Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14]
9,592 sequences; 220,777,669 total letters
Query= NC_021858.1
Length=1908524
Score E
Sequences producing significant alignments: (Bits) Value
seq9207 122 1e-21
seq9249 109 7e-18
seq9254 104 3e-16
seq8875 100 3e-15
seq8803 91.5 2e-12
seq8981 89.7 6e-12
>seq9207
Length=1443628
Score = 122 bits (134), Expect = 1e-21
Identities = 160/222 (72%), Gaps = 0/222 (0%)
Strand=Plus/Minus
Query 1630062 GCACTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTT 1630121
|| |||||| || || || ||||||| ||| |||| || ||||| || || | |||||
Sbjct 1177770 GCCCTGGTCCACATACCGGGCCGTGTTGTTGTAGACACGCAGCATCGGAACCAACCCGTT 1177711
Query 1630122 GGACTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAA 1630181
||| ||||| |||||||| | ||| | || || || | |||| || |
Sbjct 1177710 GGAGATACCGTTCGTGCCCGCAATGTACGTACCCTTCGCCCGGATGCAGTGCACGTTCAG 1177651
Query 1630182 GCCGATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCC 1630241
|| ||||| ||||| ||||||||||| || |||||||| || ||||||||||| || ||
Sbjct 1177650 ACCAATGCCTCCGGCGGACTTGGAGATCAGTGCGCACTGCTTCAGCGTGTCGTAAATTCC 1177591
Query 1630242 CTCGATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGA 1630283
|||||| |||| || ||| | ||||||||| |||||
Sbjct 1177590 CTCGATACTGTCGTCCGACATCGTTAGGAGAAAGCAGGACGA 1177549
Score = 118 bits (130), Expect = 1e-20
Identities = 329/502 (66%), Gaps = 16/502 (3%)
Strand=Plus/Minus
Query 1626984 GTCGACGGTAAACTGGATGGCGTCGGCGGCGGGCCTGGTGCGCAGATAGTACATGCCGGT 1627043
||| || ||||||||||| |||| |||| ||| |||||||||||||||||||||| ||
Sbjct 1179162 GTCCACCGTAAACTGGATCGCGTTCACGGCCGGCTTGGTGCGCAGATAGTACATGCCCGT 1179103
Query 1627044 CTTGAGGCCGCGGCGCCACGCGTAGGCGTGCATCGACGTGATGCGCTCGGGCG-TCGCGT 1627102
||| ||||| ||| ||||| ||| |||||||| | || | | | ||| |
Sbjct 1179102 CTTCAGGCCCATCTTCCAGCCGTAGAAGTGAATCGACGTCA-GCTTGCCGTAGTTCGGTT 1179044
Query 1627103 CGGCGCAGTACAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGATCGGCCGCCA 1627162
|||| || | ||||| ||||||| ||| |||| | | | || || || ||||
Sbjct 1179043 CGGCCACGTGAATGTTGAACGACTGGGACTGATCGATGAACGCACCCCGGTCCGCGGCCA 1178984
Query 1627163 TGTCGATGGTGACCCGGTT----GGGCACCTCCCACACGGTCTTGAAGATGGCCTTGAGG 1627218
| | |||| | || || | | ||||||||| |||||| | | | | || |
Sbjct 1178983 TTTTGATG----CACGTTTTCACCGATATCTCCCACACCGTCTTGTACAGGTCGCGGATG 1178928
Query 1627219 TCGGGCGGCACCTCGTCGTCGCCAAAGCCCTGCACCGAGCCGTGCGCCGCGACGAGCCTG 1627278
| |||| | || ||| | | ||| | ||| |||| ||| | || |
Sbjct 1178927 TGCTGCGGAATTTCCTCG------ATCCGCTGTATCGAACCGTTGTGCGCAAGGATTTGG 1178874
Query 1627279 TCGCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCAGGCGCTTGACCAGGTGGCGGTTG 1627338
| | ||| |||||||||| | | |||| || | ||| ||| |||||
Sbjct 1178873 TTCTTCATATCGTCATCCCACAGGCCGAGTTCGGTCAGATCCTGCAGCAGATGGTGGTTG 1178814
Query 1627339 ACCACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGTTGGTGATGACCTCG 1627398
