Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Anopheles_20sinensis_20[genbank_20GCA_5F000441895.2_202014-07-14] 9,592 sequences; 220,777,669 total letters Query= NC_024446.1 Length=306862 Score E Sequences producing significant alignments: (Bits) Value seq8738 149 1e-30 seq8899 118 2e-21 seq9239 111 3e-19 >seq8738 Length=1280009 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 82584 CCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGAT 82643 || || | || ||| || || | || |||||||| || ||||| || || ||||| || Sbjct 1177435 CCACCGCGCAGACGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCCGAA 1177494 Query 82644 AGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGT 82703 ||| | | || ||||| || || || || |||||||| || | || ||||||||||| Sbjct 1177495 AGAGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGGG 1177554 Query 82704 ATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACT 82763 ||||| ||||| || |||||||| || || ||||| |||||||| || ||| || || Sbjct 1177555 ATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATCGTGTCCGAAGGCTCCACC 1177614 Query 82764 TCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 ||||| || || ||||| || || | ||||| || || |||||||| Sbjct 1177615 TCCAACGTGATGGTCTTTCCCGTAAGGGTCTTGACGAAAATCTGCAT 1177661 Score = 147 bits (162), Expect = 4e-30 Identities = 170/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 82583 ACCTCCTCTCAAACGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGA 82642 ||| || | || ||| || || | || |||||||| || ||||| || || ||||| || Sbjct 1177206 ACCACCGCGCAGACGAAGGACCAGATGGAGAGTAGACTCCTTCTGGATGTTGTAATCCGA 1177265 Query 82643 TAGAATTCTACCGTCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGG 82702 || | | || ||||| || || || || |||||||| || | || ||||||||||| Sbjct 1177266 AAGGGTACGGCCATCTTCCAGCTGCTTGCCGGCAAAGATGAGACGCTGCTGATCTGGAGG 1177325 Query 82703 TATTCCTTCCTTATCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTAC 82762 ||||| ||||| || |||||||| || || ||||| |||||||| || ||| || || Sbjct 1177326 GATTCCCTCCTTGTCCTGAATCTTGGCCTTCACATTCTCAATCGTGTCCGAAGGCTCAAC 1177385 Query 82763 TTCCAAAGTTATCGTCTTGCCTGTCAACGTCTTTACAAATATCTGCATT 82811 ||||| || || ||||| || |||| ||||| || || || |||||| Sbjct 1177386 CTCCAACGTGATGGTCTTTCCAGTCAGGGTCTTGACGAAAATTTGCATT 1177434 >seq8899 Length=3132144 Score = 118 bits (130), Expect = 2e-21 Identities = 155/215 (72%), Gaps = 0/215 (0%) Strand=Plus/Plus Query 82596 CGCAGAACTAAGTGCAGAGTAGATTCTTTCTGTATATTATAATCAGATAGAATTCTACCG 82655 |||||||| | ||| || || || || ||||| || || || || || || | | || Sbjct 384465 CGCAGAACCAGGTGAAGGGTCGACTCCTTCTGAATGTTGTAGTCCGAAAGCGTACGGCCA 384524 Query 82656 TCTTCTAGTTGTTTTCCAGCAAAGATTAGTCTTTGTTGATCTGGAGGTATTCCTTCCTTA 82715 || || || || || || || ||||| || | ||||||||||| || |||||||||||| Sbjct 384525 TCCTCCAGCTGCTTACCGGCGAAGATCAGACGCTGTTGATCTGGCGGAATTCCTTCCTTA 384584 Query 82716 TCTTGAATCTTTGCTTTTACATTTTCAATCGTATCATTAGGTTCTACTTCCAAAGTTATC 82775 || ||||| || || || ||||| || ||||| || || || || || | || || Sbjct 384585 TCCTGAATTTTCGCCTTCACATTCTCGATCGTGTCCGACGGCTCGACCTCAAGGGTGATG 384644 Query 82776 GTCTTGCCTGTCAACGTCTTTACAAATATCTGCAT 82810 |||||||| || | || || || || |||||||| Sbjct 384645 GTCTTGCCAGTGAGGGTTTTCACGAAAATCTGCAT 384679 >seq9239 Length=1433044 Score = 111 bits (122), Expect = 3e-19 Identities = 295/446 (66%), Gaps = 6/446 (1%) Strand=Plus/Minus Query 198183 GAACTGTCGGATAATTTTTGTTACTATAATAAACATTACGATAGCGTACAGTCTACTCAC 198242 |||||||| || || ||||| | ||| |||||| | ||||| | | | ||| | || Sbjct 683687 GAACTGTCCGACAACTTTTGCTTCTACAATAAAAACTACGACAACCTGCAGGGGGCGTAC 683628 Query 198243 GCATGGGCTAGAAGAACATTAGAAGATCACATTAATGATCCTAGAAAGTATAT--CTATT 198300 | ||||| | | ||| | || |||||| || || | || || || ||||| Sbjct 683627 GATTGGGCGCGCAAAACGCTGGACGATCACCGGAAGGA--CAAGCGTGTGTACTGCTATT 683570 Query 198301 CTATTAAACAACTCGAAAAGGCGGAAACACATGACCCTCTATGGAATGCATCGCAAATAC 198360 | | | || |||| ||| |||| || ||| ||| ||||| || | || | | Sbjct 683569 CGCGCGACGAGCTGGAAACGGCCAAAACGCACGACGATCTGTGGAACGCCGCCCAGCTGC 683510 Query 198361 AGATGATAAGAGAAGGAAAAATGCATAGTTTTTTAAGAATGTACTGGGCTAAAAAGATAC 198420 ||||| | | || || || |||||| | || | | ||||||||||| || ||||||| Sbjct 683509 AGATGGTGAAGGAGGGCAAGATGCATGGATTCCTGCGGATGTACTGGGCGAAGAAGATAC 683450 Query 198421 TTGAATGGACAAGAACACCGGAAGACGC-TTTGAGTTATAGTATCTATCTAAACAATAAG 198479 | || |||| | ||| || || || || | ||| | ||||| || ||| || Sbjct 683449 TCGAGTGGAGCAAAACGCCCGAGGAAGCGCTCGAGGCGGCG-ATCTACCTGAACGATCGT 683391 Query 198480 TACGAACTAGACGGCACGGATCCTAACGGATACGTAGGTTGTATGTGGTCTATTTGCGGA 198539 ||| ||||| || || || ||||| ||||| ||||| |||||||| || ||| Sbjct 683390 TACAGCCTAGATGGGCGCGACCCGAACGGGTACGTCGGTTGCATGTGGTCGATCGCTGGA 683331 Query 198540 TTACATGATCGAGCGTGGAAAGAAAGACCTATATTTGGGAAGATAAGATATATGAATTAT 198599 | || |||| | ||||| ||| | || || || || |||||||| ||||| || Sbjct 683330 ATTCACGATCAGGGATGGAAGGAACGGGACATCTTCGGTAAAATAAGATACATGAACTAC 683271 Query 198600 GAGGGTTCTAAGAAAAAATTTGATGT 198625 || |||| ||| | || || ||||| Sbjct 683270 GAAGGTTGTAAAAGGAAGTTCGATGT 683245 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 981706535891688