Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14]
9,592 sequences; 220,777,669 total letters
Query= NC_024446.1
Length=306862
Score E
Sequences producing significant alignments: (Bits) Value
seq8738 149 1e-30
seq8899 118 2e-21
seq9239 111 3e-19
>seq8738
Length=1280009
Score = 149 bits (164), Expect = 1e-30
Identities = 169/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643
|| || | || ||| || || | || |||||||| || ||||| || || ||||| ||
Sbjct 1177435 CCACCGCGCAGACGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCCGAA 1177494
Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703
||| | | || ||||| || || || || |||||||| || | || |||||||||||
Sbjct 1177495 AGAGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGG 1177554
Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763
||||| ||||| || |||||||| || || ||||| |||||||| || ||| || ||
Sbjct 1177555 ATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATCGTGTCCGAAGGCTCCACC 1177614
Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
||||| || || ||||| || || | ||||| || || ||||||||
Sbjct 1177615 TCCAACGTGATGGTCTTTCCCGTAAGGGTCTTGACGAAAATCTGCAT 1177661
Score = 147 bits (162), Expect = 4e-30
Identities = 170/229 (74%), Gaps = 0/229 (0%)
Strand=Plus/Plus
Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642
||| || | || ||| || || | || |||||||| || ||||| || || ||||| ||
Sbjct 1177206 ACCACCGCGCAGACGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCCGA 1177265
Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702
|| | | || ||||| || || || || |||||||| || | || |||||||||||
Sbjct 1177266 AAGGGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGG 1177325
Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762
||||| ||||| || |||||||| || || ||||| |||||||| || ||| || ||
Sbjct 1177326 GATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATCGTGTCCGAAGGCTCAAC 1177385
Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811
||||| || || ||||| || |||| ||||| || || || ||||||
Sbjct 1177386 CTCCAACGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAAATTTGCATT 1177434
>seq8899
Length=3132144
Score = 118 bits (130), Expect = 2e-21
Identities = 155/215 (72%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655
|||||||| | ||| || || || || ||||| || || || || || || | | ||
Sbjct 384465 CGCAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGCGTACGGCCA 384524
Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715
|| || || || || || || ||||| || | ||||||||||| || ||||||||||||
Sbjct 384525 TCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGTTGATCTGGCGGAATTCCTTCCTTA 384584
Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775
|| ||||| || || || ||||| || ||||| || || || || || | || ||
Sbjct 384585 TCCTGAATTTTCGCCTTCACATTCTCGATCGTGTCCGACGGCTCGACCTCAAGGGTGATG 384644
Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810
|||||||| || | || || || || ||||||||
Sbjct 384645 GTCTTGCCAGTGAGGGTTTTCACGAAAATCTGCAT 384679
>seq9239
Length=1433044
Score = 111 bits (122), Expect = 3e-19
Identities = 295/446 (66%), Gaps = 6/446 (1%)
Strand=Plus/Minus
Query 198183 GAACTGTCGGATAATTTTTGTTACTATAATAAACATTACGATAGCGTACAGTCTACTCAC 198242
|||||||| || || ||||| | ||| |||||| | ||||| | | | ||| | ||
Sbjct 683687 GAACTGTCCGACAACTTTTGCTTCTACAATAAAAACTACGACAACCTGCAGGGGGCGTAC 683628
Query 198243 GCATGGGCTAGAAGAACATTAGAAGATCACATTAATGATCCTAGAAAGTATAT--CTATT 198300
| ||||| | | ||| | || |||||| || || | || || || |||||
Sbjct 683627 GATTGGGCGCGCAAAACGCTGGACGATCACCGGAAGGA--CAAGCGTGTGTACTGCTATT 683570
Query 198301 CTATTAAACAACTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCATCGCAAATAC 198360
| | | || |||| ||| |||| || ||| ||| ||||| || | || | |
Sbjct 683569 CGCGCGACGAGCTGGAAACGGCCAAAACGCACGACGATCTGTGGAACGCCGCCCAGCTGC 683510
Query 198361 AGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATAC 198420
||||| | | || || || |||||| | || | | ||||||||||| || |||||||
Sbjct 683509 AGATGGTGAAGGAGGGCAAGATGCATGGATTCCTGCGGATGTACTGGGCGAAGAAGATAC 683450
Query 198421 TTGAATGGACAAGAACACCGGAAGACGC-TTTGAGTTATAGTATCTATCTAAACAATAAG 198479
| || |||| | ||| || || || || | ||| | ||||| || ||| ||
Sbjct 683449 TCGAGTGGAGCAAAACGCCCGAGGAAGCGCTCGAGGCGGCG-ATCTACCTGAACGATCGT 683391
Query 198480 TACGAACTAGACGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGA 198539
||| ||||| || || || ||||| ||||| ||||| |||||||| || |||
Sbjct 683390 TACAGCCTAGATGGGCGCGACCCGAACGGGTACGTCGGTTGCATGTGGTCGATCGCTGGA 683331
Query 198540 TTACATGATCGAGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTAT 198599
| || |||| | ||||| ||| | || || || || |||||||| ||||| ||
Sbjct 683330 ATTCACGATCAGGGATGGAAGGAACGGGACATCTTCGGTAAAATAAGATACATGAACTAC 683271
Query 198600 GAGGGTTCTAAGAAAAAATTTGATGT 198625
|| |||| ||| | || || |||||
Sbjct 683270 GAAGGTTGTAAAAGGAAGTTCGATGT 683245
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 981706535891688
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |