Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14]
9,592 sequences; 220,777,669 total letters
Query= NC_022098.1
Length=2473870
Score E
Sequences producing significant alignments: (Bits) Value
seq9249 141 1e-27
seq9207 136 6e-26
seq8803 113 7e-19
seq8875 102 1e-15
seq8981 95.1 2e-13
seq9254 91.5 2e-12
>seq9249
Length=5918260
Score = 141 bits (156), Expect = 1e-27
Identities = 176/241 (73%), Gaps = 0/241 (0%)
Strand=Plus/Minus
Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529
||||||| || || |||||||||||||| || |||||||| ||||||| || || |||
Sbjct 13302 TGTACTTAGTCACCGCCTTGGTACCCTCGGACACGGCGTGTTTGGCCAGCTCACCCGGCA 13243
Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589
| ||| || ||||||||||| |||||||||| ||| || ||| ||||| |
Sbjct 13242 ACAGCAGCCGGACGGCGGTCTGAATCTCGCGGGACGTGATGGTCGAGCGTTTGTTGTAGT 13183
Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649
||||||| ||| || || | | || || |||| ||||||||||| || |||||
Sbjct 13182 GCGCCAGCCGGGACGCTTCCGCTGCAATCCGCTCGAAGATGTCGTTGACGAAGCTGTTCA 13123
Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709
| || ||| | ||| |||||||| ||| || || |||||||| ||||||||||
Sbjct 13122 TAATGCTCATGGCCTTGGACGAGATGCCGGTGTCCGGATGGACCTGCTTCAGCACCTTGT 13063
Query 1485710 A 1485710
|
Sbjct 13062 A 13062
>seq9207
Length=1443628
Score = 136 bits (150), Expect = 6e-26
Identities = 327/489 (67%), Gaps = 12/489 (2%)
Strand=Plus/Minus
Query 2069253 GTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCGGT 2069312
||| || ||||||||||| ||||| |||| ||| ||||||||||||||||||||| ||
Sbjct 1179162 GTCCACCGTAAACTGGATCGCGTTCACGGCCGGCTTGGTGCGCAGATAGTACATGCCCGT 1179103
Query 2069313 CTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCATTCGGGAC 2069372
||| ||||| ||| ||||| ||| |||||||| | || ||||| |
Sbjct 1179102 CTTCAGGCCCATCTTCCAGCCGTAGAAGTGAATCGACGTCAGCTTGCCGTAGTTCGGTTC 1179043
Query 2069373 GGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGCCAT 2069432
||| || | ||||| ||||||| ||| |||| | | | ||||| || |||||
Sbjct 1179042 GGCCACGTGAATGTTGAACGACTGGGACTGATCGATGAACGCACCCCGGTCCGCGGCCAT 1178983
Query 2069433 GTCGATGGTCACGCGGT--TGGACACCTCCCACACGGTCTTGAACAGGGCCTTGAGATGC 2069490
| |||| |||| | || | ||||||||| |||||| ||||| | || |||
Sbjct 1178982 TTTGATG--CACGTTTTCACCGATATCTCCCACACCGTCTTGTACAGGTCGCGGATGTGC 1178925
Query 2069491 GGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCC-CTGCGCTGCGATGAGGCGGTC 2069549
|||| | || ||| ||| | ||| | ||| || || || || | || |||
Sbjct 1178924 TGCGGAATTTCCTCG--ATC----CGCTGTATCGAACCGTTGTGC-GCAAGGATTTGGTT 1178872
Query 2069550 GCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGTTGAC 2069609
| ||| |||||||||| | | ||| || | ||| ||| |||||||
Sbjct 1178871 CTTCATATCGTCATCCCACAGGCCGAGTTCGGTCAGATCCTGCAGCAGATGGTGGTTGAC 1178812
Query 2069610 CACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCA 2069669
||| || |||||||| |||||||| || |||||| ||| ||| |||| |
Sbjct 1178811 CACCTGGAACTCGCCCGACAGCACGCGCCGATTGTAGACGTTCGAAGTGTACGGCTCGAA 1178752
Query 2069670 CGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAG 2069729
|| |||| |||||||||| || || | ||| | ||| || ||||| | |||| || ||
Sbjct 1178751 CGACTCGTTGTTGCCCAGAATTTGGGCCGTGGAGGCGGTCGGCATCGGTGCCAGCAGGAG 1178692
Query 2069730 CGAGTTGCG 2069738
||| || ||
Sbjct 1178691 CGAATTCCG 1178683
Score = 107 bits (118), Expect = 3e-17
Identities = 110/144 (76%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 2071566 CGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTG 2071625
|||||| ||| ||||| ||| ||||||||||| | || | | ||||||| ||||||
Sbjct 1178214 CGACGAGTACTCGACGATCTCCGTGCACAGGTTCGAGCACTTGATCGTGCCCACGTTCTG 1178155
Query 2071626 CTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGAT 2071685
||||||||| || ||||| || ||||||| |||||||| ||| | ||||||||||
Sbjct 1178154 CTGGTTGCTCTTCCGGTTGCACGCATCCTTGTAGAGCATGTACGGCACGCCCGTCTCGAC 1178095
Query 2071686 CTGCGCCGTGACGATGGCCGACCA 2071709
||||| | || ||| || ||||
Sbjct 1178094 CTGCGACTCGATGATCGCGAACCA 1178071
Score = 96.9 bits (106), Expect = 5e-14
Identities = 88/111 (79%), Gaps = 0/111 (0%)
Strand=Plus/Minus
Query 2070133 AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGC 2070192
||||| ||||||| ||||||||||||| || || || |||||||||| ||| || ||
Sbjct 1178438 AACGCATCGGCCATTCCCTGCACGCCGATACCGATAGGTCGGTGGCGCATGTTGGAACGC 1178379
Query 2070193 CGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTG 2070243
||||| ||||||||||||| |||||||||||| | ||| ||||||
Sbjct 1178378 TTCGCCTCCGGCACCGGGTAGTAGTTGATGTCGATGATTTTGTTCAGGTTG 1178328
>seq8803
Length=21403
Score = 113 bits (124), Expect = 7e-19
Identities = 246/362 (68%), Gaps = 15/362 (4%)
Strand=Plus/Minus
Query 2411383 AGATCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGC 2411442
||||| ||||| || | ||||||||| ||||||||| | || || |||||
Sbjct 11380 AGATCGATCTTCGAATCTTCCTCGCTGGAAGACATCTTGCCACC---GGCCAGTCCCGGT 11324
Query 2411443 ACCAGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGT-CGCG 2411501
| || |||||| | || || ||||||||| ||| |||||| ||| |||| | | ||
Sbjct 11323 ATCATCGGGTTCATGAGATGAATGCGCTTGGCGTAACCCAGCTGCGGTAGGTACTTCTCG 11264
Query 2411502 CGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTG 2411561
|||| ||| ||||| ||||| || || || ||||| ||||| || | |||||
Sbjct 11263 GCGAAAGTGAAA-ATCTTCCGCTGATCAATGCCACCGAACTGTGCGTCCACCTTGAGGTA 11205
Query 2411562 CTGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTGCGGTC 2411621
|| ||||| || ||||||| |||||||| | | | | | | |||| | ||
Sbjct 11204 CTCTTCGTCCAGCGCCTGCAGTCCCGGGTAGAGAATGCCGGACATCAGTGGGT---GTTC 11148
Query 2411622 CATCT---TGACCACCTGGGCGGCGGCCT--TTTGCGCCGTGCCGACGGTCACGCGCGCC 2411676
|| || ||||||||| ||| |||||| |||||| ||||| | |||||| || |
Sbjct 11147 CACCTGCTTGACCACCTCGGCACCGGCCTTCTTTGCGTCGTGCTG--CGTCACGACCGAC 11090
Query 2411677 GTCAGGCGCAAGAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACA 2411736
| |||||| | | ||| || ||||| | | ||||||| ||| | || |||||