||||| || |||||||| |||||||| || |||||| ||| ||| ||||
Sbjct 1178813 ACCACCTGGAACTCGCCCGACAGCACGCGCCGATTGTAGACGTTCGAAGTGTACGGCTCG 1178754
Query 1627399 CACGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGG 1627458
||| |||| |||||||||| || || | ||| | ||| || ||||| | |||| |||
Sbjct 1178753 AACGACTCGTTGTTGCCCAGAATTTGGGCCGTGGAGGCGGTCGGCATCGGTGCCAGCAGG 1178694
Query 1627459 AGCGAGTTGCGCAGGCCGTGCT 1627480
||||| || || | || ||||
Sbjct 1178693 AGCGAATTCCGGATACCATGCT 1178672
Score = 116 bits (128), Expect = 5e-20
Identities = 120/156 (77%), Gaps = 2/156 (1%)
Strand=Plus/Minus
Query 1628154 CGACGAAAACTGGACGATCTCGGTGCACAGGTTGGCCGACGTCGTCGTACCCAGGTTCTG 1628213
|||||| ||| ||||||||| ||||||||||| | || | |||| |||| ||||||
Sbjct 1178214 CGACGAGTACTCGACGATCTCCGTGCACAGGTTCGAGCACTTGATCGTGCCCACGTTCTG 1178155
Query 1628214 CTGGTTGGTGGTCAGGTTGACGGCGTCCTTGTGGAGCATGTAGGGCGCGCCGGTCTCGAT 1628273
||||||| | || ||||| || ||||||| ||||||||| ||| |||| |||||||
Sbjct 1178154 CTGGTTGCTCTTCCGGTTGCACGCATCCTTGTAGAGCATGTACGGCACGCCCGTCTCGAC 1178095
Query 1628274 CTGCGCCGCGACGATGGCCGAC--CAGATCTGGCGC 1628307
||||| | ||| ||| || || |||||| ||||
Sbjct 1178094 CTGCGACTCGATGATCGCGAACCACAGATCCTGCGC 1178059
Score = 91.5 bits (100), Expect = 2e-12
Identities = 104/140 (74%), Gaps = 0/140 (0%)
Strand=Plus/Minus
Query 1627864 AACACGTCGGCGAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGG 1627923
||| | ||||| | ||||||||||||| || || || |||||||||| ||| || |
Sbjct 1178438 AACGCATCGGCCATTCCCTGCACGCCGATACCGATAGGTCGGTGGCGCATGTTGGAACGC 1178379
Query 1627924 CGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTGCCCACCACG 1627983
||||| ||||||||||||| |||||||||||| | ||| ||||||| | |||
Sbjct 1178378 TTCGCCTCCGGCACCGGGTAGTAGTTGATGTCGATGATTTTGTTCAGGTTGCGCGTGACG 1178319
Query 1627984 ACCTGGACGATCTCGTGCAG 1628003
| || | ||| ||| | |||
Sbjct 1178318 ATCTTGGCGACCTCCTTCAG 1178299
>seq9249
Length=5918260
Score = 109 bits (120), Expect = 7e-18
Identities = 146/203 (72%), Gaps = 0/203 (0%)
Strand=Plus/Minus
Query 1254346 TGGCCAGTTCGCCGCGCATGATCAGGCGCACGGCGGTCTGGATCTCGCGCGTGCCGATCG 1254405
||||||| || || ||| | ||| || ||||||||||| |||||||| | ||| |
Sbjct 13260 TGGCCAGCTCACCCGGCAACAGCAGCCGGACGGCGGTCTGAATCTCGCGGGACGTGATGG 13201
Query 1254406 TGTTGCGCTTGTTCGAGTGCGCCAGACGGCCGGCCTCGGTGCCGATGCGGTCGATCATGT 1254465
| ||| ||||| |||||||||| ||| || || | | || || |||| ||||
Sbjct 13200 TCGAGCGTTTGTTGTAGTGCGCCAGCCGGGACGCTTCCGCTGCAATCCGCTCGAAGATGT 13141
Query 1254466 CGTTGACAAACGAGTTCATGACCGACATCGACTTGTTGGAGATGCCCACGTCGGGGTGCA 1254525
||||||| || |||||| | ||| | |||| |||||||| ||| || || |
Sbjct 13140 CGTTGACGAAGCTGTTCATAATGCTCATGGCCTTGGACGAGATGCCGGTGTCCGGATGGA 13081
Query 1254526 CCTGCTTGAGCACCTTGTAGATG 1254548
||||||| |||||||||||||||
Sbjct 13080 CCTGCTTCAGCACCTTGTAGATG 13058
>seq9254
Length=4138565
Score = 104 bits (114), Expect = 3e-16
Identities = 159/226 (70%), Gaps = 7/226 (3%)
Strand=Plus/Plus
Query 869174 TGCGAACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCG 869233
||| | || ||||| || |||| ||||| |||| | ||| ||||| || ||
Sbjct 2197243 TGCAAGCCCTCGTCACGCGAAATCAGCTCGTTCGAGAAGGTCAAGCCTGGCATCAGTCCT 2197302
Query 869234 CGCTTCTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCG 869293
|||||||| ||||| ||||| ||| || ||||| ||| || || ||||||||||||
Sbjct 2197303 CGCTTCTTAAGCCAGAAGATAGCGGCAAAGCTGCCGCTGAAGAAAATTCCCTCGACGGCG 2197362
Query 869294 GCAAAGCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGTTG--ATCCACTTCA 869351
||||| ||| | |||||| | ||| | ||| || | | | ||||| ||||
Sbjct 2197363 GCAAACGCGACAACACGCTCGCCGAAGTT-----GGCTTTCTTGCTCGAAATCCAGTTCA 2197417
Query 869352 TCGCCCAGTCGGCCTTTTTCCTCACCGACGGCACCGTGTCGATGGC 869397
|||||||| ||||| ||| |||| |||| | ||| ||||||||
Sbjct 2197418 GTGCCCAGTCAGCCTTCTTCTTCACACACGGTAGCGTTTCGATGGC 2197463
Score = 98.7 bits (108), Expect = 1e-14
Identities = 162/231 (70%), Gaps = 2/231 (1%)
Strand=Plus/Plus
Query 869635 GTGGATGTTCTCGATGGCGATCTGGAAGCCGTAAAAGGCCCTCACCTCTGCCACTTGGAC 869694
||||| ||| || || ||||||||||| || || ||| | | | || | ||| || ||
Sbjct 2197612 GTGGACGTTTTCCATCGCGATCTGGAAACCATAGAAGCAGCGCGCTTCGGTCACCTGCAC 2197671
Query 869695 CTCCTTCATGAACCGGCCGGCCAGGTTCTCGGCCACGATGCCGTCGCTGGCGGCGAAAAA 869754
|||| |||| || || |||| |||||| ||||| ||||| |||||||| ||
Sbjct 2197672 TTCCTGGCTGAATCGTTCGACCAGATTCTCGTTGACGATTCCGTCCGATGCGGCGAAGAA 2197731
Query 869755 AGCCAGGACGTGCTTGATAAAGTGGCGCTCG-TCGTCGCTGAGCGACACCCAGTGGACGG 869813
||| || |||||| ||| ||||| || ||| ||| | | |||| ||||||
Sbjct 2197732 AGCGAGCACGTGCGAGATGAAGTGACGTTCGCTCG-GTTTCAACGACTCCCAGTCCTTCA 2197790
Query 869814 TGTCGGCGCTGAGGTCCACCTCCTCGGCGGTCCAGATCGAGGCCTCGGCCT 869864
|||| |||||| |||||||| | ||||||| || ||||||||||
Sbjct 2197791 TGTCCTTCGAGAGGTCTACCTCCTCTACCGTCCAGAAAGATGCCTCGGCCT 2197841
>seq8875
Length=3622691
Score = 100 bits (110), Expect = 3e-15
Identities = 138/193 (72%), Gaps = 0/193 (0%)
Strand=Plus/Plus
Query 1592108 AAGCGCACCGACGACATCTCGCCGTGGGACAAGGAGTTTTGCGACGTCGAGCAGCCCACC 1592167
|||||||| || |||||| |||||||| || || | || || || ||
Sbjct 1649364 AAGCGCACGGATGACATCAGCTCGTGGGACGCCGACTTCCTGAAAGTTGATCAAGGTACA 1649423
Query 1592168 CTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGG 1592227
|| || ||| |||| || || ||||||||| | ||||| ||| ||||| ||| |
Sbjct 1649424 CTGTTCGAGCTGATTCTGGCTGCCAACTACTTGGACATTAAGGGCCTGCTTGATGTGACC 1649483
Query 1592228 TGCAAGTCTGTGGCCAACATGATCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTT 1592287
||||| | || ||||||||||||||||| || | || || |||||||||||||| ||
Sbjct 1649484 TGCAAAACCGTCGCCAACATGATCAAGGGTAAAACCCCGGAAGAGATCCGCAAGACGTTC 1649543
Query 1592288 AACATCAAGTACG 1592300
|| |||||| |||
Sbjct 1649544 AATATCAAGAACG 1649556
>seq8803
Length=21403
