Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq9249 141 1e-27 seq9207 136 6e-26 seq8803 113 7e-19 seq8875 102 1e-15 seq8981 95.1 2e-13 seq9254 91.5 2e-12 >seq9249 Length=5918260 Score = 141 bits (156), Expect = 1e-27 Identities = 176/241 (73%), Gaps = 0/241 (0%) Strand=Plus/Minus Query 1485470 TGTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCA 1485529 ||||||| || || |||||||||||||| || |||||||| ||||||| || || ||| Sbjct 13302 TGTACTTAGTCACCGCCTTGGTACCCTCGGACACGGCGTGTTTGGCCAGCTCACCCGGCA 13243 Query 1485530 TGATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGC 1485589 | ||| || ||||||||||| |||||||||| ||| || ||| ||||| | Sbjct 13242 ACAGCAGCCGGACGGCGGTCTGAATCTCGCGGGACGTGATGGTCGAGCGTTTGTTGTAGT 13183 Query 1485590 GCGCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTCGTTGACAAACGAGTTCA 1485649 ||||||| ||| || || | | || || |||| ||||||||||| || ||||| Sbjct 13182 GCGCCAGCCGGGACGCTTCCGCTGCAATCCGCTCGAAGATGTCGTTGACGAAGCTGTTCA 13123 Query 1485650 TGATCGACATCGATTTGTTGGAGATGCCCACGTCGGGGTGCACCTGCTTGAGCACCTTGT 1485709 | || ||| | ||| |||||||| ||| || || |||||||| |||||||||| Sbjct 13122 TAATGCTCATGGCCTTGGACGAGATGCCGGTGTCCGGATGGACCTGCTTCAGCACCTTGT 13063 Query 1485710 A 1485710 | Sbjct 13062 A 13062 >seq9207 Length=1443628 Score = 136 bits (150), Expect = 6e-26 Identities = 327/489 (67%), Gaps = 12/489 (2%) Strand=Plus/Minus Query 2069253 GTCGACGGTAAACTGGATGGCGTTGGCGGCAGGCCGGGTGCGCAGATAGTACATGCCGGT 2069312 ||| || ||||||||||| ||||| |||| ||| ||||||||||||||||||||| || Sbjct 1179162 GTCCACCGTAAACTGGATCGCGTTCACGGCCGGCTTGGTGCGCAGATAGTACATGCCCGT 1179103 Query 2069313 CTTGAGGCCGCGACGCCACGCGTAGGCGTGCATCGACGTGATGGACTCGGCATTCGGGAC 2069372 ||| ||||| ||| ||||| ||| |||||||| | || ||||| | Sbjct 1179102 CTTCAGGCCCATCTTCCAGCCGTAGAAGTGAATCGACGTCAGCTTGCCGTAGTTCGGTTC 1179043 Query 2069373 GGCACAGTAGAGGTTGAGCGACTGGCTCTGGTCGACATAGGGCGCGCGGTCGGCCGCCAT 2069432 ||| || | ||||| ||||||| ||| |||| | | | ||||| || ||||| Sbjct 1179042 GGCCACGTGAATGTTGAACGACTGGGACTGATCGATGAACGCACCCCGGTCCGCGGCCAT 1178983 Query 2069433 GTCGATGGTCACGCGGT--TGGACACCTCCCACACGGTCTTGAACAGGGCCTTGAGATGC 2069490 | |||| |||| | || | ||||||||| |||||| ||||| | || ||| Sbjct 1178982 TTTGATG--CACGTTTTCACCGATATCTCCCACACCGTCTTGTACAGGTCGCGGATGTGC 1178925 Query 2069491 GGCGGCACCTCGTCGTCATCAAAGCCCTGCACCGAGCC-CTGCGCTGCGATGAGGCGGTC 2069549 |||| | || ||| ||| | ||| | ||| || || || || | || ||| Sbjct 1178924 TGCGGAATTTCCTCG--ATC----CGCTGTATCGAACCGTTGTGC-GCAAGGATTTGGTT 1178872 Query 2069550 GCGAAAGTCGGGCGTCCACAGGCCGCGCGCCATCATGCGCTCGACCAGGTGGCGGTTGAC 2069609 | ||| |||||||||| | | ||| || | ||| ||| ||||||| Sbjct 1178871 CTTCATATCGTCATCCCACAGGCCGAGTTCGGTCAGATCCTGCAGCAGATGGTGGTTGAC 1178812 Query 2069610 CACGGTAAAGTCGCCCGAGAGCACGCGGCGCGTGTAGATGTTGCTCGTGATGACCTCGCA 2069669 ||| || |||||||| |||||||| || |||||| ||| ||| |||| | Sbjct 1178811 CACCTGGAACTCGCCCGACAGCACGCGCCGATTGTAGACGTTCGAAGTGTACGGCTCGAA 1178752 Query 2069670 CGCCTCGGTGTTGCCCAGGATCTGCGACGTCGTGGCCGTGGGCATGAGCGCCACGAGCAG 2069729 || |||| |||||||||| || || | ||| | ||| || ||||| | |||| || || Sbjct 1178751 CGACTCGTTGTTGCCCAGAATTTGGGCCGTGGAGGCGGTCGGCATCGGTGCCAGCAGGAG 1178692 Query 2069730 CGAGTTGCG 2069738 ||| || || Sbjct 1178691 CGAATTCCG 1178683 Score = 107 bits (118), Expect = 3e-17 Identities = 110/144 (76%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 2071566 CGACGAAAACTGGACGACCTCGGTGCACAGGTTGGCCGACATCGTGGTGCCCAGGTTCTG 2071625 |||||| ||| ||||| ||| ||||||||||| | || | | ||||||| |||||| Sbjct 1178214 CGACGAGTACTCGACGATCTCCGTGCACAGGTTCGAGCACTTGATCGTGCCCACGTTCTG 1178155 Query 2071626 CTGGTTGCTGGTCAGGTTGACGGCGTCCTTGTGCAGCATGTAGGGCGCACCCGTCTCGAT 2071685 ||||||||| || ||||| || ||||||| |||||||| ||| | |||||||||| Sbjct 1178154 CTGGTTGCTCTTCCGGTTGCACGCATCCTTGTAGAGCATGTACGGCACGCCCGTCTCGAC 1178095 Query 2071686 CTGCGCCGTGACGATGGCCGACCA 2071709 ||||| | || ||| || |||| Sbjct 1178094 CTGCGACTCGATGATCGCGAACCA 1178071 Score = 96.9 bits (106), Expect = 5e-14 Identities = 88/111 (79%), Gaps = 0/111 (0%) Strand=Plus/Minus Query 2070133 AACGCGTCGGCCAGGCCCTGCACGCCGACGCCCATCGGCCGGTGGCGCAGGTTCGAGTGC 2070192 ||||| ||||||| ||||||||||||| || || || |||||||||| ||| || || Sbjct 1178438 AACGCATCGGCCATTCCCTGCACGCCGATACCGATAGGTCGGTGGCGCATGTTGGAACGC 1178379 Query 2070193 CGGGCCTCGGGCACCGGGTAGTGGTTGATGTCGATCACGCGGTTGAGGTTG 2070243 ||||| ||||||||||||| |||||||||||| | ||| |||||| Sbjct 1178378 TTCGCCTCCGGCACCGGGTAGTAGTTGATGTCGATGATTTTGTTCAGGTTG 1178328 >seq8803 Length=21403 Score = 113 bits (124), Expect = 7e-19 Identities = 246/362 (68%), Gaps = 15/362 (4%) Strand=Plus/Minus Query 2411383 AGATCAATCTTGGAGGCGGCCTCGCTGGCGCTCATCTTGCCGTCCTTGGTGAGGCCCGGC 2411442 ||||| ||||| || | ||||||||| ||||||||| | || || ||||| Sbjct 11380 AGATCGATCTTCGAATCTTCCTCGCTGGAAGACATCTTGCCACC---GGCCAGTCCCGGT 11324 Query 2411443 ACCAGCGGGTTGAGCAGGTGGATGCGCTTGCGGTAGCCCAGCGCCGGCAGGTGGT-CGCG 2411501 | || |||||| | || || ||||||||| ||| |||||| ||| |||| | | || Sbjct 11323 ATCATCGGGTTCATGAGATGAATGCGCTTGGCGTAACCCAGCTGCGGTAGGTACTTCTCG 11264 Query 2411502 CGCAAAGGCAAAGATCTTGCGCTGGTCGCGCCCGCCAAACTGGGCGTCGACGTCGAGGTG 2411561 |||| ||| ||||| ||||| || || || ||||| ||||| || | ||||| Sbjct 11263 GCGAAAGTGAAA-ATCTTCCGCTGATCAATGCCACCGAACTGTGCGTCCACCTTGAGGTA 11205 Query 2411562 CTGCTCGTCGAGGGCCTGCATGAGCGGGTAGACGAGGTTGCTGAGCGGCGGGTTGCGGTC 2411621 || ||||| || ||||||| |||||||| | | | | | | |||| | || Sbjct 11204 CTCTTCGTCCAGCGCCTGCAGTCCCGGGTAGAGAATGCCGGACATCAGTGGGT---GTTC 11148 Query 2411622 CATCT---TGACCACCTGGGCGGCGGCCT--TTTGCGCCGTGCCGACGGTCACGCGCGCC 2411676 || || ||||||||| ||| |||||| |||||| ||||| | |||||| || | Sbjct 11147 CACCTGCTTGACCACCTCGGCACCGGCCTTCTTTGCGTCGTGCTG--CGTCACGACCGAC 11090 Query 2411677 GTCAGGCGCAAGAGGTCGAGCGTGTAGGCGGCGCCATGCTGGTAATCGCTGCCGCGCACA 2411736 | |||||| | | ||| || ||||| | | ||||||| ||| | || ||||| Sbjct 11089 GACAGGCGGTACACGTCCAGGGTGTACTCCTTGGACAGCTGGTAGTCGGTTCCTCGCACG 