Sbjct 11089 GACAGGCGGTACACGTCCAGGGTGTACTCCTTGGACAGCTGGTAGTCGGTTCCTCGCACG 11030
Query 2411737 AA 2411738
||
Sbjct 11029 AA 11028
>seq8875
Length=3622691
Score = 102 bits (112), Expect = 1e-15
Identities = 140/196 (71%), Gaps = 0/196 (0%)
Strand=Plus/Plus
Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625
|| |||||||| || ||||| |||||||| | ||| | || || |||
Sbjct 1649361 GAAAAGCGCACGGATGACATCAGCTCGTGGGACGCCGACTTCCTGAAAGTTGATCAAGGT 1649420
Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685
|| || || ||| |||| || || ||||||||| | ||||| ||| ||| || ||| ||
Sbjct 1649421 ACACTGTTCGAGCTGATTCTGGCTGCCAACTACTTGGACATTAAGGGCCTGCTTGATGTG 1649480
Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745
||||| ||||| |||||| | |||||||| || | || || || |||||||||||
Sbjct 1649481 ACCTGCAAAACCGTCGCCAACATGATCAAGGGTAAAACCCCGGAAGAGATCCGCAAGACG 1649540
Query 2035746 TTTAACATCAAGTACG 2035761
|| || |||||| |||
Sbjct 1649541 TTCAATATCAAGAACG 1649556
>seq8981
Length=1360667
Score = 95.1 bits (104), Expect = 2e-13
Identities = 158/225 (70%), Gaps = 4/225 (2%)
Strand=Plus/Minus
Query 653648 CCCG-AGGTGGGCGACAAACTGTCGTCGCGCCACGGGCAAAAGGGCACCGTGGGCAGCGT 653706
|||| || | |||||||| | | ||||| |||||||| ||||| ||| ||||
Sbjct 1108194 CCCGCAGATTGGCGACAAGTTTGCATCGCGGCACGGGCAGAAGGGAACCTGCGGCATTCA 1108135
Query 653707 GCGCTCGACCGAGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGACATCGTCAT 653766
| | | ||||| ||||||| || | | ||| |||| ||||| ||||| ||||
Sbjct 1108134 GTACCGGCAGGAGGATATGCCGT--TCAC-GTGCGAGGGCATTACGCCGGACATTATCAT 1108078
Query 653767 CAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGCCCTCCTGGG 653826
|||||||||||||||||||||||| ||||| || || | |||| ||| | | | |||
Sbjct 1108077 CAACCCGCACGCCATCCCGTCGCGTATGACAATCGGGCATTTGATCGAGTGCATTCAGGG 1108018
Query 653827 CAAGGTGGCCTGCCGCGAGGGCTACGTGGGCGACGGCACCCCGTT 653871
||| | | || | ||||| | | ||||| | ||| |||||
Sbjct 1108017 TAAGCTCGGCTCGAACAAGGGCGAAATCGGCGATGCCACACCGTT 1107973
>seq9254
Length=4138565
Score = 91.5 bits (100), Expect = 2e-12
Identities = 131/182 (72%), Gaps = 7/182 (4%)
Strand=Plus/Plus
Query 794379 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAA 794438
||| ||||| || || |||||||| ||||| ||||| || || ||||| ||| ||
Sbjct 2197287 GCCTGGCATCAGTCCTCGCTTCTTAAGCCAGAAGATAGCGGCAAAGCTGCCGCTGAAGAA 2197346
Query 794439 GATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTT 794498
|| ||||||||||||||||| |||| | ||||| || |||| ||| ||||
Sbjct 2197347 AATTCCCTCGACGGCGGCAAACGCGACAACACGCTC-GCCGAAGT----TGGCTTTCTTG 2197401
Query 794499 GTTG--ATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556
| | ||||| |||| ||||| || ||||| ||| |||| | || | ||| ||||||
Sbjct 2197402 CTCGAAATCCAGTTCAGTGCCCAGTCAGCCTTCTTCTTCACACACGGTAGCGTTTCGATG 2197461
Query 794557 GC 794558
||
Sbjct 2197462 GC 2197463
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 7915226055210888
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |