Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq9207 122 1e-21 seq9249 109 7e-18 seq9254 104 3e-16 seq8875 100 3e-15 seq8803 91.5 2e-12 seq8981 89.7 6e-12 >seq9207 Length=1443628 Score = 122 bits (134), Expect = 1e-21 Identities = 160/222 (72%), Gaps = 0/222 (0%) Strand=Plus/Minus Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121 || |||||| || || || ||||||| ||| |||| || ||||| || || | ||||| Sbjct 1177770 GCCCTGGTCCACATACCGGGCCGTGTTGTTGTAGACACGCAGCATCGGAACCAACCCGTT 1177711 Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181 ||| ||||| |||||||| | ||| | || || || | |||| || | Sbjct 1177710 GGAGATACCGTTCGTGCCCGCAATGTACGTACCCTTCGCCCGGATGCAGTGCACGTTCAG 1177651 Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241 || ||||| ||||| ||||||||||| || |||||||| || ||||||||||| || || Sbjct 1177650 ACCAATGCCTCCGGCGGACTTGGAGATCAGTGCGCACTGCTTCAGCGTGTCGTAAATTCC 1177591 Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGA 1630283 |||||| |||| || ||| | ||||||||| ||||| Sbjct 1177590 CTCGATACTGTCGTCCGACATCGTTAGGAGAAAGCAGGACGA 1177549 Score = 118 bits (130), Expect = 1e-20 Identities = 329/502 (66%), Gaps = 16/502 (3%) Strand=Plus/Minus Query 1626984 GTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCGGT 1627043 ||| || ||||||||||| |||| |||| ||| |||||||||||||||||||||| || Sbjct 1179162 GTCCACCGTAAACTGGATCGCGTTCACGGCCGGCTTGGTGCGCAGATAGTACATGCCCGT 1179103 Query 1627044 CTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCG-TCGCGT 1627102 ||| ||||| ||| ||||| ||| |||||||| | || | | | ||| | Sbjct 1179102 CTTCAGGCCCATCTTCCAGCCGTAGAAGTGAATCGACGTCA-GCTTGCCGTAGTTCGGTT 1179044 Query 1627103 CGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCGCCA 1627162 |||| || | ||||| ||||||| ||| |||| | | | || || || |||| Sbjct 1179043 CGGCCACGTGAATGTTGAACGACTGGGACTGATCGATGAACGCACCCCGGTCCGCGGCCA 1178984 Query 1627163 TGTCGATGGTGACCCGGTT----GGGCACCTCCCACACGGTCTTGAAGATGGCCTTGAGG 1627218 | | |||| | || || | | ||||||||| |||||| | | | | || | Sbjct 1178983 TTTTGATG----CACGTTTTCACCGATATCTCCCACACCGTCTTGTACAGGTCGCGGATG 1178928 Query 1627219 TCGGGCGGCACCTCGTCGTCGCCAAAGCCCTGCACCGAGCCGTGCGCCGCGACGAGCCTG 1627278 | |||| | || ||| | | ||| | ||| |||| ||| | || | Sbjct 1178927 TGCTGCGGAATTTCCTCG------ATCCGCTGTATCGAACCGTTGTGCGCAAGGATTTGG 1178874 Query 1627279 TCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTG 1627338 | | ||| |||||||||| | | |||| || | ||| ||| ||||| Sbjct 1178873 TTCTTCATATCGTCATCCCACAGGCCGAGTTCGGTCAGATCCTGCAGCAGATGGTGGTTG 1178814 Query 1627339 ACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCG 1627398 ||||| || |||||||| |||||||| || |||||| ||| ||| |||| Sbjct 1178813 ACCACCTGGAACTCGCCCGACAGCACGCGCCGATTGTAGACGTTCGAAGTGTACGGCTCG 1178754 Query 1627399 CACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGG 1627458 ||| |||| |||||||||| || || | ||| | ||| || ||||| | |||| ||| Sbjct 1178753 AACGACTCGTTGTTGCCCAGAATTTGGGCCGTGGAGGCGGTCGGCATCGGTGCCAGCAGG 1178694 Query 1627459 AGCGAGTTGCGCAGGCCGTGCT 1627480 ||||| || || | || |||| Sbjct 1178693 AGCGAATTCCGGATACCATGCT 1178672 Score = 116 bits (128), Expect = 5e-20 Identities = 120/156 (77%), Gaps = 2/156 (1%) Strand=Plus/Minus Query 1628154 CGACGAAAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTG 1628213 |||||| ||| ||||||||| ||||||||||| | || | |||| |||| |||||| Sbjct 1178214 CGACGAGTACTCGACGATCTCCGTGCACAGGTTCGAGCACTTGATCGTGCCCACGTTCTG 1178155 Query 1628214 CTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGAT 1628273 ||||||| | || ||||| || ||||||| ||||||||| ||| |||| ||||||| Sbjct 1178154 CTGGTTGCTCTTCCGGTTGCACGCATCCTTGTAGAGCATGTACGGCACGCCCGTCTCGAC 1178095 Query 1628274 CTGCGCCGCGACGATGGCCGAC--CAGATCTGGCGC 1628307 ||||| | ||| ||| || || |||||| |||| Sbjct 1178094 CTGCGACTCGATGATCGCGAACCACAGATCCTGCGC 1178059 Score = 91.5 bits (100), Expect = 2e-12 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 1627864 AACACGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGG 1627923 ||| | ||||| | ||||||||||||| || || || |||||||||| ||| || | Sbjct 1178438 AACGCATCGGCCATTCCCTGCACGCCGATACCGATAGGTCGGTGGCGCATGTTGGAACGC 1178379 Query 1627924 CGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACG 1627983 ||||| ||||||||||||| |||||||||||| | ||| ||||||| | ||| Sbjct 1178378 TTCGCCTCCGGCACCGGGTAGTAGTTGATGTCGATGATTTTGTTCAGGTTGCGCGTGACG 1178319 Query 1627984 ACCTGGACGATCTCGTGCAG 1628003 | || | ||| ||| | ||| Sbjct 1178318 ATCTTGGCGACCTCCTTCAG 1178299 >seq9249 Length=5918260 Score = 109 bits (120), Expect = 7e-18 Identities = 146/203 (72%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405 ||||||| || || ||| | ||| || ||||||||||| |||||||| | ||| | Sbjct 13260 TGGCCAGCTCACCCGGCAACAGCAGCCGGACGGCGGTCTGAATCTCGCGGGACGTGATGG 13201 Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465 | ||| ||||| |||||||||| ||| || || | | || || |||| |||| Sbjct 13200 TCGAGCGTTTGTTGTAGTGCGCCAGCCGGGACGCTTCCGCTGCAATCCGCTCGAAGATGT 13141 Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525 ||||||| || |||||| | ||| | |||| |||||||| ||| || || | Sbjct 13140 CGTTGACGAAGCTGTTCATAATGCTCATGGCCTTGGACGAGATGCCGGTGTCCGGATGGA 13081 Query 1254526 CCTGCTTGAGCACCTTGTAGATG 1254548 ||||||| ||||||||||||||| Sbjct 13080 CCTGCTTCAGCACCTTGTAGATG 13058 >seq9254 Length=4138565 Score = 104 bits (114), Expect = 3e-16 Identities = 159/226 (70%), Gaps = 7/226 (3%) Strand=Plus/Plus Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233 ||| | || ||||| || |||| ||||| |||| | ||| ||||| || || Sbjct 2197243 TGCAAGCCCTCGTCACGCGAAATCAGCTCGTTCGAGAAGGTCAAGCCTGGCATCAGTCCT 2197302 Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 869293 |||||||| ||||| ||||| ||| || ||||| ||| || || |||||||||||| Sbjct 2197303 CGCTTCTTAAGCCAGAAGATAGCGGCAAAGCTGCCGCTGAAGAAAATTCCCTCGACGGCG 2197362 Query 869294 GCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG--ATCCACTTCA 869351 ||||| ||| | |||||| | ||| | ||| || | | | ||||| |||| Sbjct 2197363 GCAAACGCGACAACACGCTCGCCGAAGTT-----GGCTTTCTTGCTCGAAATCCAGTTCA 2197417 Query 869352 TCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGC 869397 |||||||| ||||| ||| |||| |||| | ||| |||||||| Sbjct 2197418 GTGCCCAGTCAGCCTTCTTCTTCACACACGGTAGCGTTTCGATGGC 2197463 Score = 98.7 bits (108), Expect = 1e-14 Identities = 162/231 (70%), Gaps = 2/231 (1%) Strand=Plus/Plus Query 869635 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGAC 869694 ||||| ||| || || ||||||||||| || || ||| | | | || | ||| || || Sbjct 2197612 GTGGACGTTTTCCATCGCGATCTGGAAACCATAGAAGCAGCGCGCTTCGGTCACCTGCAC 2197671 Query 869695 CTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAA 869754 |||| |||| || || |||| |||||| ||||| ||||| |||||||| || Sbjct 2197672 TTCCTGGCTGAATCGTTCGACCAGATTCTCGTTGACGATTCCGTCCGATGCGGCGAAGAA 2197731 Query 869755 AGCCAGGACGTGCTTGATAAAGTGGCGCTCG-TCGTCGCTGAGCGACACCCAGTGGACGG 869813 ||| || |||||| ||| ||||| || ||| ||| | | |||| |||||| Sbjct 2197732 AGCGAGCACGTGCGAGATGAAGTGACGTTCGCTCG-GTTTCAACGACTCCCAGTCCTTCA 2197790 Query 869814 TGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864 |||| |||||| |||||||| | ||||||| || |||||||||| Sbjct 2197791 TGTCCTTCGAGAGGTCTACCTCCTCTACCGTCCAGAAAGATGCCTCGGCCT 2197841 >seq8875 Length=3622691 Score = 100 bits (110), Expect = 3e-15 Identities = 138/193 (72%), Gaps = 0/193 (0%) Strand=Plus/Plus Query 1592108 AAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACC 1592167 |||||||| || |||||| |||||||| || || | || || || || Sbjct 1649364 AAGCGCACGGATGACATCAGCTCGTGGGACGCCGACTTCCTGAAAGTTGATCAAGGTACA 1649423 Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227 || || ||| |||| || || ||||||||| | ||||| ||| ||||| ||| | Sbjct 1649424 CTGTTCGAGCTGATTCTGGCTGCCAACTACTTGGACATTAAGGGCCTGCTTGATGTGACC 1649483 Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287 ||||| | || ||||||||||||||||| || | || || |||||||||||||| || Sbjct 1649484 TGCAAAACCGTCGCCAACATGATCAAGGGTAAAACCCCGGAAGAGATCCGCAAGACGTTC 1649543 Query 1592288 AACATCAAGTACG 1592300 || |||||| ||| Sbjct 1649544 AATATCAAGAACG 1649556 >seq8803 Length=21403 Score = 91.5 bits (100), Expect = 2e-12 Identities = 244/362 (67%), Gaps = 21/362 (6%) Strand=Plus/Minus Query 1852044 CGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTGAGGCCCGGCACGA 1852103 ||||||| || | ||||||||| ||||||||| | ||| || ||||| | | Sbjct 11376 CGATCTTCGAATCTTCCTCGCTGGAAGACATCTTGCCAC---CGGCCAGTCCCGGTATCA 11320 Query 1852104 GCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGT-CGCGCGCA 1852162 |||||| | || || | |||||| || || || ||| |||| | | || | Sbjct 11319 TCGGGTTCATGAGATGAATGCGCTTGGCGTAACCCAGCTGCGGTAGGTACTTCTCGGCGA 11260 Query 1852163 AAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 1852222 ||| ||| ||||| ||||| || || || ||||| ||||| || | ||||| || Sbjct 11259 AAGTGAAA-ATCTTCCGCTGATCAATGCCACCGAACTGTGCGTCCACCTTGAGGTACTCT 11201 Query 1852223 TCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTGCGGTCCATC 1852282 ||||| || ||||||| ||||||||| | | | || || |||| | |||| | Sbjct 11200 TCGTCCAGCGCCTGCAGTCCCGGGTAGAGAATGCCGGACATCAGTGGGT---GTTCCACC 11144 Query 1852283 T---TGACCACCTGAGCGGCGGCCT--TTTGCGCCGTGCCGGTGCG-CACGTGCGCCGCG 1852336 | ||||||||| || |||||| |||||| ||||| |||| |||| || || Sbjct 11143 TGCTTGACCACCTCGGCACCGGCCTTCTTTGCGTCGTGC---TGCGTCACGACCGACGAC 11087 Query 1852337 AGTCGGTAGAGGTCGAGCGCGTAGGCGCCGCCG-CA-CTGGTACTCGGTGCCGCGCACAA 1852394 || ||||| | ||| || | ||| | || | || |||||| ||||| || ||||| | Sbjct 11086 AGGCGGTACACGTCCAGGGTGTA--CTCCTTGGACAGCTGGTAGTCGGTTCCTCGCACGA 11029 Query 1852395 AC 1852396 || Sbjct 11028 AC 11027 >seq8981 Length=1360667 Score = 89.7 bits (98), Expect = 6e-12 Identities = 203/294 (69%), Gaps = 11/294 (4%) Strand=Plus/Minus Query 733017 GTGGTGGTGACGCGCAACGGCGACGGCGCCAACGCCGTCAAGATC-GTGACGCGCGCCAT 733075 ||| || |||||| |||| |||| || ||| | ||||||| ||| |||| | | Sbjct 1108259 GTGATGCTGACGCTCAACAGCGAGGGATACAAGTTCTGCAAGATCCGTGT-GCGCTCGGT 1108201 Query 733076 GCGCCAGCCCG-AGTTGGGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTGG 733134 ||| | |||| || | |||||||| | | ||||| ||||| || ||||| ||| | Sbjct 1108200 GCGT-ATCCCGCAGATTGGCGACAAGTTTGCATCGCGGCACGGGCAGAAGGGAACCTGCG 1108142 Query 733135 GCAGC--GTGCGCTCCACCGAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGA 733192 ||| || | | || ||||| ||||| | || | | ||| ||| ||||| || Sbjct 1108141 GCATTCAGTAC-CGGCAG-GAGGATATGCCGT--TCAC-GTGCGAGGGCATTACGCCGGA 1108087 Query 733193 CATCGTGATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAGGC 733252 ||| | |||||||||||||||||||||||||| ||||| || || | || ||||| Sbjct 1108086 CATTATCATCAACCCGCACGCCATCCCGTCGCGTATGACAATCGGGCATTTGATCGAGTG 1108027 Query 733253 CCTCCTGGGCAAGGTGGCCTGCCGCGAGGGCTACATCGGCGACGGCACGCCCTT 733306 | | | ||| ||| | | || | ||||| | |||||||| | ||| || || Sbjct 1108026 CATTCAGGGTAAGCTCGGCTCGAACAAGGGCGAAATCGGCGATGCCACACCGTT 1107973 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6106352035560664