Score = 91.5 bits (100), Expect = 2e-12
Identities = 244/362 (67%), Gaps = 21/362 (6%)
Strand=Plus/Minus
Query 1852044 CGATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGCTCTCGGTGAGGCCCGGCACGA 1852103
||||||| || | ||||||||| ||||||||| | ||| || ||||| | |
Sbjct 11376 CGATCTTCGAATCTTCCTCGCTGGAAGACATCTTGCCAC---CGGCCAGTCCCGGTATCA 11320
Query 1852104 GCGGGTTGAGCAGGTGGAAGCGCTTCCGATAGCCGAGGACCGGCAGGTGGT-CGCGCGCA 1852162
|||||| | || || | |||||| || || || ||| |||| | | || |
Sbjct 11319 TCGGGTTCATGAGATGAATGCGCTTGGCGTAACCCAGCTGCGGTAGGTACTTCTCGGCGA 11260
Query 1852163 AAGGCAAATATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTGCTGC 1852222
||| ||| ||||| ||||| || || || ||||| ||||| || | ||||| ||
Sbjct 11259 AAGTGAAA-ATCTTCCGCTGATCAATGCCACCGAACTGTGCGTCCACCTTGAGGTACTCT 11201
Query 1852223 TCGTCGAGGGCCTGCATGAGCGGGTAGAGCACGTTGCTCAGGAGCGGGTTGCGGTCCATC 1852282
||||| || ||||||| ||||||||| | | | || || |||| | |||| |
Sbjct 11200 TCGTCCAGCGCCTGCAGTCCCGGGTAGAGAATGCCGGACATCAGTGGGT---GTTCCACC 11144
Query 1852283 T---TGACCACCTGAGCGGCGGCCT--TTTGCGCCGTGCCGGTGCG-CACGTGCGCCGCG 1852336
| ||||||||| || |||||| |||||| ||||| |||| |||| || ||
Sbjct 11143 TGCTTGACCACCTCGGCACCGGCCTTCTTTGCGTCGTGC---TGCGTCACGACCGACGAC 11087
Query 1852337 AGTCGGTAGAGGTCGAGCGCGTAGGCGCCGCCG-CA-CTGGTACTCGGTGCCGCGCACAA 1852394
|| ||||| | ||| || | ||| | || | || |||||| ||||| || ||||| |
Sbjct 11086 AGGCGGTACACGTCCAGGGTGTA--CTCCTTGGACAGCTGGTAGTCGGTTCCTCGCACGA 11029
Query 1852395 AC 1852396
||
Sbjct 11028 AC 11027
>seq8981
Length=1360667
Score = 89.7 bits (98), Expect = 6e-12
Identities = 203/294 (69%), Gaps = 11/294 (4%)
Strand=Plus/Minus
Query 733017 GTGGTGGTGACGCGCAACGGCGACGGCGCCAACGCCGTCAAGATC-GTGACGCGCGCCAT 733075
||| || |||||| |||| |||| || ||| | ||||||| ||| |||| | |
Sbjct 1108259 GTGATGCTGACGCTCAACAGCGAGGGATACAAGTTCTGCAAGATCCGTGT-GCGCTCGGT 1108201
Query 733076 GCGCCAGCCCG-AGTTGGGCGACAAACTGTCGTCGCGCCACGGCCAAAAGGGCACCGTGG 733134
||| | |||| || | |||||||| | | ||||| ||||| || ||||| ||| |
Sbjct 1108200 GCGT-ATCCCGCAGATTGGCGACAAGTTTGCATCGCGGCACGGGCAGAAGGGAACCTGCG 1108142
Query 733135 GCAGC--GTGCGCTCCACCGAGGACATGCCCTGGTCGCCGCGCGGCGGCGCCACGCCCGA 733192
||| || | | || ||||| ||||| | || | | ||| ||| ||||| ||
Sbjct 1108141 GCATTCAGTAC-CGGCAG-GAGGATATGCCGT--TCAC-GTGCGAGGGCATTACGCCGGA 1108087
Query 733193 CATCGTGATCAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGCTCGAGGC 733252
||| | |||||||||||||||||||||||||| ||||| || || | || |||||
Sbjct 1108086 CATTATCATCAACCCGCACGCCATCCCGTCGCGTATGACAATCGGGCATTTGATCGAGTG 1108027
Query 733253 CCTCCTGGGCAAGGTGGCCTGCCGCGAGGGCTACATCGGCGACGGCACGCCCTT 733306
| | | ||| ||| | | || | ||||| | |||||||| | ||| || ||
Sbjct 1108026 CATTCAGGGTAAGCTCGGCTCGAACAAGGGCGAAATCGGCGATGCCACACCGTT 1107973
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 6106352035560664
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |