAGGCACGAAATCATCTGCG 302836 ||| |||| ||| | ||| | || || Sbjct 38478 CTGACCCACGCAAGCAATAACCTACG 38503 >seq9207 Length=1443628 Score = 87.8 bits (96), Expect = 5e-12 Identities = 127/177 (72%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 155571 ACAAACATACCAAGACCAATAGACGCCAGATTACATACCGCAGTCTCCTTGT-CGTCGCT 155629 |||||||| || |||| ||||||||||| || |||||| | || | | || || Sbjct 1178267 ACAAACATGTTCAGCGCAATCGACGCCAGATTGCACACCGCAATTTCGTCCTTCGACGA- 1178209 Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || || ||||| ||||||||| || | |||||| ||||| | |||| |||||| Sbjct 1178208 GTACTCGACGATCTCCGTGCACAGGTTCGAGCACTTGATCGTGCCCACGTTCTGCTGGTT 1178149 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTG 155746 || | ||| || ||||||||||| || ||||| || || ||||| | ||| Sbjct 1178148 GCTCTTCCGGTTGCACGCATCCTTGTAGAGCATGTACGGCACGCCCGTCTCGACCTG 1178092 >seq8981 Length=1360667 Score = 86.0 bits (94), Expect = 2e-11 Identities = 130/179 (73%), Gaps = 12/179 (7%) Strand=Plus/Plus Query 251485 GCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGACCACCATCGCGA 251544 || |||||||||||| |||||| |||||||| ||||||||||| || ||||| ||||| Sbjct 1107682 GCTCCGTGTGAAATCTGACAATCGCGCTCCATCTCACCGAAACGCAGGCCACCGTCGCGT 1107741 Query 251545 GCCCTACCCTC----GGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGGAGCG-GC 251599 || | |||||| || ||| ||||| || | ||| |||||| |||| || Sbjct 1107742 GCACGACCCTCCATCGGTTGGCGCACGAG-GATCTGCACC---GGACCGC--GAGCACGC 1107795 Query 251600 TA-TGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCGGGACCGATGAA 251657 | || ||| || | ||||| ||||| |||||||||||| | | || |||| ||| Sbjct 1107796 GAGTGAATCTTGTCGTCCACCATGTGCTTCAGACGCTGGTAGTAGGTCGGGCCGAGGAA 1107854 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471636717296504