11030 Query 2411737 AA 2411738 || Sbjct 11029 AA 11028 >seq8875 Length=3622691 Score = 102 bits (112), Expect = 1e-15 Identities = 140/196 (71%), Gaps = 0/196 (0%) Strand=Plus/Plus Query 2035566 GACAAGCGCACCGACGACATTTCGCCGTGGGACAAGGCCTTTTGCGAGGTCGACCAACCC 2035625 || |||||||| || ||||| |||||||| | ||| | || || ||| Sbjct 1649361 GAAAAGCGCACGGATGACATCAGCTCGTGGGACGCCGACTTCCTGAAAGTTGATCAAGGT 1649420 Query 2035626 ACCCTCTTTGAGTTGATCCTCGCCGCCAACTACCTCGACATCAAGCCCCTCCTCGATTTG 2035685 || || || ||| |||| || || ||||||||| | ||||| ||| ||| || ||| || Sbjct 1649421 ACACTGTTCGAGCTGATTCTGGCTGCCAACTACTTGGACATTAAGGGCCTGCTTGATGTG 1649480 Query 2035686 GGGTGCAAGACCGTGGCCAACCTTATCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACC 2035745 ||||| ||||| |||||| | |||||||| || | || || || ||||||||||| Sbjct 1649481 ACCTGCAAAACCGTCGCCAACATGATCAAGGGTAAAACCCCGGAAGAGATCCGCAAGACG 1649540 Query 2035746 TTTAACATCAAGTACG 2035761 || || |||||| ||| Sbjct 1649541 TTCAATATCAAGAACG 1649556 >seq8981 Length=1360667 Score = 95.1 bits (104), Expect = 2e-13 Identities = 158/225 (70%), Gaps = 4/225 (2%) Strand=Plus/Minus Query 653648 CCCG-AGGTGGGCGACAAACTGTCGTCGCGCCACGGGCAAAAGGGCACCGTGGGCAGCGT 653706 |||| || | |||||||| | | ||||| |||||||| ||||| ||| |||| Sbjct 1108194 CCCGCAGATTGGCGACAAGTTTGCATCGCGGCACGGGCAGAAGGGAACCTGCGGCATTCA 1108135 Query 653707 GCGCTCGACCGAGGAAATGCCGTGGTCGCCGCGCGGGGGCGCCACGCCCGACATCGTCAT 653766 | | | ||||| ||||||| || | | ||| |||| ||||| ||||| |||| Sbjct 1108134 GTACCGGCAGGAGGATATGCCGT--TCAC-GTGCGAGGGCATTACGCCGGACATTATCAT 1108078 Query 653767 CAACCCGCACGCCATCCCGTCGCGCATGACCATGGGCAAGATGATGGAGGCCCTCCTGGG 653826 |||||||||||||||||||||||| ||||| || || | |||| ||| | | | ||| Sbjct 1108077 CAACCCGCACGCCATCCCGTCGCGTATGACAATCGGGCATTTGATCGAGTGCATTCAGGG 1108018 Query 653827 CAAGGTGGCCTGCCGCGAGGGCTACGTGGGCGACGGCACCCCGTT 653871 ||| | | || | ||||| | | ||||| | ||| ||||| Sbjct 1108017 TAAGCTCGGCTCGAACAAGGGCGAAATCGGCGATGCCACACCGTT 1107973 >seq9254 Length=4138565 Score = 91.5 bits (100), Expect = 2e-12 Identities = 131/182 (72%), Gaps = 7/182 (4%) Strand=Plus/Plus Query 794379 GCCGGGCATGAGGCCGCGCTTCTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAA 794438 ||| ||||| || || |||||||| ||||| ||||| || || ||||| ||| || Sbjct 2197287 GCCTGGCATCAGTCCTCGCTTCTTAAGCCAGAAGATAGCGGCAAAGCTGCCGCTGAAGAA 2197346 Query 794439 GATGCCCTCGACGGCGGCAAAGCCGACGAGCCGCTCGGCAAAAGTGTCCAGGCCCTCTTT 794498 || ||||||||||||||||| |||| | ||||| || |||| ||| |||| Sbjct 2197347 AATTCCCTCGACGGCGGCAAACGCGACAACACGCTC-GCCGAAGT----TGGCTTTCTTG 2197401 Query 794499 GTTG--ATCCACTTCATCGCCCACTCTGCCTTTTTCCTCACCGAGGGCACCGTGTCGATG 794556 | | ||||| |||| ||||| || ||||| ||| |||| | || | ||| |||||| Sbjct 2197402 CTCGAAATCCAGTTCAGTGCCCAGTCAGCCTTCTTCTTCACACACGGTAGCGTTTCGATG 2197461 Query 794557 GC 794558 || Sbjct 2197462 GC 2197463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7915226055210888