Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq9207 367 1e-96 seq9325 120 3e-22 seq9240 120 3e-22 seq8899 109 5e-19 seq8738 96.9 3e-15 >seq9207 Length=1443628 Score = 367 bits (406), Expect = 1e-96 Identities = 1220/1865 (65%), Gaps = 57/1865 (3%) Strand=Plus/Minus Query 138151 GATTTATCTACAGTAAACTTTATGGCATCAGCGGCTGGTTTCGTTCTCAGATAATACATT 138210 ||||| || || ||||||| || || | |||| || || || | |||||| ||||| Sbjct 1179167 GATTTGTCCACCGTAAACTGGATCGCGTTCACGGCCGGCTTGGTGCGCAGATAGTACATG 1179108 Query 138211 CCCGTTTTTAA-CCCATTTTCCCAGGCGTACATGTGTATCGAAGTGAGTAACGCGTAAGT 138269 ||||| || | ||||| |||| || |||| | ||| ||||| || || |||| | Sbjct 1179107 CCCGTCTTCAGGCCCATCTTCC-AGCCGTAGAAGTGAATCGACGTCAGCTTGCCGTAGTT 1179049 Query 138270 CGGTTTCGCCAGAAATATGTTAAACGATTGACTCTGATCGATGAAAGCGCCTCGATCAAT 138329 ||||| |||| ||||| ||||| || |||||||||||| || || || || Sbjct 1179048 CGGTTCGGCCACGTGAATGTTGAACGACTGGGACTGATCGATGAACGCACCCCGGTCCGC 1178989 Query 138330 GGCCATGTTAATTAAATTTTT-ACTTTTCATCTCCCACACGGTCTTGTATAGATCACGAA 138388 |||||| || || | |||| || | ||||||||||| |||||||| || || || | Sbjct 1178988 GGCCATTTTGATGCACGTTTTCACCGAT-ATCTCCCACACCGTCTTGTACAGGTCGCGGA 1178930 Query 138389 TATGTCGCGGTATTGTTGCAATATTTTGAATGCTCCCGTTGGCCGCAATGATGCGATTTC 138448 | || |||| ||| | || || || |||||| ||||| ||| | || Sbjct 1178929 TGTGCTGCGGAATTTCCTCGATCCGCTGTATCGAACCGTTGTGCGCAAGGATTTGGTTCT 1178870 Query 138449 TCATGTCATCGTTGTACAGATTCAACTTGATCAAGTCGTTTATCAGATATCTGTTTATGA 138508 |||| || || | |||| | | | ||| || | | ||||| ||| | | Sbjct 1178869 TCATATCGTCATCCCACAGGCCGAGTTCGGTCAGATCCTGCAGCAGATGGTGGTTGACCA 1178810 Query 138509 CCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAACG 138568 |||| || || || | || || || ||| ||| | ||| ||| | ||||| |||| Sbjct 1178809 CCTGGAACTCGCCCGACAGCACGCGCCGATTGTAGACGTTCGAAGTGTACGGCTCGAACG 1178750 Query 138569 ATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGAG 138628 | |||||||| |||||||| || ||||||| ||||||||||| |||| || || | Sbjct 1178749 ACTCGTTGTTGCCCAGAATTTGGGCCGTGGAGGCGGTCGGCATCGGTGCCAGCAGGAGCG 1178690 Query 138629 AATTCCGTAAACCGTGAAGCTTG---ATTCGTTCCTTGAGCGACGACCAGTCCCACAAAT 138685 ||||||| | ||| | ||||| || |||||| ||| | ||||| ||||| | Sbjct 1178689 AATTCCGGATACC---ATGCTTGGCAATCTTTTCCTTCAGCTCGGCCCAGTTCCACAGGT 1178633 Query 138686 CGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCCAAACTTGCGGGACTGCCTT 138745 | | || | || | |||||| |||||||| | |||||| || | |||| ||| | Sbjct 1178632 CCGTTGGGGTCTTCTCCCACATGTCGTACTGCAGGATTCCCTTGCTCACCGGACAGCCCT 1178573 Query 138746 CGTACGAATCGTATACACCAAACTCTTGC-GCCAACTCGTTGCTCGCCTCGAGCGCACCA 138804 |||||| ||||| ||| | | || |||||||| ||| ||||| || || ||| Sbjct 1178572 CGTACGTTTCGTACGGACC-GTCGCGGGCGGCCAACTCACAGCTAGCCTCCAGAGCGCCA 1178514 Query 138805 TAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTCGGCGCTCTCGTACGGC 138864 ||||| || || || |||||||| || ||| | | || || | || |||||||| Sbjct 1178513 TAGTAGATGGTCTCAAAGATCTGCTGGTTCAGCTTTTGTGCTTCCTCACTTTCGTACGGA 1178454 Query 138865 ATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGCGATGG 138924 ||| | | ||||||| ||||||| || |||||||| | |||| ||| || ||| Sbjct 1178453 TGGCGCATGAGAATGAACGCATCGGCCATTCCCTGCACGCCGATACCGATAGGTCGGTGG 1178394 Query 138925 CGCAGATTTG-ACGCTTTTGCGGCTTCG--ATAGGATAATAGTTTACATCGATGATTTTG 138981 |||| || | |||||| || || || | || || ||||| | |||||||||||| Sbjct 1178393 CGCATGTTGGAACGCTT---CGCCTCCGGCACCGGGTAGTAGTTGATGTCGATGATTTTG 1178337 Query 138982 TTTAAATTTCGCACGACCACCTTAGTCGTATGCTTTAATCGTTCA--AAATCGTATGTGC 139039 || | || ||| ||| | ||| | || | || | | |||| || ||||| ||| Sbjct 1178336 TTCAGGTTGCGCGTGACGATCTT-GGCGACCTCCTTCAGC-TTCACGAAGTCGTACGTG- 1178280 Query 139040 CCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTATGTTGCACA 139099 || | || | || ||||| |||| | |||||| || | ||||||| Sbjct 1178279 ---CGAT-------CCGGCCTC-ACAAACATGTTCAGCGCAATCGACGCCAGATTGCACA 1178231 Query 139100 CCGCCACTTCGT-CGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTACTACACTTG 139158 |||| | ||||| | | || ||| ||||| || || | |||| || |||||| Sbjct 1178230 CCGCAATTTCGTCCTTCGACG-AGTACTCGACGATCTCCGTGCACAGGTTCGAGCACTTG 1178172 Query 139159 ATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAAGCATATAC 139218 ||||| || | || || || ||||| || ||||| || ||||| ||||| ||||| ||| Sbjct 1178171 ATCGTGCCCACGTTCTGCTGGTTGCTCTTCCGGTTGCACGCATCCTTGTAGAGCATGTAC 1178112 Query 139219 GGTGTGCCAGTTTCCACTTGTGTCTCTATAAT---GAATTTGAACAAGTCCCTAGCTTGT 139275 || ||| || || || || | ||| || || ||| ||| ||| || | Sbjct 1178111 GGCACGCCCGTCTCGACCTGCGACTCGATGATCGCGAA---CCACAGATCCTGCGCCTTC 1178055 Query 139276 ATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAATCGTTCA 139335 | || || | | | | | || |||||| ||| || || || ||| Sbjct 1178054 ACCTGCCGGATGAACCGACCTTCCTTCTCGTAGCCCGTGTACAGCCGCTCAAACTCTTCG 1177995 Query 139336 CCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATACGCCGTTC 139395 || | | || || || || | || | || |||||||| || ||| | ||||| Sbjct 1177994 CCCCACGACTCCGACAGCCCGGGGCAGTCGTGCGGACACATAAGGCTCCACATTTCGTTC 1177935 Query 139396 GCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATCGCGCGCC 139455 |||| || ||| |||||||||||||||| | ||||| ||| | | || || ||||| Sbjct 1177934 GCCTCCACCCGCTTCATGAACAGATCCGGCACCCACAGCGCGTAGAACATGTCACGCGCA 1177875 Query 139456 TTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAAACGTCAGCGTGC 139515 || ||| || |||| |||| | || || ||||| || || | ||| Sbjct 1177874 CGGACCTCCTCCTTGCCAGTGTTTTTCTTCAGATCGAGAAACTCAAACACATCGCCATGC 1177815 Query 139516 CATGGTTCCAGATAGATGGCCATTGCGCCTTTCCG---TTTGCCACCTTGATCGACGTGT 139572 || || || || |||||||| | || || || ||||| || || || || | Sbjct 1177814 CACGGCTCGAGGTAGATGGCGAACGCACCGGGACGCTTGTTGCCGCCCTGGTCCACATAC 1177755 Query 139573 CGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCTGTTCCGTTGGTG 139632 || | | || ||| | || |||| |||||| ||| ||| | | | ||||| ||| Sbjct 1177754 CGGGCCGTGTTGTTGTAGACACGCAGCATCGGAACCAACCCGTTGGAGATACCGTTCGTG 1177695 Query 139633 CTACGGATGGGACTGTTGC--GAGCTCGGACGTCATGTACATTGATGCCGATTCCGCCGC 139690 | || | | || || | || |||| | || || || | || || || ||| Sbjct 1177694 C-CCGCAATGTAC-GTACCCTTCGCCCGGATGCAGTGCACGTTCAGACCAATGCCTCCGG 1177637 Query 139691 CAAATTTGGATATTAAAACGCAATCGCGT-AATGTCTCGTATATACCTCTTATGCTGTCG 139749 | | ||||| || | |||| | || | | || ||||| || || || |||||| Sbjct 1177636 CGGACTTGGAGATCAGTGCGCACT-GCTTCAGCGTGTCGTAAATTCCCTCGATACTGTCG 1177578 Query 139750 TCCTGCATCGTGACCAGAAAGCATGACGAAAGTTGCGGTAGTTTCGTGCCGGCTGCAAAC 139809 ||| |||||| | |||||||| ||||| ||||| || | | |||| | || |||||| Sbjct 1177577 TCCGACATCGTTAGGAGAAAGCAGGACGACAGTTGGGGCCGCTGCGTGGCCGCCGCAAAC 1177518 Query 139810 AGAGTAGGACTCGCGTGCGTGAACATTTGTTTCGACATCAATTCGTACGTTTCGATGGCG 139869 | || || |||||||| || | | | ||| | ||| | |||||||||||| || Sbjct 1177517 ATGGTCGGCGAGGCGTGCGTAAAGTATCGCTCCGAAAGCAAATTGTACGTTTCGATTGC- 1177459 Query 139870 CTCA-CAATATCCCTTCCGTGGATACCGACAGAGACTCGCATCAGCATATGTTGGATCCG 139928 | || | || ||| |||||||| |||| | || ||||||||||| || || || Sbjct 1177458 CGCATCGATGTCCTCGCCGTGGATCCCGATGGCAACGCGCATCAGCATGTGCTGCGGTCG 1177399 Query 139929 TTCGGCCACCGCGCCCTCGAtttttttCAGATA--ACCGTTCTCTAGGGTCTTGTAGCCA 139986 |||| | | | ||||| ||| || ||| || ||||| || || || ||| ||||| Sbjct 1177398 TTCGACGATCTTGCCCTTGATCTTCAGCAGGTAGGACCGT--TCGAGCGTTTTGAAGCCA 1177341 Query 139987 AAGTA 139991 || || Sbjct 1177340 AAATA 1177336 >seq9325 Length=2359367 Score = 120 bits (132), Expect = 3e-22 Identities = 178/250 (71%), Gaps = 3/250 (1%) Strand=Plus/Plus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 |||||||| || | || ||||| || || || || || || ||||| || || | | Sbjct 260904 ATGCAGATTTTCGTGAAGACGCTGACTGGCAAGACCATCACTCTCGAGGTCGAGCCTTCG 260963 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || |||||||| ||||| || || || || || ||||| Sbjct 260964 GACACCATCGAGAACGTCAAGGCTAAGATCCAGGACAAGGAGGGTATTCCCCCAGATCAG 261023 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||||||||||| || || || ||||||||||| | | |||| || || ||| Sbjct 261024 CAGCGTTTGATCTTCGCTGGAAAGCAGCTGGAGGACGGACGTACTCTGTCCGACTACAAC 261083 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGGCGGAACTGAGCCA 24943 || || ||||||||||| || |||||||| | || | ||||||| | |||||| || Sbjct 261084 ATCCAGAAGGAATCGACCCTTCACTTGGTTCTTCGTCTTCGCGGAG--GAAACTGAATCA 261141 Query 24944 ACGAAAGACG 24953 | ||||||| Sbjct 261142 A-AAAAGACG 261150 >seq9240 Length=943838 Score = 120 bits (132), Expect = 3e-22 Identities = 156/216 (72%), Gaps = 0/216 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 |||||||||||| | ||||| || || ||||| || ||||| || || || || || | Sbjct 630584 GATGCAGATCTTCGTCAAAACCCTCACGGGTAAGACCATTACCCTTGAGGTCGAGCCCTC 630525 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 || || | || | || || |||||||| ||||| || || || || || || || Sbjct 630524 GGATACGATCGAGAATGTGAAGGCGAAGATCCAGGACAAGGAGGGCATCCCGCCGGACCA 630465 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| ||||||| ||||| || |||||||||||| | | |||| || || || Sbjct 630464 GCAGCGTCTGATCTTCGCCGGCAAGCAGCTGGAGGATGGACGCACGCTGTCCGACTACAA 630405 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCG 24918 |||||| ||||| ||||| || || ||||| |||| Sbjct 630404 CATTCAGAAGGAGTCGACCCTCCATCTGGTGCTGCG 630369 >seq8899 Length=3132144 Score = 109 bits (120), Expect = 5e-19 Identities = 161/228 (71%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | ||||| || || || || || || || || || || || | | Sbjct 384680 GATGCAGATTTTCGTGAAAACCCTCACTGGCAAGACCATCACCCTTGAGGTCGAGCCGTC 384621 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || || || || || || |||||||| || || ||||| Sbjct 384620 GGACACGATCGAGAATGTGAAGGCGAAAATTCAGGATAAGGAAGGAATTCCGCCAGATCA 384561 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 ||| ||| ||||||| ||||| || |||||||||||| | | | || || || || Sbjct 384560 ACAGCGTCTGATCTTCGCCGGTAAGCAGCTGGAGGATGGCCGTACGCTTTCGGACTACAA 384501 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 |||||| ||||| ||||| || ||| |||| ||||| | || || || Sbjct 384500 CATTCAGAAGGAGTCGACCCTTCACCTGGTTCTGCGACTTCGTGGTGG 384453 >seq8738 Length=1280009 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 24703 GATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCAC 24762 ||||||||| || | || || || || || || || || ||| | || || || | | Sbjct 1177662 GATGCAGATTTTCGTCAAGACCCTTACGGGAAAGACCATCACGTTGGAGGTGGAGCCTTC 1177603 Query 24763 CGACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCA 24822 ||||| | || | || || ||||| || ||||| || ||||| ||||| ||||| Sbjct 1177602 GGACACGATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGATCA 1177543 Query 24823 ACAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAA 24882 || ||| | ||||||||||| || |||||||| ||| | | | || ||||| || Sbjct 1177542 GCAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACTCTTTCGGATTACAA 1177483 Query 24883 CATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 ||| || ||||| || || || || |||| | || ||||||| || Sbjct 1177482 CATCCAGAAGGAGTCTACTCTCCATCTGGTCCTTCGTCTGCGCGGTGG 1177435 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||| || || | || || || || || || || || ||| | || || || | | Sbjct 1177433 ATGCAAATTTTCGTCAAGACCCTGACTGGAAAGACCATCACGTTGGAGGTTGAGCCTTCG 1177374 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 ||||| | || | || || ||||| || ||||| || ||||| ||||| ||||| Sbjct 1177373 GACACGATTGAGAATGTGAAGGCCAAGATTCAGGACAAGGAGGGAATCCCTCCAGATCAG 1177314 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 || ||| | ||||||||||| || |||||||| ||| | | | | || ||||| ||| Sbjct 1177313 CAGCGTCTCATCTTTGCCGGCAAGCAGCTGGAAGATGGCCGTACCCTTTCGGATTACAAC 1177254 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGTGTTGCGATTGCGCGGAGG 24930 || || ||||| || || || || |||| | || ||||||| || Sbjct 1177253 ATCCAGAAGGAGTCTACTCTCCATCTGGTCCTTCGTCTGCGCGGTGG 1177207 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449843657277760